Copper in PDB 7s4m: Cryoem Structure of Methylocystis Sp. Str. Rockwell Pmmo in A Popc Nanodisc at 2.42 Angstrom Resolution

The binding sites of Copper atom in the Cryoem Structure of Methylocystis Sp. Str. Rockwell Pmmo in A Popc Nanodisc at 2.42 Angstrom Resolution (pdb code 7s4m). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 6 binding sites of Copper where determined in the Cryoem Structure of Methylocystis Sp. Str. Rockwell Pmmo in A Popc Nanodisc at 2.42 Angstrom Resolution, PDB code: 7s4m:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6;

Copper binding site 1 out of 6 in the Cryoem Structure of Methylocystis Sp. Str. Rockwell Pmmo in A Popc Nanodisc at 2.42 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Cryoem Structure of Methylocystis Sp. Str. Rockwell Pmmo in A Popc Nanodisc at 2.42 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu501 b:177.4 occ:1.00 NE2 A:HIS135 2.1 132.1 1.0 ND1 A:HIS133 2.2 133.1 1.0 CG A:HIS29 2.3 152.8 1.0 ND1 A:HIS29 2.5 152.8 1.0 CA A:HIS29 2.6 152.8 1.0 CB A:HIS29 2.6 152.8 1.0 CD2 A:HIS29 3.0 152.8 1.0 CE1 A:HIS133 3.0 133.1 1.0 CD2 A:HIS135 3.1 132.1 1.0 CE1 A:HIS135 3.1 132.1 1.0 CE1 A:HIS29 3.1 152.8 1.0 CG A:HIS133 3.3 133.1 1.0 N A:HIS29 3.3 152.8 1.0 NE2 A:HIS29 3.4 152.8 1.0 CB A:HIS133 3.7 133.1 1.0 C A:HIS29 3.9 152.8 1.0 O A:HIS29 4.1 152.8 1.0 ND1 A:HIS135 4.2 132.1 1.0 NE2 A:HIS133 4.2 133.1 1.0 CG A:HIS135 4.2 132.1 1.0 CD2 A:HIS133 4.4 133.1 1.0 OE1 A:GLU31 4.4 148.2 1.0 O A:HIS133 4.5 133.1 1.0 OE2 A:GLU31 4.6 148.2 1.0 C A:HIS133 4.9 133.1 1.0 CD A:GLU31 4.9 148.2 1.0 CA A:HIS133 4.9 133.1 1.0 N A:GLY30 5.0 152.9 1.0

Copper binding site 2 out of 6 in the Cryoem Structure of Methylocystis Sp. Str. Rockwell Pmmo in A Popc Nanodisc at 2.42 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Cryoem Structure of Methylocystis Sp. Str. Rockwell Pmmo in A Popc Nanodisc at 2.42 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ G:Cu301 b:197.4 occ:1.00 NE2 G:HIS146 2.0 152.8 1.0 NE2 G:HIS133 2.1 152.6 1.0 OD2 G:ASP129 2.1 150.0 1.0 CE1 G:HIS133 2.4 152.6 1.0 CE1 G:HIS146 3.0 152.8 1.0 CG G:ASP129 3.0 150.0 1.0 CD2 G:HIS146 3.0 152.8 1.0 OD1 G:ASP129 3.2 150.0 1.0 CD2 G:HIS133 3.4 152.6 1.0 ND1 G:HIS133 3.7 152.6 1.0 ND1 G:HIS146 4.1 152.8 1.0 ND2 G:ASN200 4.1 174.0 1.0 CG G:HIS146 4.1 152.8 1.0 CG G:HIS133 4.2 152.6 1.0 CZ G:PHE150 4.2 151.5 1.0 CE2 G:PHE150 4.3 151.5 1.0 CB G:ASP129 4.4 150.0 1.0 NE G:ARG138 4.8 169.8 1.0 O G:ASP129 5.0 150.0 1.0

Copper binding site 3 out of 6 in the Cryoem Structure of Methylocystis Sp. Str. Rockwell Pmmo in A Popc Nanodisc at 2.42 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Cryoem Structure of Methylocystis Sp. Str. Rockwell Pmmo in A Popc Nanodisc at 2.42 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu301 b:191.7 occ:1.00 NE2 C:HIS146 2.0 156.6 1.0 OD2 C:ASP129 2.0 150.1 1.0 NE2 C:HIS133 2.1 154.9 1.0 CE1 C:HIS133 2.2 154.9 1.0 CE1 C:HIS146 2.9 156.6 1.0 CG C:ASP129 3.0 150.1 1.0 CD2 C:HIS146 3.0 156.6 1.0 OD1 C:ASN200 3.1 170.8 1.0 OD1 C:ASP129 3.3 150.1 1.0 NH2 C:ARG138 3.4 167.7 1.0 CD2 C:HIS133 3.5 154.9 1.0 ND1 C:HIS133 3.5 154.9 1.0 CZ C:ARG138 3.6 167.7 1.0 ND2 C:ASN200 3.8 170.8 1.0 CG C:ASN200 3.9 170.8 1.0 NH1 C:ARG138 4.0 167.7 1.0 ND1 C:HIS146 4.0 156.6 1.0 NE C:ARG138 4.1 167.7 1.0 CG C:HIS146 4.1 156.6 1.0 CG C:HIS133 4.2 154.9 1.0 CB C:ASP129 4.3 150.1 1.0 CE2 C:PHE150 4.3 155.1 1.0 CZ C:PHE150 4.4 155.1 1.0 CD C:ARG138 4.9 167.7 1.0

