Atomistry » Copper » PDB 7s1f-7xmb » 7s4h
Atomistry »
  Copper »
    PDB 7s1f-7xmb »
      7s4h »

Copper in PDB 7s4h: Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution

Enzymatic activity of Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution

All present enzymatic activity of Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution:
1.14.13.25; 1.14.18.3;

Copper Binding Sites:

The binding sites of Copper atom in the Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution (pdb code 7s4h). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 9 binding sites of Copper where determined in the Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution, PDB code: 7s4h:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Copper binding site 1 out of 9 in 7s4h

Go back to Copper Binding Sites List in 7s4h
Copper binding site 1 out of 9 in the Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu501

b:55.7
occ:1.00
 ND1 A:HIS33 2.1 49.3 1.0
NE2 A:HIS139 2.1 39.0 1.0
ND1 A:HIS137 2.3 39.0 1.0
N A:HIS33 2.5 49.3 1.0
CD2 A:HIS139 2.8 39.0 1.0
CG A:HIS33 3.0 49.3 1.0
CE1 A:HIS33 3.0 49.3 1.0
CA A:HIS33 3.0 49.3 1.0
CE1 A:HIS139 3.2 39.0 1.0
CG A:HIS137 3.2 39.0 1.0
CB A:HIS33 3.2 49.3 1.0
CE1 A:HIS137 3.3 39.0 1.0
CB A:HIS137 3.4 39.0 1.0
O A:HOH626 3.5 37.4 1.0
O A:HOH639 3.9 43.2 1.0
CD2 A:HIS33 4.1 49.3 1.0
CG A:HIS139 4.1 39.0 1.0
NE2 A:HIS33 4.1 49.3 1.0
O A:HIS137 4.1 39.0 1.0
OE1 A:GLU35 4.1 45.5 1.0
ND1 A:HIS139 4.2 39.0 1.0
CD2 A:HIS137 4.4 39.0 1.0
NE2 A:HIS137 4.4 39.0 1.0
C A:HIS137 4.5 39.0 1.0
C A:HIS33 4.5 49.3 1.0
CA A:HIS137 4.6 39.0 1.0
OE2 A:GLU35 4.6 45.5 1.0
O A:HOH680 4.6 40.7 1.0
CD A:GLU35 4.8 45.5 1.0

Copper binding site 2 out of 9 in 7s4h

Go back to Copper Binding Sites List in 7s4h
Copper binding site 2 out of 9 in the Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu502

b:57.7
occ:1.00
 ND1 A:HIS48 2.0 39.3 1.0
ND1 A:HIS72 2.0 39.0 1.0
OE1 A:GLN404 2.4 45.9 1.0
CE1 A:HIS48 2.8 39.3 1.0
CG A:HIS48 3.0 39.3 1.0
CE1 A:HIS72 3.0 39.0 1.0
CG A:HIS72 3.0 39.0 1.0
CB A:HIS72 3.3 39.0 1.0
O A:HIS72 3.4 39.0 1.0
CB A:HIS48 3.5 39.3 1.0
CD A:GLN404 3.6 45.9 1.0
C A:HIS72 3.9 39.0 1.0
NE2 A:HIS48 3.9 39.3 1.0
CD2 A:LEU390 4.0 43.1 1.0
CD2 A:HIS48 4.0 39.3 1.0
CA A:PHE74 4.1 40.1 1.0
NE2 A:HIS72 4.1 39.0 1.0
CD2 A:HIS72 4.1 39.0 1.0
N A:PHE74 4.2 40.1 1.0
CA A:HIS72 4.2 39.0 1.0
N A:HIS48 4.2 39.3 1.0
CB A:PHE74 4.3 40.1 1.0
NE2 A:GLN404 4.4 45.9 1.0
CD1 A:PHE74 4.4 40.1 1.0
C A:VAL73 4.4 39.0 1.0
CA A:HIS48 4.5 39.3 1.0
CG A:GLN404 4.6 45.9 1.0
CG A:LEU390 4.6 43.1 1.0
N A:VAL73 4.7 39.0 1.0
O A:VAL73 4.7 39.0 1.0
CD1 A:LEU390 4.9 43.1 1.0
CG A:PHE74 4.9 40.1 1.0
N A:HIS72 5.0 39.0 1.0

