Copper in PDB 7y8b: Crystal Structure of Cota Laccase Complexed with Syringic Acid

The structure of Crystal Structure of Cota Laccase Complexed with Syringic Acid, PDB code: 7y8b was solved by Z.C.Liu, T.Xie, G.G.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.08 / 2.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	53.083, 118.859, 82.966, 90, 94.4, 90
R / Rfree (%)	16.6 / 21.2

The binding sites of Copper atom in the Crystal Structure of Cota Laccase Complexed with Syringic Acid (pdb code 7y8b). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 8 binding sites of Copper where determined in the Crystal Structure of Cota Laccase Complexed with Syringic Acid, PDB code: 7y8b:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Copper binding site 1 out of 8 in the Crystal Structure of Cota Laccase Complexed with Syringic Acid


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Cota Laccase Complexed with Syringic Acid within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu601 b:22.7 occ:1.00 ND1 A:HIS497 2.1 20.3 1.0 SG A:CYS492 2.1 24.1 1.0 ND1 A:HIS419 2.2 23.5 1.0 CG A:HIS497 3.1 20.1 1.0 CE1 A:HIS497 3.1 23.2 1.0 CG A:HIS419 3.2 23.2 1.0 CE1 A:HIS419 3.2 20.4 1.0 SD A:MET502 3.2 24.4 1.0 CB A:CYS492 3.3 21.1 1.0 CB A:HIS497 3.4 19.2 1.0 CB A:HIS419 3.5 18.8 1.0 CD1 A:ILE494 3.9 21.5 1.0 CE A:MET502 3.9 25.2 1.0 CA A:HIS419 4.1 20.9 1.0 CB A:ILE494 4.1 19.0 1.0 NE2 A:HIS497 4.2 22.1 1.0 CD2 A:HIS497 4.3 21.2 1.0 NE2 A:HIS419 4.3 22.1 1.0 CD2 A:HIS419 4.3 25.0 1.0 CD1 A:LEU386 4.4 28.9 1.0 CG1 A:ILE494 4.4 20.5 1.0 CA A:CYS492 4.7 22.7 1.0 CD A:PRO420 4.7 17.4 1.0 O A:HOH875 4.8 30.2 1.0 CG A:MET502 4.8 23.5 1.0 O A:THR418 4.9 21.3 1.0 CG2 A:ILE494 4.9 14.7 1.0 CA A:HIS497 4.9 19.0 1.0 N A:ILE494 4.9 21.0 1.0

Copper binding site 2 out of 8 in the Crystal Structure of Cota Laccase Complexed with Syringic Acid


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Cota Laccase Complexed with Syringic Acid within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu602 b:24.1 occ:0.17 NE2 A:HIS105 1.7 19.4 1.0 NE2 A:HIS422 1.8 21.6 1.0 CD2 A:HIS422 2.6 23.2 1.0 CE1 A:HIS105 2.7 22.5 1.0 CD2 A:HIS105 2.7 21.2 1.0 CE1 A:HIS422 2.9 22.3 1.0 NE2 A:HIS424 3.0 24.3 1.0 CD2 A:HIS424 3.1 19.5 1.0 O A:HOH798 3.1 25.6 1.0 O A:HOH941 3.4 28.3 1.0 CE1 A:HIS424 3.5 23.1 1.0 CG A:HIS424 3.6 18.4 1.0 ND1 A:HIS107 3.6 20.3 1.0 CU A:CU603 3.7 23.3 0.2 ND1 A:HIS105 3.8 19.7 1.0 CG A:HIS422 3.8 21.7 1.0 CG A:HIS105 3.8 20.4 1.0 ND1 A:HIS424 3.8 20.6 1.0 CG A:HIS107 3.9 17.4 1.0 ND1 A:HIS422 3.9 21.4 1.0 CA A:HIS107 3.9 17.8 1.0 CE1 A:HIS107 4.0 18.5 1.0 CU A:CU604 4.3 25.2 0.5 N A:GLY108 4.3 19.3 1.0 CD2 A:HIS107 4.3 20.4 1.0 CB A:HIS107 4.3 16.6 1.0 NE2 A:HIS107 4.4 20.4 1.0 CA A:HIS424 4.5 17.9 1.0 CB A:HIS424 4.6 20.3 1.0 C A:HIS107 4.7 18.7 1.0 O A:HOH733 4.8 26.6 1.0 NE2 A:HIS491 4.8 21.7 1.0 O A:LEU106 4.9 18.8 1.0 N A:HIS107 4.9 17.5 1.0 N A:HIS424 5.0 17.6 1.0