Copper binding site 4 out of 6 in the Cryoem Structure of Methylocystis Sp. Str. Rockwell Pmmo in A Popc Nanodisc at 2.42 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Cryoem Structure of Methylocystis Sp. Str. Rockwell Pmmo in A Popc Nanodisc at 2.42 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ K:Cu301 b:197.0 occ:1.00 OD2 K:ASP129 2.0 146.0 1.0 NE2 K:HIS146 2.0 152.1 1.0 CE1 K:HIS133 2.2 152.0 1.0 NE2 K:HIS133 2.2 152.0 1.0 CG K:ASP129 2.8 146.0 1.0 CD2 K:HIS146 2.9 152.1 1.0 CE1 K:HIS146 3.0 152.1 1.0 OD1 K:ASP129 3.1 146.0 1.0 ND1 K:HIS133 3.5 152.0 1.0 CD2 K:HIS133 3.6 152.0 1.0 ND2 K:ASN200 3.8 176.6 1.0 CZ K:PHE150 4.0 151.2 1.0 CE2 K:PHE150 4.0 151.2 1.0 CG K:HIS146 4.0 152.1 1.0 ND1 K:HIS146 4.0 152.1 1.0 CB K:ASP129 4.2 146.0 1.0 CG K:HIS133 4.2 152.0 1.0 OG K:SER145 4.9 150.2 1.0 CG K:ASN200 4.9 176.6 1.0 OE1 K:GLU149 4.9 145.1 1.0 NE K:ARG138 5.0 168.1 1.0

Copper binding site 5 out of 6 in the Cryoem Structure of Methylocystis Sp. Str. Rockwell Pmmo in A Popc Nanodisc at 2.42 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Cryoem Structure of Methylocystis Sp. Str. Rockwell Pmmo in A Popc Nanodisc at 2.42 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ E:Cu501 b:177.4 occ:1.00 NE2 E:HIS135 2.1 132.1 1.0 ND1 E:HIS133 2.2 133.1 1.0 CG E:HIS29 2.3 152.8 1.0 ND1 E:HIS29 2.5 152.8 1.0 CA E:HIS29 2.6 152.8 1.0 CB E:HIS29 2.6 152.8 1.0 CD2 E:HIS29 3.0 152.8 1.0 CE1 E:HIS133 3.0 133.1 1.0 CD2 E:HIS135 3.1 132.1 1.0 CE1 E:HIS135 3.1 132.1 1.0 CE1 E:HIS29 3.1 152.8 1.0 CG E:HIS133 3.3 133.1 1.0 N E:HIS29 3.3 152.8 1.0 NE2 E:HIS29 3.4 152.8 1.0 CB E:HIS133 3.7 133.1 1.0 C E:HIS29 3.9 152.8 1.0 O E:HIS29 4.1 152.8 1.0 ND1 E:HIS135 4.2 132.1 1.0 NE2 E:HIS133 4.2 133.1 1.0 CG E:HIS135 4.2 132.1 1.0 CD2 E:HIS133 4.4 133.1 1.0 OE1 E:GLU31 4.4 148.2 1.0 O E:HIS133 4.5 133.1 1.0 OE2 E:GLU31 4.6 148.2 1.0 C E:HIS133 4.9 133.1 1.0 CD E:GLU31 4.9 148.2 1.0 CA E:HIS133 4.9 133.1 1.0 N E:GLY30 5.0 152.9 1.0

Copper binding site 6 out of 6 in the Cryoem Structure of Methylocystis Sp. Str. Rockwell Pmmo in A Popc Nanodisc at 2.42 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Cryoem Structure of Methylocystis Sp. Str. Rockwell Pmmo in A Popc Nanodisc at 2.42 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ I:Cu501 b:177.4 occ:1.00 NE2 I:HIS135 2.1 132.1 1.0 ND1 I:HIS133 2.2 133.1 1.0 CG I:HIS29 2.3 152.8 1.0 ND1 I:HIS29 2.5 152.8 1.0 CA I:HIS29 2.6 152.8 1.0 CB I:HIS29 2.6 152.8 1.0 CD2 I:HIS29 3.0 152.8 1.0 CE1 I:HIS133 3.0 133.1 1.0 CD2 I:HIS135 3.1 132.1 1.0 CE1 I:HIS135 3.1 132.1 1.0 CE1 I:HIS29 3.1 152.8 1.0 CG I:HIS133 3.3 133.1 1.0 N I:HIS29 3.3 152.8 1.0 NE2 I:HIS29 3.4 152.8 1.0 CB I:HIS133 3.7 133.1 1.0 C I:HIS29 3.9 152.8 1.0 O I:HIS29 4.1 152.8 1.0 ND1 I:HIS135 4.2 132.1 1.0 NE2 I:HIS133 4.2 133.1 1.0 CG I:HIS135 4.2 132.1 1.0 CD2 I:HIS133 4.4 133.1 1.0 OE1 I:GLU31 4.4 148.2 1.0 O I:HIS133 4.5 133.1 1.0 OE2 I:GLU31 4.6 148.2 1.0 C I:HIS133 4.9 133.1 1.0 CD I:GLU31 4.9 148.2 1.0 CA I:HIS133 4.9 133.1 1.0 N I:GLY30 5.0 152.9 1.0

C.W.Koo, F.J.Tucci, Y.He, A.C.Rosenzweig. Recovery of Particulate Methane Monooxygenase Structure and Activity in A Lipid Bilayer. Science V. 375 1287 2022.
ISSN: ESSN 1095-9203
PubMed: 35298269
DOI: 10.1126/SCIENCE.ABM3282