Copper in PDB 7y8c: Crystal Structure of Cota Laccase Complexed with Syringaldehyde

The structure of Crystal Structure of Cota Laccase Complexed with Syringaldehyde, PDB code: 7y8c was solved by Z.C.Liu, T.Xie, G.G.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.85 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	53.329, 119.344, 84.088, 90, 93.25, 90
R / Rfree (%)	17.2 / 21.9

The binding sites of Copper atom in the Crystal Structure of Cota Laccase Complexed with Syringaldehyde (pdb code 7y8c). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 8 binding sites of Copper where determined in the Crystal Structure of Cota Laccase Complexed with Syringaldehyde, PDB code: 7y8c:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Copper binding site 1 out of 8 in the Crystal Structure of Cota Laccase Complexed with Syringaldehyde


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Cota Laccase Complexed with Syringaldehyde within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu601 b:22.8 occ:0.91 ND1 A:HIS497 2.1 25.3 1.0 SG A:CYS492 2.1 23.9 1.0 ND1 A:HIS419 2.2 24.3 1.0 CG A:HIS497 3.1 25.5 1.0 CE1 A:HIS419 3.1 26.8 1.0 CE1 A:HIS497 3.1 25.6 1.0 CB A:CYS492 3.2 23.3 1.0 CG A:HIS419 3.2 25.3 1.0 SD A:MET502 3.3 27.3 1.0 CB A:HIS497 3.4 22.6 1.0 CB A:HIS419 3.6 24.4 1.0 CD1 A:ILE494 3.9 23.9 1.0 CE A:MET502 4.0 31.7 1.0 CA A:HIS419 4.1 25.6 1.0 CB A:ILE494 4.1 23.2 1.0 NE2 A:HIS497 4.2 24.2 1.0 CD2 A:HIS497 4.2 22.6 1.0 NE2 A:HIS419 4.2 28.2 1.0 CD2 A:HIS419 4.3 29.7 1.0 CG1 A:ILE494 4.4 23.3 1.0 CD1 A:LEU386 4.6 36.5 1.0 CA A:CYS492 4.6 22.7 1.0 CD A:PRO420 4.6 21.9 1.0 O A:HOH888 4.8 32.7 1.0 O A:THR418 4.8 29.1 1.0 CG2 A:ILE494 4.8 21.4 1.0 CG A:MET502 4.8 27.1 1.0 CA A:HIS497 4.9 25.6 1.0 N A:ILE494 5.0 20.9 1.0

Copper binding site 2 out of 8 in the Crystal Structure of Cota Laccase Complexed with Syringaldehyde


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Cota Laccase Complexed with Syringaldehyde within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu602 b:27.8 occ:0.16 NE2 A:HIS422 1.7 25.9 1.0 NE2 A:HIS105 1.8 27.5 1.0 CD2 A:HIS422 2.4 26.9 1.0 CD2 A:HIS105 2.6 24.9 1.0 CE1 A:HIS105 2.8 27.6 1.0 O A:HOH991 2.9 31.9 1.0 CE1 A:HIS422 2.9 22.7 1.0 NE2 A:HIS424 3.1 24.2 1.0 O A:HOH898 3.2 27.1 1.0 CD2 A:HIS424 3.2 26.7 1.0 ND1 A:HIS107 3.4 23.7 1.0 CU A:CU603 3.6 29.5 0.3 CG A:HIS107 3.7 23.7 1.0 CG A:HIS422 3.7 21.6 1.0 CE1 A:HIS424 3.8 25.2 1.0 CG A:HIS105 3.8 25.8 1.0 CE1 A:HIS107 3.8 22.2 1.0 CA A:HIS107 3.8 23.6 1.0 ND1 A:HIS105 3.8 26.4 1.0 ND1 A:HIS422 3.9 21.5 1.0 CG A:HIS424 3.9 27.1 1.0 CU A:CU604 4.0 25.3 0.6 CB A:HIS107 4.1 21.9 1.0 ND1 A:HIS424 4.1 28.5 1.0 N A:GLY108 4.3 26.3 1.0 CD2 A:HIS107 4.3 24.6 1.0 NE2 A:HIS107 4.3 24.4 1.0 C A:HIS107 4.6 24.0 1.0 CA A:HIS424 4.7 24.4 1.0 NE2 A:HIS491 4.7 30.6 1.0 N A:HIS107 4.8 21.6 1.0 CB A:HIS424 4.8 22.9 1.0 O A:HOH794 4.9 26.6 1.0 O A:LEU106 4.9 21.5 1.0

