Copper in PDB 7ynf: Cca-Bound Alpha-Synuclein Fibrils
Copper Binding Sites:
The binding sites of Copper atom in the Cca-Bound Alpha-Synuclein Fibrils
(pdb code 7ynf). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 8 binding sites of Copper where determined in the
Cca-Bound Alpha-Synuclein Fibrils, PDB code: 7ynf:
Jump to Copper binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Copper binding site 1 out
of 8 in 7ynf
Go back to
Copper Binding Sites List in 7ynf
Copper binding site 1 out
of 8 in the Cca-Bound Alpha-Synuclein Fibrils
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Cca-Bound Alpha-Synuclein Fibrils within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu201
b:40.4
occ:1.00
|
CU1
|
A:V79201
|
0.0
|
40.4
|
1.0
|
|
N37
|
A:V79201
|
1.9
|
40.4
|
1.0
|
|
N22
|
A:V79201
|
2.0
|
40.4
|
1.0
|
|
N10
|
A:V79201
|
2.0
|
40.4
|
1.0
|
|
N20
|
A:V79201
|
2.1
|
40.4
|
1.0
|
|
C11
|
A:V79201
|
2.8
|
40.4
|
1.0
|
|
C44
|
A:V79201
|
2.8
|
40.4
|
1.0
|
|
C09
|
A:V79201
|
3.0
|
40.4
|
1.0
|
|
C23
|
A:V79201
|
3.0
|
40.4
|
1.0
|
|
C19
|
A:V79201
|
3.0
|
40.4
|
1.0
|
|
C30
|
A:V79201
|
3.0
|
40.4
|
1.0
|
|
C38
|
A:V79201
|
3.1
|
40.4
|
1.0
|
|
C13
|
A:V79201
|
3.1
|
40.4
|
1.0
|
|
C45
|
A:V79201
|
3.4
|
40.4
|
1.0
|
|
C32
|
A:V79201
|
3.4
|
40.4
|
1.0
|
|
C12
|
A:V79201
|
3.4
|
40.4
|
1.0
|
|
C31
|
A:V79201
|
3.5
|
40.4
|
1.0
|
|
C02
|
A:V79201
|
4.1
|
40.4
|
1.0
|
|
C28
|
A:V79201
|
4.1
|
40.4
|
1.0
|
|
C24
|
A:V79201
|
4.2
|
40.4
|
1.0
|
|
C03
|
A:V79201
|
4.2
|
40.4
|
1.0
|
|
C42
|
A:V79201
|
4.2
|
40.4
|
1.0
|
|
C39
|
A:V79201
|
4.2
|
40.4
|
1.0
|
|
C16
|
A:V79201
|
4.3
|
40.4
|
1.0
|
|
C14
|
A:V79201
|
4.3
|
40.4
|
1.0
|
|
C33
|
A:V79201
|
4.6
|
40.4
|
1.0
|
|
Copper binding site 2 out
of 8 in 7ynf
Go back to
Copper Binding Sites List in 7ynf
Copper binding site 2 out
of 8 in the Cca-Bound Alpha-Synuclein Fibrils
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Cca-Bound Alpha-Synuclein Fibrils within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu202
b:79.1
occ:1.00
|
CU1
|
A:V79202
|
0.0
|
79.1
|
1.0
|
|
N37
|
A:V79202
|
1.9
|
79.1
|
1.0
|
|
N22
|
A:V79202
|
2.0
|
79.1
|
1.0
|
|
N10
|
A:V79202
|
2.0
|
79.1
|
1.0
|
|
N20
|
A:V79202
|
2.1
|
79.1
|
1.0
|
|
C11