Copper binding site 3 out of 8 in the Crystal Structure of Cota Laccase Complexed with Syringic Acid


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of Cota Laccase Complexed with Syringic Acid within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu603 b:23.3 occ:0.25 NE2 A:HIS491 1.9 21.7 1.0 NE2 A:HIS424 2.0 24.3 1.0 NE2 A:HIS155 2.2 31.9 1.0 O A:HOH941 2.4 28.3 1.0 CE1 A:HIS424 2.7 23.1 1.0 CE1 A:HIS491 2.8 23.1 1.0 CD2 A:HIS491 2.9 25.9 1.0 CE1 A:HIS155 3.1 29.9 1.0 CD2 A:HIS424 3.2 19.5 1.0 CD2 A:HIS155 3.2 31.1 1.0 CU A:CU602 3.7 24.1 0.2 CD2 A:HIS422 3.8 23.2 1.0 O A:HOH883 3.8 26.3 1.0 CG2 A:VAL489 3.9 21.9 1.0 ND1 A:HIS491 3.9 21.9 1.0 ND1 A:HIS424 3.9 20.6 1.0 CG A:HIS491 4.0 22.1 1.0 CD2 A:HIS105 4.0 21.2 1.0 NE2 A:HIS105 4.1 19.4 1.0 CG A:HIS424 4.2 18.4 1.0 ND1 A:HIS155 4.2 32.8 1.0 CG A:HIS155 4.3 22.7 1.0 NE2 A:HIS422 4.4 21.6 1.0 O A:HOH744 4.4 30.0 1.0 CG A:HIS105 4.6 20.4 1.0 OE2 A:GLU498 4.7 27.0 1.0 CE1 A:HIS105 4.8 22.5 1.0 CG A:HIS422 4.9 21.7 1.0 CU A:CU604 5.0 25.2 0.5 CD2 A:HIS493 5.0 21.0 1.0 NE2 A:HIS493 5.0 23.9 1.0

Copper binding site 4 out of 8 in the Crystal Structure of Cota Laccase Complexed with Syringic Acid


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of Cota Laccase Complexed with Syringic Acid within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu604 b:25.2 occ:0.51 ND1 A:HIS107 1.8 20.3 1.0 NE2 A:HIS153 2.0 19.9 1.0 NE2 A:HIS493 2.2 23.9 1.0 O A:HOH941 2.7 28.3 1.0 CE1 A:HIS107 2.7 18.5 1.0 CG A:HIS107 2.9 17.4 1.0 CE1 A:HIS153 2.9 22.2 1.0 CD2 A:HIS153 3.0 18.9 1.0 CE1 A:HIS493 3.1 18.6 1.0 CD2 A:HIS493 3.2 21.0 1.0 CB A:HIS107 3.4 16.6 1.0 NE2 A:HIS107 3.8 20.4 1.0 CZ2 A:TRP151 3.9 15.2 1.0 CD2 A:HIS105 3.9 21.2 1.0 CD2 A:HIS107 3.9 20.4 1.0 O A:HOH883 4.0 26.3 1.0 ND1 A:HIS153 4.0 18.7 1.0 CG A:HIS153 4.1 15.9 1.0 CE2 A:TRP151 4.2 18.1 1.0 ND1 A:HIS493 4.2 19.1 1.0 CU A:CU602 4.3 24.1 0.2 CG A:HIS493 4.3 19.7 1.0 NE1 A:TRP151 4.3 19.2 1.0 CB A:ALA297 4.4 17.9 1.0 CD2 A:HIS422 4.4 23.2 1.0 NE2 A:HIS105 4.5 19.4 1.0 CA A:HIS107 4.5 17.8 1.0 NE2 A:HIS422 4.6 21.6 1.0 CH2 A:TRP151 4.6 13.5 1.0 CU A:CU603 5.0 23.3 0.2