Copper binding site 3 out of 8 in the Crystal Structure of Cota Laccase Complexed with Syringaldehyde


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of Cota Laccase Complexed with Syringaldehyde within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu603 b:29.5 occ:0.29 NE2 A:HIS491 1.8 30.6 1.0 NE2 A:HIS424 1.9 24.2 1.0 NE2 A:HIS155 2.2 31.0 1.0 O A:HOH991 2.3 31.9 1.0 CE1 A:HIS424 2.8 25.2 1.0 CE1 A:HIS491 2.8 27.2 1.0 CD2 A:HIS491 2.8 25.0 1.0 CD2 A:HIS424 3.1 26.7 1.0 CD2 A:HIS155 3.1 31.8 1.0 CE1 A:HIS155 3.3 31.6 1.0 CU A:CU602 3.6 27.8 0.2 CD2 A:HIS422 3.7 26.9 1.0 O A:HOH757 3.9 31.7 1.0 ND1 A:HIS491 3.9 27.8 1.0 CG A:HIS491 3.9 28.0 1.0 ND1 A:HIS424 4.0 28.5 1.0 CD2 A:HIS105 4.0 24.9 1.0 CG2 A:VAL489 4.0 26.5 1.0 CG A:HIS424 4.1 27.1 1.0 NE2 A:HIS105 4.1 27.5 1.0 CG A:HIS155 4.3 28.4 1.0 ND1 A:HIS155 4.3 31.9 1.0 NE2 A:HIS422 4.4 25.9 1.0 CG A:HIS105 4.6 25.8 1.0 O A:HOH849 4.6 32.3 1.0 OE2 A:GLU498 4.7 33.7 1.0 CE1 A:HIS105 4.8 27.6 1.0 CG A:HIS422 4.8 21.6 1.0 CD2 A:HIS493 4.8 26.7 1.0 CU A:CU604 4.9 25.3 0.6 NE2 A:HIS493 4.9 26.6 1.0 OE1 A:GLU498 5.0 27.3 1.0

Copper binding site 4 out of 8 in the Crystal Structure of Cota Laccase Complexed with Syringaldehyde


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of Cota Laccase Complexed with Syringaldehyde within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu604 b:25.3 occ:0.55 ND1 A:HIS107 1.9 23.7 1.0 NE2 A:HIS153 2.1 21.9 1.0 NE2 A:HIS493 2.2 26.6 1.0 O A:HOH991 2.6 31.9 1.0 CE1 A:HIS107 2.9 22.2 1.0 CG A:HIS107 3.0 23.7 1.0 CE1 A:HIS493 3.0 23.1 1.0 CD2 A:HIS153 3.1 20.8 1.0 CE1 A:HIS153 3.1 23.3 1.0 CD2 A:HIS493 3.2 26.7 1.0 CB A:HIS107 3.3 21.9 1.0 CZ2 A:TRP151 3.8 21.4 1.0 CD2 A:HIS105 3.9 24.9 1.0 NE2 A:HIS107 4.0 24.4 1.0 O A:HOH757 4.0 31.7 1.0 CU A:CU602 4.0 27.8 0.2 CD2 A:HIS107 4.0 24.6 1.0 ND1 A:HIS493 4.1 20.1 1.0 CE2 A:TRP151 4.1 21.6 1.0 NE1 A:TRP151 4.2 21.0 1.0 CG A:HIS493 4.2 21.7 1.0 ND1 A:HIS153 4.2 21.8 1.0 CG A:HIS153 4.2 19.3 1.0 CB A:ALA297 4.4 18.3 1.0 CD2 A:HIS422 4.4 26.9 1.0 CA A:HIS107 4.5 23.6 1.0 NE2 A:HIS105 4.5 27.5 1.0 CH2 A:TRP151 4.5 21.4 1.0 NE2 A:HIS422 4.6 25.9 1.0 CU A:CU603 4.9 29.5 0.3