|
A:V79202
|
2.8
|
79.1
|
1.0
|
|
C44
|
A:V79202
|
2.8
|
79.1
|
1.0
|
|
C09
|
A:V79202
|
3.0
|
79.1
|
1.0
|
|
C23
|
A:V79202
|
3.0
|
79.1
|
1.0
|
|
C19
|
A:V79202
|
3.0
|
79.1
|
1.0
|
|
C30
|
A:V79202
|
3.0
|
79.1
|
1.0
|
|
C38
|
A:V79202
|
3.1
|
79.1
|
1.0
|
|
C13
|
A:V79202
|
3.1
|
79.1
|
1.0
|
|
C45
|
A:V79202
|
3.4
|
79.1
|
1.0
|
|
C32
|
A:V79202
|
3.4
|
79.1
|
1.0
|
|
C12
|
A:V79202
|
3.4
|
79.1
|
1.0
|
|
C31
|
A:V79202
|
3.5
|
79.1
|
1.0
|
|
C02
|
A:V79202
|
4.1
|
79.1
|
1.0
|
|
C28
|
A:V79202
|
4.1
|
79.1
|
1.0
|
|
C24
|
A:V79202
|
4.2
|
79.1
|
1.0
|
|
C03
|
A:V79202
|
4.2
|
79.1
|
1.0
|
|
C42
|
A:V79202
|
4.2
|
79.1
|
1.0
|
|
C39
|
A:V79202
|
4.2
|
79.1
|
1.0
|
|
C16
|
A:V79202
|
4.3
|
79.1
|
1.0
|
|
C14
|
A:V79202
|
4.3
|
79.1
|
1.0
|
|
C33
|
A:V79202
|
4.6
|
79.1
|
1.0
|
|
Copper binding site 3 out
of 8 in 7ynf
Go back to
Copper Binding Sites List in 7ynf
Copper binding site 3 out
of 8 in the Cca-Bound Alpha-Synuclein Fibrils
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Cca-Bound Alpha-Synuclein Fibrils within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu203
b:63.4
occ:1.00
|
CU1
|
A:V79203
|
0.0
|
63.4
|
1.0
|
|
N37
|
A:V79203
|
1.9
|
63.4
|
1.0
|
|
N22
|
A:V79203
|
2.0
|
63.4
|
1.0
|
|
N10
|
A:V79203
|
2.0
|
63.4
|
1.0
|
|
N20
|
A:V79203
|
2.1
|
63.4
|
1.0
|
|
C11
|
A:V79203
|
2.8
|
63.4
|
1.0
|
|
C44
|
A:V79203
|
2.8
|
63.4
|
1.0
|
|
C09
|
A:V79203
|
3.0
|
63.4
|
1.0
|
|
C23
|
A:V79203
|
3.0
|
63.4
|
1.0
|
|
C19
|
A:V79203
|
3.0
|
63.4
|
1.0
|
|
C30
|
A:V79203
|
3.0
|
63.4
|
1.0
|
|
C38
|
A:V79203
|
3.1
|
63.4
|
1.0
|
|
C13
|
A:V79203
|
3.1
|
63.4
|
1.0
|
|
C45
|
A:V79203
|
3.4
|
63.4
|
1.0
|
|
C32
|
A:V79203
|
3.4
|
63.4
|
1.0
|
|
C12
|
A:V79203
|
3.4
|
63.4
|
1.0
|
|
C31
|
A:V79203
|
3.5
|
63.4
|
1.0
|
|
C02
|
A:V79203
|
4.1
|
63.4
|
1.0
|
|
C28
|
A:V79203
|
4.1
|
63.4
|
1.0
|
|
C24
|
A:V79203
|
4.2
|
63.4
|
1.0
|
|
C03
|
A:V79203
|
4.2
|
63.4
|
1.0
|
|
C42
|
A:V79203
|
4.2
|
63.4
|
1.0
|
|
C39
|
A:V79203
|
4.2
|
63.4
|
1.0
|
|
C16
|
A:V79203
|
4.3
|
63.4
|
1.0
|
|
C14
|
A:V79203
|
4.3
|
63.4
|
1.0
|
|
C33
|
A:V79203
|
4.6
|
63.4
|
1.0
|
|
Copper binding site 4 out
of 8 in 7ynf
Go back to
Copper Binding Sites List in 7ynf
Copper binding site 4 out
