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Copper in PDB 7t4o: Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo Treated with Potassium Cyanide in A Native Lipid Nanodisc at 3.65 Angstrom Resolution

Enzymatic activity of Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo Treated with Potassium Cyanide in A Native Lipid Nanodisc at 3.65 Angstrom Resolution

All present enzymatic activity of Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo Treated with Potassium Cyanide in A Native Lipid Nanodisc at 3.65 Angstrom Resolution:
1.14.13.25; 1.14.18.3;

Copper Binding Sites:

The binding sites of Copper atom in the Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo Treated with Potassium Cyanide in A Native Lipid Nanodisc at 3.65 Angstrom Resolution (pdb code 7t4o). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 5 binding sites of Copper where determined in the Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo Treated with Potassium Cyanide in A Native Lipid Nanodisc at 3.65 Angstrom Resolution, PDB code: 7t4o:
Jump to Copper binding site number: 1; 2; 3; 4; 5;

Copper binding site 1 out of 5 in 7t4o

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Copper binding site 1 out of 5 in the Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo Treated with Potassium Cyanide in A Native Lipid Nanodisc at 3.65 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo Treated with Potassium Cyanide in A Native Lipid Nanodisc at 3.65 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu501

b:92.5
occ:1.00
 ND1 A:HIS33 1.8 49.3 1.0
NE2 A:HIS139 1.8 76.0 1.0
ND1 A:HIS137 2.5 76.0 1.0
CE1 A:HIS139 2.6 76.0 1.0
CE1 A:HIS33 2.7 49.3 1.0
CG A:HIS33 2.8 49.3 1.0
N A:HIS33 2.8 49.3 1.0
CD2 A:HIS139 2.9 76.0 1.0
CB A:HIS33 3.2 49.3 1.0
CA A:HIS33 3.2 49.3 1.0
CG A:HIS137 3.2 76.0 1.0
CE1 A:HIS137 3.3 76.0 1.0
CB A:HIS137 3.5 76.0 1.0
ND1 A:HIS139 3.7 76.0 1.0
NE2 A:HIS33 3.8 49.3 1.0
CD2 A:HIS33 3.8 49.3 1.0
CG A:HIS139 3.9 76.0 1.0
CD2 A:HIS137 4.2 76.0 1.0
NE2 A:HIS137 4.3 76.0 1.0
O A:HIS137 4.4 76.0 1.0
C A:HIS33 4.7 49.3 1.0
CA A:HIS137 4.8 76.0 1.0
C A:HIS137 4.9 76.0 1.0

Copper binding site 2 out of 5 in 7t4o

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Copper binding site 2 out of 5 in the Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo Treated with Potassium Cyanide in A Native Lipid Nanodisc at 3.65 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo Treated with Potassium Cyanide in A Native Lipid Nanodisc at 3.65 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu502

b:88.5
occ:1.00
 ND1 A:HIS72 2.1 76.0 1.0
ND1 A:HIS48 2.1 76.0 1.0
OE1 A:GLN404 2.7 76.0 1.0
CE1 A:HIS48 2.9 76.0 1.0
CE1 A:HIS72 3.0 76.0 1.0
CG A:HIS48 3.0 76.0 1.0
CG A:HIS72 3.1 76.0 1.0
O A:HIS72 3.4 76.0 1.0
CB A:HIS48 3.5 76.0 1.0
CB A:HIS72 3.5 76.0 1.0
CD A:GLN404 3.6 76.0 1.0
C A:HIS72 3.9 76.0 1.0
NE2 A:HIS48 3.9 76.0 1.0
CD2 A:HIS48 4.0 76.0 1.0
NE2 A:GLN404 4.1 76.0 1.0
NE2 A:HIS72 4.1 76.0 1.0
CA A:PHE74 4.2 76.0 1.0
CD2 A:LEU390 4.2 76.0 1.0
CD2 A:HIS72 4.2 76.0 1.0
N A:PHE74 4.2 76.0 1.0
N A:HIS48 4.3 76.0 1.0
CA A:HIS72 4.3 76.0 1.0
C A:VAL73 4.4 76.0 1.0
O A:VAL73 4.5 76.0 1.0
CD1 A:PHE74 4.5 76.0 1.0
CA A:HIS48 4.5 76.0 1.0
CB A:PHE74 4.5 76.0 1.0
CG A:LEU390 4.6 76.0 1.0
CD1 A:LEU390 4.6 76.0 1.0
CG A:GLN404 4.7 76.0 1.0
N A:VAL73 4.7 76.0 1.0