Copper binding site 5 out of 8 in the Crystal Structure of Cota Laccase Complexed with Syringaldehyde


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Crystal Structure of Cota Laccase Complexed with Syringaldehyde within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu601 b:21.6 occ:0.98 ND1 B:HIS497 2.1 21.1 1.0 ND1 B:HIS419 2.1 20.4 1.0 SG B:CYS492 2.2 19.6 1.0 CE1 B:HIS419 3.0 23.6 1.0 CG B:HIS497 3.0 24.0 1.0 CE1 B:HIS497 3.1 26.9 1.0 CG B:HIS419 3.2 24.1 1.0 SD B:MET502 3.2 21.5 1.0 CB B:CYS492 3.3 19.9 1.0 CB B:HIS497 3.3 18.1 1.0 CB B:HIS419 3.6 20.3 1.0 CD1 B:ILE494 3.8 19.6 1.0 CE B:MET502 3.8 22.2 1.0 CB B:ILE494 4.1 17.9 1.0 CA B:HIS419 4.1 20.2 1.0 NE2 B:HIS419 4.2 24.6 1.0 CD2 B:HIS497 4.2 24.9 1.0 NE2 B:HIS497 4.2 24.9 1.0 CD2 B:HIS419 4.3 25.2 1.0 CG1 B:ILE494 4.3 18.7 1.0 O B:HOH797 4.5 31.8 1.0 CD B:PRO420 4.6 22.7 1.0 CA B:CYS492 4.7 19.6 1.0 CG B:MET502 4.8 19.7 1.0 CG2 B:ILE494 4.8 16.7 1.0 CA B:HIS497 4.8 19.6 1.0 O B:THR418 4.9 24.3 1.0 N B:ILE494 4.9 18.9 1.0

Copper binding site 6 out of 8 in the Crystal Structure of Cota Laccase Complexed with Syringaldehyde


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Crystal Structure of Cota Laccase Complexed with Syringaldehyde within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu602 b:21.9 occ:0.12 NE2 B:HIS422 1.7 23.9 1.0 NE2 B:HIS105 1.7 22.8 1.0 O B:HOH787 2.6 22.1 1.0 CE1 B:HIS105 2.6 20.9 1.0 CE1 B:HIS422 2.6 20.7 1.0 CD2 B:HIS422 2.8 22.8 1.0 CD2 B:HIS105 2.9 24.1 1.0 CD2 B:HIS424 3.5 20.8 1.0 NE2 B:HIS424 3.5 22.6 1.0 CA B:HIS107 3.5 20.7 1.0 CG B:HIS107 3.6 23.9 1.0 ND1 B:HIS107 3.7 23.2 1.0 O B:HOH960 3.7 27.3 1.0 N B:GLY108 3.8 23.6 1.0 ND1 B:HIS422 3.8 22.2 1.0 ND1 B:HIS105 3.8 20.5 1.0 CG B:HIS424 3.8 22.3 1.0 CE1 B:HIS424 3.8 25.1 1.0 CG B:HIS422 3.9 22.2 1.0 CG B:HIS105 3.9 22.3 1.0 CB B:HIS107 4.0 19.6 1.0 CD2 B:HIS107 4.0 23.1 1.0 ND1 B:HIS424 4.0 23.6 1.0 CE1 B:HIS107 4.1 20.4 1.0 CU B:CU603 4.1 28.7 0.3 C B:HIS107 4.2 22.5 1.0 NE2 B:HIS107 4.2 22.9 1.0 CA B:HIS424 4.4 22.3 1.0 CU B:CU604 4.4 24.3 0.4 O B:HOH796 4.4 22.9 1.0 O B:LEU106 4.5 20.3 1.0 N B:HIS107 4.6 20.4 1.0 CB B:HIS424 4.6 20.1 1.0 O B:HOH847 4.6 22.9 1.0 O B:LEU423 4.8 20.2 1.0 C B:LEU106 4.9 20.2 1.0 CA B:GLY108 4.9 21.9 1.0 N B:HIS424 5.0 20.7 1.0