Copper binding site 5 out of 8 in the Crystal Structure of Cota Laccase Complexed with Syringic Acid


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Crystal Structure of Cota Laccase Complexed with Syringic Acid within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu601 b:23.4 occ:1.00 ND1 B:HIS497 2.1 20.5 1.0 ND1 B:HIS419 2.2 23.4 1.0 SG B:CYS492 2.3 19.9 1.0 CE1 B:HIS419 3.0 23.4 1.0 CG B:HIS497 3.0 21.3 1.0 CE1 B:HIS497 3.1 21.8 1.0 SD B:MET502 3.2 23.1 1.0 CB B:CYS492 3.2 20.0 1.0 CG B:HIS419 3.2 21.5 1.0 CB B:HIS497 3.3 20.0 1.0 CB B:HIS419 3.6 17.8 1.0 CD1 B:ILE494 3.9 18.1 1.0 CE B:MET502 3.9 26.9 1.0 CB B:ILE494 4.1 18.1 1.0 CA B:HIS419 4.1 20.9 1.0 NE2 B:HIS419 4.2 25.6 1.0 CD2 B:HIS497 4.2 22.4 1.0 NE2 B:HIS497 4.2 23.9 1.0 CD2 B:HIS419 4.3 23.9 1.0 CG1 B:ILE494 4.4 20.3 1.0 O B:HOH811 4.6 28.1 1.0 CA B:CYS492 4.6 17.0 1.0 CD B:PRO420 4.7 24.9 1.0 CG B:MET502 4.8 21.9 1.0 CA B:HIS497 4.8 22.7 1.0 O B:THR418 4.9 21.4 1.0 N B:ILE494 4.9 19.2 1.0 CG2 B:ILE494 4.9 18.2 1.0

Copper binding site 6 out of 8 in the Crystal Structure of Cota Laccase Complexed with Syringic Acid


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Crystal Structure of Cota Laccase Complexed with Syringic Acid within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu602 b:21.4 occ:0.17 NE2 B:HIS105 1.7 23.3 1.0 NE2 B:HIS422 1.7 22.1 1.0 CD2 B:HIS422 2.5 20.2 1.0 CE1 B:HIS105 2.7 20.6 1.0 CD2 B:HIS105 2.8 19.4 1.0 CE1 B:HIS422 2.9 17.7 1.0 O B:HOH773 3.1 23.9 1.0 ND1 B:HIS107 3.2 21.7 1.0 O B:HOH962 3.3 28.1 1.0 CG B:HIS107 3.4 20.3 1.0 NE2 B:HIS424 3.5 20.0 1.0 CD2 B:HIS424 3.6 19.2 1.0 CA B:HIS107 3.6 21.8 1.0 CE1 B:HIS107 3.6 19.4 1.0 CG B:HIS422 3.7 18.6 1.0 ND1 B:HIS105 3.8 18.1 1.0 CU B:CU603 3.8 24.1 0.2 CB B:HIS107 3.8 18.1 1.0 ND1 B:HIS422 3.8 19.0 1.0 CG B:HIS105 3.8 19.9 1.0 CD2 B:HIS107 3.9 19.0 1.0 CE1 B:HIS424 3.9 21.6 1.0 CU B:CU604 4.0 21.8 0.4 NE2 B:HIS107 4.0 23.2 1.0 CG B:HIS424 4.1 19.6 1.0 N B:GLY108 4.1 20.0 1.0 ND1 B:HIS424 4.3 23.1 1.0 C B:HIS107 4.3 18.5 1.0 N B:HIS107 4.6 18.6 1.0 O B:LEU106 4.7 17.7 1.0 CA B:HIS424 4.8 18.6 1.0 O B:HOH782 4.9 21.2 1.0 CB B:HIS424 5.0 18.7 1.0

