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Copper in PDB 7zjb: Structural and Functional Characterization of the Bacterial Lytic Polysaccharide Monooxygenase SCLPMO10D

Protein crystallography data

The structure of Structural and Functional Characterization of the Bacterial Lytic Polysaccharide Monooxygenase SCLPMO10D, PDB code: 7zjb was solved by A.K.Votvik, A.K.Rohr, A.A.Stepnov, B.Bissaro, M.Sorlie, V.G.H.Eijsink, Z.Forsberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.81 / 1.37
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 59.08, 59.08, 145.718, 90, 90, 90
R / Rfree (%) 12.9 / 15.2

Other elements in 7zjb:

The structure of Structural and Functional Characterization of the Bacterial Lytic Polysaccharide Monooxygenase SCLPMO10D also contains other interesting chemical elements:

Sodium (Na) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the Structural and Functional Characterization of the Bacterial Lytic Polysaccharide Monooxygenase SCLPMO10D (pdb code 7zjb). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Structural and Functional Characterization of the Bacterial Lytic Polysaccharide Monooxygenase SCLPMO10D, PDB code: 7zjb:

Copper binding site 1 out of 1 in 7zjb

Go back to Copper Binding Sites List in 7zjb
Copper binding site 1 out of 1 in the Structural and Functional Characterization of the Bacterial Lytic Polysaccharide Monooxygenase SCLPMO10D


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structural and Functional Characterization of the Bacterial Lytic Polysaccharide Monooxygenase SCLPMO10D within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu201

b:30.8
occ:1.00
ND1 B:HIS1 1.9 28.1 1.0
NE2 B:HIS101 2.0 29.0 1.0
N B:HIS1 2.2 25.3 1.0
CE1 B:HIS1 2.9 37.2 1.0
CG B:HIS1 3.0 29.9 1.0
CD2 B:HIS101 3.0 29.4 1.0
CE1 B:HIS101 3.1 32.6 1.0
CA B:HIS1 3.2 24.9 1.0
CB B:HIS1 3.3 24.1 1.0
CZ B:PHE172 3.3 31.6 1.0
CB B:ALA99 3.8 31.3 1.0
O B:ALA99 3.9 26.7 1.0
CE2 B:PHE172 4.0 29.8 1.0
CE1 B:PHE172 4.0 30.3 1.0
CD2 B:HIS1 4.1 29.8 1.0
NE2 B:HIS1 4.1 31.6 1.0
CG B:HIS101 4.2 29.9 1.0
ND1 B:HIS101 4.2 31.3 1.0
OE1 B:GLU170 4.4 37.7 1.0
C B:HIS1 4.5 23.0 1.0
C B:ALA99 4.7 27.2 1.0
CA B:ALA99 4.7 26.7 1.0
O B:HIS1 4.9 22.9 1.0

Reference:

A.K.Votvik, A.K.Rohr, B.Bissaro, A.A.Stepnov, M.Sorlie, V.G.H.Eijsink, Z.Forsberg. Structural and Functional Characterization of the Catalytic Domain of A Cell-Wall Anchored Bacterial Lytic Polysaccharide Monooxygenase From Streptomyces Coelicolor. Sci Rep V. 13 5345 2023.
ISSN: ESSN 2045-2322
PubMed: 37005446
DOI: 10.1038/S41598-023-32263-7
Page generated: Wed Jul 31 09:30:09 2024

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