of 8 in the Cca-Bound Alpha-Synuclein Fibrils
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 4 of Cca-Bound Alpha-Synuclein Fibrils within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu204
b:91.3
occ:1.00
|
CU1
|
A:V79204
|
0.0
|
91.3
|
1.0
|
|
N37
|
A:V79204
|
1.9
|
91.3
|
1.0
|
|
N22
|
A:V79204
|
2.0
|
91.3
|
1.0
|
|
N10
|
A:V79204
|
2.0
|
91.3
|
1.0
|
|
N20
|
A:V79204
|
2.1
|
91.3
|
1.0
|
|
C11
|
A:V79204
|
2.8
|
91.3
|
1.0
|
|
C44
|
A:V79204
|
2.8
|
91.3
|
1.0
|
|
C09
|
A:V79204
|
3.0
|
91.3
|
1.0
|
|
C23
|
A:V79204
|
3.0
|
91.3
|
1.0
|
|
C19
|
A:V79204
|
3.0
|
91.3
|
1.0
|
|
C30
|
A:V79204
|
3.0
|
91.3
|
1.0
|
|
C38
|
A:V79204
|
3.1
|
91.3
|
1.0
|
|
C13
|
A:V79204
|
3.1
|
91.3
|
1.0
|
|
C45
|
A:V79204
|
3.4
|
91.3
|
1.0
|
|
C32
|
A:V79204
|
3.4
|
91.3
|
1.0
|
|
C12
|
A:V79204
|
3.4
|
91.3
|
1.0
|
|
C31
|
A:V79204
|
3.6
|
91.3
|
1.0
|
|
C02
|
A:V79204
|
4.1
|
91.3
|
1.0
|
|
C28
|
A:V79204
|
4.1
|
91.3
|
1.0
|
|
C24
|
A:V79204
|
4.2
|
91.3
|
1.0
|
|
C03
|
A:V79204
|
4.2
|
91.3
|
1.0
|
|
C42
|
A:V79204
|
4.2
|
91.3
|
1.0
|
|
C39
|
A:V79204
|
4.2
|
91.3
|
1.0
|
|
C14
|
A:V79204
|
4.3
|
91.3
|
1.0
|
|
C16
|
A:V79204
|
4.3
|
91.3
|
1.0
|
|
C33
|
A:V79204
|
4.6
|
91.3
|
1.0
|
|
Copper binding site 5 out
of 8 in 7ynf
Go back to
Copper Binding Sites List in 7ynf
Copper binding site 5 out
of 8 in the Cca-Bound Alpha-Synuclein Fibrils
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 5 of Cca-Bound Alpha-Synuclein Fibrils within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu201
b:40.4
occ:1.00
|
CU1
|
C:V79201
|
0.0
|
40.4
|
1.0
|
|
N37
|
C:V79201
|
1.9
|
40.4
|
1.0
|
|
N22
|
C:V79201
|
2.0
|
40.4
|
1.0
|
|
N10
|
C:V79201
|
2.0
|
40.4
|
1.0
|
|
N20
|
C:V79201
|
2.1
|
40.4
|
1.0
|
|
C11
|
C:V79201
|
2.8
|
40.4
|
1.0
|
|
C44
|
C:V79201
|
2.8
|
40.4
|
1.0
|
|
C09
|
C:V79201
|
3.0
|
40.4
|
1.0
|
|
C23
|
C:V79201
|
3.0
|
40.4
|
1.0
|
|
C19
|
C:V79201
|
3.0
|
40.4
|
1.0
|
|
C30
|
C:V79201
|
3.0
|
40.4
|
1.0
|
|
C38
|
C:V79201
|
3.1
|
40.4
|
1.0
|
|
C13
|
C:V79201
|
3.1
|
40.4
|
1.0
|
|
C45
|
C:V79201
|
3.4
|
40.4
|
1.0
|
|
C32
|
C:V79201
|
3.4
|
40.4
|
1.0
|
|
C12
|
C:V79201
|
3.4
|
40.4
|
1.0
|
|
C31
|
C:V79201
|
3.6
|
40.4
|
1.0
|
|
C02
|
C:V79201
|
4.1
|
40.4
|
1.0
|
|
C28
|
