Copper in PDB 8aca: Sdbc DR_0644 Subunit, Only-Cu Superoxide Dismutase

The binding sites of Copper atom in the Sdbc DR_0644 Subunit, Only-Cu Superoxide Dismutase (pdb code 8aca). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Sdbc DR_0644 Subunit, Only-Cu Superoxide Dismutase, PDB code: 8aca:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in the Sdbc DR_0644 Subunit, Only-Cu Superoxide Dismutase


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Sdbc DR_0644 Subunit, Only-Cu Superoxide Dismutase within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu301 b:30.0 occ:1.00 NE2 A:HIS182 1.4 55.9 1.0 CD2 A:HIS182 1.7 49.9 1.0 CE1 A:HIS182 2.3 72.2 1.0 CD2 A:HIS74 2.4 109.0 1.0 NE2 A:HIS76 2.6 231.4 1.0 CG A:HIS182 2.7 83.9 1.0 ND1 A:HIS182 2.9 116.8 1.0 NE2 A:HIS74 3.1 162.4 1.0 CE1 A:HIS76 3.2 258.8 1.0 CG A:HIS74 3.6 279.1 1.0 O A:ASN180 3.6 130.3 1.0 CD2 A:HIS76 3.7 127.2 1.0 CB A:HIS182 3.9 93.2 1.0 CD1 A:LEU191 4.0 141.3 1.0 CB A:ASN180 4.2 96.7 1.0 CE1 A:HIS74 4.3 188.8 1.0 CB A:HIS74 4.4 113.6 1.0 C A:ASN180 4.4 153.9 1.0 ND1 A:HIS76 4.4 175.4 1.0 CD2 A:LEU191 4.5 103.8 1.0 N A:HIS74 4.5 164.9 1.0 ND1 A:HIS74 4.6 250.0 1.0 N A:HIS182 4.7 234.0 1.0 CG A:HIS76 4.7 231.3 1.0 CG A:ASN180 4.7 151.2 1.0 ND2 A:ASN180 4.8 81.9 1.0 CA A:ASN180 4.9 78.7 1.0 CG A:LEU191 4.9 157.1 1.0 CA A:HIS182 4.9 229.5 1.0 O A:VAL72 4.9 130.1 1.0

Copper binding site 2 out of 3 in the Sdbc DR_0644 Subunit, Only-Cu Superoxide Dismutase


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Sdbc DR_0644 Subunit, Only-Cu Superoxide Dismutase within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu301 b:30.0 occ:1.00 NE2 B:HIS182 1.6 55.9 1.0 NE2 B:HIS76 2.0 231.4 1.0 CD2 B:HIS182 2.1 49.9 1.0 NE2 B:HIS74 2.4 162.4 1.0 CE1 B:HIS182 2.6 72.2 1.0 CD2 B:HIS74 2.7 109.0 1.0 CE1 B:HIS74 3.0 188.8 1.0 CE1 B:HIS76 3.0 258.8 1.0 CD2 B:HIS76 3.1 127.2 1.0 CG B:HIS182 3.2 83.9 1.0 CG B:HIS74 3.3 279.1 1.0 ND1 B:HIS182 3.4 116.8 1.0 O B:ASN180 3.5 130.3 1.0 ND1 B:HIS74 3.5 250.0 1.0 N B:HIS74 4.0 164.9 1.0 CB B:ASN180 4.0 96.7 1.0 ND1 B:HIS76 4.1 175.4 1.0 C B:ASN180 4.1 153.9 1.0 CG B:HIS76 4.2 231.3 1.0 CG B:ASN180 4.5 151.2 1.0 CB B:HIS74 4.5 113.6 1.0 CB B:HIS182 4.5 93.2 1.0 ND2 B:ASN180 4.5 81.9 1.0 CA B:ASN180 4.6 78.7 1.0 O B:VAL72 4.6 130.1 1.0 CA B:HIS74 4.6 189.9 1.0 O B:HIS74 4.8 232.6 1.0 C B:ALA73 4.8 112.4 1.0 N B:HIS182 4.8 234.0 1.0 C B:HIS74 4.8 307.3 1.0 CA B:ALA73 4.8 63.4 1.0 CD2 B:LEU191 4.9 103.8 1.0

Copper binding site 3 out of 3 in the Sdbc DR_0644 Subunit, Only-Cu Superoxide Dismutase


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Sdbc DR_0644 Subunit, Only-Cu Superoxide Dismutase within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu301 b:30.0 occ:1.00 NE2 C:HIS182 1.6 55.9 1.0 CD2 C:HIS76 2.3 127.2 1.0 CE1 C:HIS74 2.4 188.8 1.0 NE2 C:HIS76 2.5 231.4 1.0 CD2 C:HIS182 2.5 49.9 1.0 ND1 C:HIS74 2.6 250.0 1.0 CE1 C:HIS182 2.7 72.2 1.0 CB C:ASN180 3.4 96.7 1.0 O C:ASN180 3.5 130.3 1.0 NE2 C:HIS74 3.5 162.4 1.0 CG C:HIS76 3.6 231.3 1.0 CG C:HIS182 3.7 83.9 1.0 ND1 C:HIS182 3.7 116.8 1.0 CG C:HIS74 3.8 279.1 1.0 CE1 C:HIS76 3.8 258.8 1.0 CG C:ASN180 4.1 151.2 1.0 ND2 C:ASN180 4.1 81.9 1.0 C C:ASN180 4.1 153.9 1.0 CD2 C:HIS74 4.2 109.0 1.0 CA C:ASN180 4.2 78.7 1.0 ND1 C:HIS76 4.4 175.4 1.0 O C:HIS74 4.5 232.6 1.0 CD1 C:LEU191 4.6 141.3 1.0 N C:HIS74 4.6 164.9 1.0 CB C:HIS76 4.7 219.2 1.0 N C:ASN180 4.7 307.9 1.0 CB C:ALA146 4.8 126.0 1.0 C C:HIS74 4.8 307.3 1.0 CB C:HIS74 4.9 113.6 1.0 CA C:HIS74 5.0 189.9 1.0

D.Farci, A.T.Graca, L.Iesu, D.De Sanctis, D.Piano. The Sdbc Is Active in Quenching Oxidative Conditions and Bridges the Cell Envelope Layers in Deinococcus Radiodurans. J.Biol.Chem. V. 299 02784 2023.
ISSN: ESSN 1083-351X
PubMed: 36502921
DOI: 10.1016/J.JBC.2022.102784