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Copper in PDB 7tfq: Crystal Structure of the Pirin Family Protein Redox-Sensitive Bicupin Yhak Bound to Copper Ion From Yersinia Pestis

Protein crystallography data

The structure of Crystal Structure of the Pirin Family Protein Redox-Sensitive Bicupin Yhak Bound to Copper Ion From Yersinia Pestis, PDB code: 7tfq was solved by Y.Kim, G.Chhor, M.Endres, G.Babnigg, O.Schneewind, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.76 / 1.75
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 67.133, 100.737, 45.498, 90, 90, 90
R / Rfree (%) 16.6 / 19.6

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of the Pirin Family Protein Redox-Sensitive Bicupin Yhak Bound to Copper Ion From Yersinia Pestis (pdb code 7tfq). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Crystal Structure of the Pirin Family Protein Redox-Sensitive Bicupin Yhak Bound to Copper Ion From Yersinia Pestis, PDB code: 7tfq:

Copper binding site 1 out of 1 in 7tfq

Go back to Copper Binding Sites List in 7tfq
Copper binding site 1 out of 1 in the Crystal Structure of the Pirin Family Protein Redox-Sensitive Bicupin Yhak Bound to Copper Ion From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of the Pirin Family Protein Redox-Sensitive Bicupin Yhak Bound to Copper Ion From Yersinia Pestis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu301

b:22.4
occ:1.00
NE2 A:HIS63 2.0 17.7 1.0
NE2 A:HIS61 2.0 17.9 1.0
NE2 A:HIS105 2.1 16.0 1.0
O3 A:SIN304 2.4 43.2 1.0
C4 A:SIN304 2.8 59.2 1.0
O4 A:SIN304 2.9 59.7 1.0
CD2 A:HIS63 2.9 17.1 1.0
CD2 A:HIS61 2.9 16.4 1.0
CE1 A:HIS63 3.0 16.3 1.0
CE1 A:HIS61 3.0 20.1 1.0
CE1 A:HIS105 3.1 18.6 1.0
CD2 A:HIS105 3.1 22.7 1.0
CG A:HIS63 4.0 12.1 1.0
C3 A:SIN304 4.0 39.6 1.0
ND1 A:HIS63 4.1 11.9 1.0
CG A:HIS61 4.1 16.2 1.0
ND1 A:HIS61 4.1 18.7 1.0
O A:HOH405 4.1 44.7 1.0
ND1 A:HIS105 4.2 17.9 1.0
CG A:HIS105 4.2 23.0 1.0

Reference:

Y.Kim, G.Chhor, M.Endres, G.Babnigg, O.Schneewind, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of the Pirin Family Protein Redox-Sensitive Bicupin Yhak Bound to Copper Ion From Yersinia Pestis To Be Published.
Page generated: Wed Jul 31 09:15:29 2024

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