C:V79201
|
4.1
|
40.4
|
1.0
|
|
C24
|
C:V79201
|
4.2
|
40.4
|
1.0
|
|
C03
|
C:V79201
|
4.2
|
40.4
|
1.0
|
|
C42
|
C:V79201
|
4.2
|
40.4
|
1.0
|
|
C39
|
C:V79201
|
4.2
|
40.4
|
1.0
|
|
C14
|
C:V79201
|
4.3
|
40.4
|
1.0
|
|
C16
|
C:V79201
|
4.3
|
40.4
|
1.0
|
|
C33
|
C:V79201
|
4.6
|
40.4
|
1.0
|
|
Copper binding site 6 out
of 8 in 7ynf
Go back to
Copper Binding Sites List in 7ynf
Copper binding site 6 out
of 8 in the Cca-Bound Alpha-Synuclein Fibrils
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 6 of Cca-Bound Alpha-Synuclein Fibrils within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu202
b:63.3
occ:1.00
|
CU1
|
C:V79202
|
0.0
|
63.3
|
1.0
|
|
N37
|
C:V79202
|
1.9
|
63.3
|
1.0
|
|
N22
|
C:V79202
|
2.0
|
63.3
|
1.0
|
|
N10
|
C:V79202
|
2.0
|
63.3
|
1.0
|
|
N20
|
C:V79202
|
2.1
|
63.3
|
1.0
|
|
C11
|
C:V79202
|
2.8
|
63.3
|
1.0
|
|
C44
|
C:V79202
|
2.8
|
63.3
|
1.0
|
|
C09
|
C:V79202
|
3.0
|
63.3
|
1.0
|
|
C23
|
C:V79202
|
3.0
|
63.3
|
1.0
|
|
C19
|
C:V79202
|
3.0
|
63.3
|
1.0
|
|
C30
|
C:V79202
|
3.0
|
63.3
|
1.0
|
|
C38
|
C:V79202
|
3.1
|
63.3
|
1.0
|
|
C13
|
C:V79202
|
3.1
|
63.3
|
1.0
|
|
C45
|
C:V79202
|
3.4
|
63.3
|
1.0
|
|
C32
|
C:V79202
|
3.4
|
63.3
|
1.0
|
|
C12
|
C:V79202
|
3.4
|
63.3
|
1.0
|
|
C31
|
C:V79202
|
3.6
|
63.3
|
1.0
|
|
C02
|
C:V79202
|
4.1
|
63.3
|
1.0
|
|
C28
|
C:V79202
|
4.1
|
63.3
|
1.0
|
|
C24
|
C:V79202
|
4.2
|
63.3
|
1.0
|
|
C03
|
C:V79202
|
4.2
|
63.3
|
1.0
|
|
C42
|
C:V79202
|
4.2
|
63.3
|
1.0
|
|
C39
|
C:V79202
|
4.2
|
63.3
|
1.0
|
|
C16
|
C:V79202
|
4.3
|
63.3
|
1.0
|
|
C14
|
C:V79202
|
4.3
|
63.3
|
1.0
|
|
C33
|
C:V79202
|
4.6
|
63.3
|
1.0
|
|
Copper binding site 7 out
of 8 in 7ynf
Go back to
Copper Binding Sites List in 7ynf
Copper binding site 7 out
of 8 in the Cca-Bound Alpha-Synuclein Fibrils
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 7 of Cca-Bound Alpha-Synuclein Fibrils within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu203
b:88.1
occ:1.00
|
CU1
|
C:V79203
|
0.0
|
88.1
|
1.0
|
|
N37
|
C:V79203
|
1.9
|
88.1
|
1.0
|
|
N22
|
C:V79203
|
2.0
|
88.1
|
1.0
|
|
N10
|
C:V79203
|
2.0
|
88.1
|
1.0
|
|
N20
|
C:V79203
|
2.1
|
88.1
|
1.0
|
|
C11
|
C:V79203
|
2.8
|
88.1
|
1.0
|
|
C44
|
C:V79203
|
2.8
|
88.1
|
1.0
|
|
C09
|
C:V79203