Copper binding site 3 out of 5 in 7t4o

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Copper binding site 3 out of 5 in the Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo Treated with Potassium Cyanide in A Native Lipid Nanodisc at 3.65 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo Treated with Potassium Cyanide in A Native Lipid Nanodisc at 3.65 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu501

b:92.5
occ:1.00
 ND1 E:HIS33 1.8 49.3 1.0
NE2 E:HIS139 1.8 76.0 1.0
ND1 E:HIS137 2.5 76.0 1.0
CE1 E:HIS139 2.6 76.0 1.0
CE1 E:HIS33 2.7 49.3 1.0
CG E:HIS33 2.8 49.3 1.0
N E:HIS33 2.8 49.3 1.0
CD2 E:HIS139 2.9 76.0 1.0
CB E:HIS33 3.2 49.3 1.0
CA E:HIS33 3.2 49.3 1.0
CG E:HIS137 3.2 76.0 1.0
CE1 E:HIS137 3.3 76.0 1.0
CB E:HIS137 3.5 76.0 1.0
ND1 E:HIS139 3.7 76.0 1.0
NE2 E:HIS33 3.8 49.3 1.0
CD2 E:HIS33 3.8 49.3 1.0
CG E:HIS139 3.9 76.0 1.0
CD2 E:HIS137 4.2 76.0 1.0
NE2 E:HIS137 4.3 76.0 1.0
O E:HIS137 4.4 76.0 1.0
C E:HIS33 4.7 49.3 1.0
CA E:HIS137 4.8 76.0 1.0
C E:HIS137 4.9 76.0 1.0

Copper binding site 4 out of 5 in 7t4o

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Copper binding site 4 out of 5 in the Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo Treated with Potassium Cyanide in A Native Lipid Nanodisc at 3.65 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo Treated with Potassium Cyanide in A Native Lipid Nanodisc at 3.65 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu502

b:88.5
occ:1.00
 ND1 E:HIS72 2.1 76.0 1.0
ND1 E:HIS48 2.1 76.0 1.0
OE1 E:GLN404 2.7 76.0 1.0
CE1 E:HIS48 2.9 76.0 1.0
CE1 E:HIS72 3.0 76.0 1.0
CG E:HIS48 3.0 76.0 1.0
CG E:HIS72 3.1 76.0 1.0
O E:HIS72 3.4 76.0 1.0
CB E:HIS48 3.5 76.0 1.0
CB E:HIS72 3.5 76.0 1.0
CD E:GLN404 3.6 76.0 1.0
C E:HIS72 3.9 76.0 1.0
NE2 E:HIS48 3.9 76.0 1.0
CD2 E:HIS48 4.0 76.0 1.0
NE2 E:GLN404 4.1 76.0 1.0
NE2 E:HIS72 4.1 76.0 1.0
CA E:PHE74 4.2 76.0 1.0
CD2 E:LEU390 4.2 76.0 1.0
CD2 E:HIS72 4.2 76.0 1.0
N E:PHE74 4.2 76.0 1.0
N E:HIS48 4.3 76.0 1.0
CA E:HIS72 4.3 76.0 1.0
C E:VAL73 4.4 76.0 1.0
O E:VAL73 4.5 76.0 1.0
CD1 E:PHE74 4.5 76.0 1.0
CA E:HIS48 4.5 76.0 1.0
CB E:PHE74 4.5 76.0 1.0
CG E:LEU390 4.6 76.0 1.0
CD1 E:LEU390 4.6 76.0 1.0
CG E:GLN404 4.7 76.0 1.0
N E:VAL73 4.7 76.0 1.0

Copper binding site 5 out of 5 in 7t4o

Go back to Copper Binding Sites List in 7t4o
Copper binding site 5 out of 5 in the Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo Treated with Potassium Cyanide in A Native Lipid Nanodisc at 3.65 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo Treated with Potassium Cyanide in A Native Lipid Nanodisc at 3.65 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Cu501

b:92.5
occ:1.00
 ND1 I:HIS33 1.8 49.3 1.0
NE2 I:HIS139 1.8 76.0 1.0
ND1 I:HIS137 2.5 76.0 1.0
CE1 I:HIS139 2.6 76.0 1.0
CE1 I:HIS33 2.7 49.3 1.0
CG I:HIS33 2.8 49.3 1.0
N I:HIS33 2.8 49.3 1.0
CD2 I:HIS139 2.9 76.0 1.0
CB I:HIS33 3.2 49.3 1.0
CA I:HIS33 3.2 49.3 1.0
CG I:HIS137 3.2 76.0 1.0
CE1 I:HIS137 3.3 76.0 1.0
CB I:HIS137 3.5 76.0 1.0
ND1 I:HIS139 3.7 76.0 1.0
NE2 I:HIS33 3.8 49.3 1.0
CD2 I:HIS33 3.8 49.3 1.0
CG I:HIS139 3.9 76.0 1.0
CD2 I:HIS137 4.2 76.0 1.0
NE2 I:HIS137 4.3 76.0 1.0
O I:HIS137 4.4 76.0 1.0
C I:HIS33 4.7 49.3 1.0
CA I:HIS137 4.8 76.0 1.0
C I:HIS137 4.9 76.0 1.0

Reference:

C.W.Koo, F.J.Tucci, Y.He, A.C.Rosenzweig. Recovery of Particulate Methane Monooxygenase Structure and Activity in A Lipid Bilayer. Science V. 375 1287 2022.
ISSN: ESSN 1095-9203
PubMed: 35298269
DOI: 10.1126/SCIENCE.ABM3282
Page generated: Tue Apr 4 23:27:23 2023

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