Copper binding site 7 out of 8 in the Crystal Structure of Cota Laccase Complexed with Syringaldehyde


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Crystal Structure of Cota Laccase Complexed with Syringaldehyde within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu603 b:28.7 occ:0.26 NE2 B:HIS424 1.8 22.6 1.0 NE2 B:HIS491 2.0 24.1 1.0 O B:HOH960 2.3 27.3 1.0 NE2 B:HIS155 2.5 32.2 1.0 CE1 B:HIS424 2.5 25.1 1.0 CD2 B:HIS491 2.9 24.4 1.0 CD2 B:HIS424 2.9 20.8 1.0 CE1 B:HIS491 3.0 23.6 1.0 CE1 B:HIS155 3.2 32.4 1.0 CD2 B:HIS155 3.3 33.4 1.0 CD2 B:HIS422 3.6 22.8 1.0 ND1 B:HIS424 3.7 23.6 1.0 CD2 B:HIS105 3.9 24.1 1.0 O B:HOH937 3.9 35.6 1.0 CG B:HIS424 4.0 22.3 1.0 NE2 B:HIS105 4.0 22.8 1.0 CG2 B:VAL489 4.0 23.6 1.0 CG B:HIS491 4.0 19.4 1.0 ND1 B:HIS491 4.0 21.8 1.0 CU B:CU602 4.1 21.9 0.1 NE2 B:HIS422 4.2 23.9 1.0 ND1 B:HIS155 4.2 34.2 1.0 CG B:HIS155 4.3 26.4 1.0 O B:HOH946 4.5 32.4 1.0 CG B:HIS105 4.6 22.3 1.0 CE1 B:HIS105 4.6 20.9 1.0 CG B:HIS422 4.8 22.2 1.0 OE1 B:GLU498 4.8 34.6 1.0 ND1 B:HIS105 5.0 20.5 1.0

Copper binding site 8 out of 8 in the Crystal Structure of Cota Laccase Complexed with Syringaldehyde


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Crystal Structure of Cota Laccase Complexed with Syringaldehyde within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu604 b:24.3 occ:0.44 ND1 B:HIS107 1.8 23.2 1.0 NE2 B:HIS153 2.0 22.7 1.0 NE2 B:HIS493 2.3 24.8 1.0 O B:HOH960 2.7 27.3 1.0 CE1 B:HIS107 2.8 20.4 1.0 CG B:HIS107 2.8 23.9 1.0 CE1 B:HIS153 2.9 24.4 1.0 CD2 B:HIS153 3.0 20.8 1.0 CD2 B:HIS493 3.2 25.2 1.0 CB B:HIS107 3.2 19.6 1.0 CE1 B:HIS493 3.3 22.0 1.0 CZ2 B:TRP151 3.8 17.1 1.0 CD2 B:HIS105 3.8 24.1 1.0 NE2 B:HIS107 3.9 22.9 1.0 CD2 B:HIS107 3.9 23.1 1.0 ND1 B:HIS153 4.0 23.0 1.0 CG B:HIS153 4.1 21.8 1.0 CE2 B:TRP151 4.1 21.5 1.0 O B:HOH937 4.2 35.6 1.0 NE1 B:TRP151 4.3 22.9 1.0 ND1 B:HIS493 4.3 21.0 1.0 CG B:HIS493 4.3 21.4 1.0 NE2 B:HIS105 4.4 22.8 1.0 CB B:ALA297 4.4 18.2 1.0 CD2 B:HIS422 4.4 22.8 1.0 CU B:CU602 4.4 21.9 0.1 CA B:HIS107 4.4 20.7 1.0 CH2 B:TRP151 4.5 19.7 1.0 NE2 B:HIS422 4.5 23.9 1.0 CG B:HIS105 5.0 22.3 1.0

Z.C.Liu, T.Xie, G.G.Wang. The Crystal Structure of Cota Laccase Complexed with Syringaldehyde To Be Published.