|
3.0
|
88.1
|
1.0
|
|
C23
|
C:V79203
|
3.0
|
88.1
|
1.0
|
|
C19
|
C:V79203
|
3.0
|
88.1
|
1.0
|
|
C30
|
C:V79203
|
3.0
|
88.1
|
1.0
|
|
C38
|
C:V79203
|
3.1
|
88.1
|
1.0
|
|
C13
|
C:V79203
|
3.1
|
88.1
|
1.0
|
|
C45
|
C:V79203
|
3.4
|
88.1
|
1.0
|
|
C32
|
C:V79203
|
3.4
|
88.1
|
1.0
|
|
C12
|
C:V79203
|
3.4
|
88.1
|
1.0
|
|
C31
|
C:V79203
|
3.6
|
88.1
|
1.0
|
|
C02
|
C:V79203
|
4.1
|
88.1
|
1.0
|
|
C28
|
C:V79203
|
4.1
|
88.1
|
1.0
|
|
C24
|
C:V79203
|
4.2
|
88.1
|
1.0
|
|
C03
|
C:V79203
|
4.2
|
88.1
|
1.0
|
|
C42
|
C:V79203
|
4.2
|
88.1
|
1.0
|
|
C39
|
C:V79203
|
4.2
|
88.1
|
1.0
|
|
C16
|
C:V79203
|
4.3
|
88.1
|
1.0
|
|
C14
|
C:V79203
|
4.3
|
88.1
|
1.0
|
|
C33
|
C:V79203
|
4.6
|
88.1
|
1.0
|
|
Copper binding site 8 out
of 8 in 7ynf
Go back to
Copper Binding Sites List in 7ynf
Copper binding site 8 out
of 8 in the Cca-Bound Alpha-Synuclein Fibrils
 Mono view
 Stereo pair view
|
|
A full contact list of Copper with other atoms in the Cu binding
site number 8 of Cca-Bound Alpha-Synuclein Fibrils within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cu201
b:78.5
occ:1.00
|
CU1
|
D:V79201
|
0.0
|
78.5
|
1.0
|
|
N37
|
D:V79201
|
1.9
|
78.5
|
1.0
|
|
N22
|
D:V79201
|
2.0
|
78.5
|
1.0
|
|
N10
|
D:V79201
|
2.0
|
78.5
|
1.0
|
|
N20
|
D:V79201
|
2.1
|
78.5
|
1.0
|
|
C11
|
D:V79201
|
2.8
|
78.5
|
1.0
|
|
C44
|
D:V79201
|
2.8
|
78.5
|
1.0
|
|
C09
|
D:V79201
|
3.0
|
78.5
|
1.0
|
|
C23
|
D:V79201
|
3.0
|
78.5
|
1.0
|
|
C19
|
D:V79201
|
3.0
|
78.5
|
1.0
|
|
C30
|
D:V79201
|
3.0
|
78.5
|
1.0
|
|
C38
|
D:V79201
|
3.1
|
78.5
|
1.0
|
|
C13
|
D:V79201
|
3.1
|
78.5
|
1.0
|
|
C45
|
D:V79201
|
3.4
|
78.5
|
1.0
|
|
C32
|
D:V79201
|
3.4
|
78.5
|
1.0
|
|
C12
|
D:V79201
|
3.4
|
78.5
|
1.0
|
|
C31
|
D:V79201
|
3.5
|
78.5
|
1.0
|
|
C02
|
D:V79201
|
4.1
|
78.5
|
1.0
|
|
C28
|
D:V79201
|
4.1
|
78.5
|
1.0
|
|
C24
|
D:V79201
|
4.2
|
78.5
|
1.0
|
|
C03
|
D:V79201
|
4.2
|
78.5
|
1.0
|
|
C42
|
D:V79201
|
4.2
|
78.5
|
1.0
|
|
C39
|
D:V79201
|
4.2
|
78.5
|
1.0
|
|
C16
|
D:V79201
|
4.3
|
78.5
|
1.0
|
|
C14
|
D:V79201
|
4.3
|
78.5
|
1.0
|
|
C33
|
D:V79201
|
4.6
|
78.5
|
1.0
|
|
Reference:
Y.Q.Tao,
Q.Y.Zhao,
C.Liu,
D.Li.
Cca-Bound Alpha-Synuclein Fibrils To Be Published.
Page generated: Wed Jul 31 09:23:35 2024
|