Copper binding site 7 out of 8 in the Crystal Structure of Cota Laccase Complexed with Syringic Acid


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Crystal Structure of Cota Laccase Complexed with Syringic Acid within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu603 b:24.1 occ:0.18 NE2 B:HIS491 1.8 23.4 1.0 NE2 B:HIS424 1.8 20.0 1.0 O B:HOH962 2.2 28.1 1.0 NE2 B:HIS155 2.3 28.1 1.0 CE1 B:HIS424 2.7 21.6 1.0 CE1 B:HIS491 2.8 21.1 1.0 CD2 B:HIS491 2.8 21.1 1.0 CD2 B:HIS424 3.0 19.2 1.0 CD2 B:HIS155 3.2 28.6 1.0 CE1 B:HIS155 3.3 25.0 1.0 CD2 B:HIS422 3.5 20.2 1.0 CU B:CU602 3.8 21.4 0.2 ND1 B:HIS424 3.8 23.1 1.0 ND1 B:HIS491 3.9 20.1 1.0 CG B:HIS491 3.9 18.1 1.0 CD2 B:HIS105 4.0 19.4 1.0 NE2 B:HIS105 4.0 23.3 1.0 CG B:HIS424 4.0 19.6 1.0 O B:HOH816 4.2 29.0 1.0 CG2 B:VAL489 4.2 22.8 1.0 NE2 B:HIS422 4.2 22.1 1.0 ND1 B:HIS155 4.4 24.8 1.0 CG B:HIS155 4.4 22.2 1.0 CE1 B:HIS105 4.6 20.6 1.0 CG B:HIS105 4.6 19.9 1.0 CG B:HIS422 4.6 18.6 1.0 O B:HOH896 4.7 27.2 1.0 CU B:CU604 4.9 21.8 0.4 CD2 B:HIS493 4.9 21.4 1.0 OE2 B:GLU498 4.9 27.2 1.0 ND1 B:HIS105 5.0 18.1 1.0

Copper binding site 8 out of 8 in the Crystal Structure of Cota Laccase Complexed with Syringic Acid


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Crystal Structure of Cota Laccase Complexed with Syringic Acid within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu604 b:21.8 occ:0.39 ND1 B:HIS107 1.8 21.7 1.0 NE2 B:HIS153 1.9 18.3 1.0 NE2 B:HIS493 2.3 19.5 1.0 CE1 B:HIS107 2.7 19.4 1.0 O B:HOH962 2.8 28.1 1.0 CE1 B:HIS153 2.8 20.2 1.0 CG B:HIS107 2.9 20.3 1.0 CD2 B:HIS153 3.0 16.9 1.0 CD2 B:HIS493 3.2 21.4 1.0 CE1 B:HIS493 3.2 19.9 1.0 CB B:HIS107 3.4 18.1 1.0 CZ2 B:TRP151 3.7 16.9 1.0 NE2 B:HIS107 3.9 23.2 1.0 CD2 B:HIS105 3.9 19.4 1.0 ND1 B:HIS153 4.0 17.3 1.0 CD2 B:HIS107 4.0 19.0 1.0 CU B:CU602 4.0 21.4 0.2 CE2 B:TRP151 4.0 19.6 1.0 O B:HOH816 4.1 29.0 1.0 CG B:HIS153 4.1 16.4 1.0 NE1 B:TRP151 4.1 20.4 1.0 ND1 B:HIS493 4.3 19.3 1.0 CG B:HIS493 4.3 20.2 1.0 NE2 B:HIS105 4.4 23.3 1.0 CB B:ALA297 4.4 16.5 1.0 CH2 B:TRP151 4.4 14.9 1.0 CD2 B:HIS422 4.5 20.2 1.0 CA B:HIS107 4.6 21.8 1.0 NE2 B:HIS422 4.6 22.1 1.0 CU B:CU603 4.9 24.1 0.2 CD2 B:TRP151 5.0 18.6 1.0

Z.C.Liu, T.Xie, G.G.Wang. The Crystal Structure of Cota Laccase Complexed with Syringic Acid To Be Published.