Copper binding site 3 out of 9 in 7s4h

Go back to Copper Binding Sites List in 7s4h
Copper binding site 3 out of 9 in the Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu301

b:91.1
occ:1.00
 NE2 C:HIS245 1.5 38.1 1.0
NE2 C:HIS231 2.0 40.8 1.0
OD1 C:ASN227 2.2 39.6 1.0
CE1 C:HIS245 2.5 38.1 1.0
CD2 C:HIS245 2.6 38.1 1.0
CD2 C:HIS231 3.0 40.8 1.0
CE1 C:HIS231 3.0 40.8 1.0
CG C:ASN227 3.3 39.6 1.0
O C:HOH415 3.3 30.0 1.0
ND1 C:HIS245 3.6 38.1 1.0
CG C:HIS245 3.6 38.1 1.0
CD1 C:LEU244 3.7 39.8 1.0
ND2 C:ASN227 3.8 39.6 1.0
O C:HOH406 3.8 30.0 1.0
ND1 C:HIS231 4.1 40.8 1.0
CG C:HIS231 4.1 40.8 1.0
NH2 C:ARG165 4.2 43.4 1.0
CB C:ASN227 4.6 39.6 1.0
NH1 C:ARG165 4.7 43.4 1.0
CZ C:ARG165 4.8 43.4 1.0
CG C:LEU244 4.9 39.8 1.0
CE1 C:PHE248 5.0 37.5 1.0
CE1 C:PHE240 5.0 37.6 1.0

Copper binding site 4 out of 9 in 7s4h

Go back to Copper Binding Sites List in 7s4h
Copper binding site 4 out of 9 in the Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu502

b:55.7
occ:1.00
 ND1 E:HIS33 2.1 49.3 1.0
NE2 E:HIS139 2.1 39.0 1.0
ND1 E:HIS137 2.3 39.0 1.0
N E:HIS33 2.5 49.3 1.0
CD2 E:HIS139 2.8 39.0 1.0
CG E:HIS33 3.0 49.3 1.0
CE1 E:HIS33 3.0 49.3 1.0
CA E:HIS33 3.0 49.3 1.0
CE1 E:HIS139 3.2 39.0 1.0
CG E:HIS137 3.2 39.0 1.0
CB E:HIS33 3.2 49.3 1.0
CE1 E:HIS137 3.3 39.0 1.0
CB E:HIS137 3.4 39.0 1.0
O E:HOH625 3.5 39.9 1.0
O E:HOH638 3.9 42.8 1.0
CD2 E:HIS33 4.1 49.3 1.0
CG E:HIS139 4.1 39.0 1.0
NE2 E:HIS33 4.1 49.3 1.0
O E:HIS137 4.1 39.0 1.0
OE1 E:GLU35 4.1 45.5 1.0
ND1 E:HIS139 4.2 39.0 1.0
CD2 E:HIS137 4.4 39.0 1.0
NE2 E:HIS137 4.4 39.0 1.0
C E:HIS137 4.5 39.0 1.0
C E:HIS33 4.5 49.3 1.0
CA E:HIS137 4.6 39.0 1.0
OE2 E:GLU35 4.6 45.5 1.0
O E:HOH682 4.7 40.8 1.0
CD E:GLU35 4.8 45.5 1.0

Copper binding site 5 out of 9 in 7s4h

Go back to Copper Binding Sites List in 7s4h
Copper binding site 5 out of 9 in the Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu503

b:57.7
occ:1.00
 ND1 E:HIS48 2.0 39.3 1.0
ND1 E:HIS72 2.0 39.0 1.0
OE1 E:GLN404 2.4 45.9 1.0
CE1 E:HIS48 2.8 39.3 1.0
CG E:HIS48 3.0 39.3 1.0
CE1 E:HIS72 3.0 39.0 1.0
CG E:HIS72 3.0 39.0 1.0
CB E:HIS72 3.3 39.0 1.0
O E:HIS72 3.4 39.0 1.0
CB E:HIS48 3.5 39.3 1.0
CD E:GLN404 3.6 45.9 1.0
C E:HIS72 3.9 39.0 1.0
NE2 E:HIS48 3.9 39.3 1.0
CD2 E:LEU390 4.0 43.1 1.0
CD2 E:HIS48 4.0 39.3 1.0
CA E:PHE74 4.1 40.1 1.0
NE2 E:HIS72 4.1 39.0 1.0
CD2 E:HIS72 4.1 39.0 1.0
N E:PHE74 4.2 40.1 1.0
CA E:HIS72 4.2 39.0 1.0
N E:HIS48 4.2 39.3 1.0
CB E:PHE74 4.3 40.1 1.0
NE2 E:GLN404 4.4 45.9 1.0
CD1 E:PHE74 4.4 40.1 1.0
C E:VAL73 4.4 39.0 1.0
CA E:HIS48 4.5 39.3 1.0
CG E:GLN404 4.6 45.9 1.0
CG E:LEU390 4.6 43.1 1.0
N E:VAL73 4.7 39.0 1.0
O E:VAL73 4.7 39.0 1.0
CD1 E:LEU390 4.9 43.1 1.0
CG E:PHE74 4.9 40.1 1.0
N E:HIS72 5.0 39.0 1.0

Copper binding site 6 out of 9 in 7s4h

Go back to Copper Binding Sites List in 7s4h
Copper binding site 6 out of 9 in the Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Cu502

b:55.7
occ:1.00
 ND1 I:HIS33 2.1 49.3 1.0
NE2 I:HIS139 2.1 39.0 1.0
ND1 I:HIS137 2.3 39.0 1.0
N I:HIS33 2.5 49.3 1.0
CD2 I:HIS139 2.8 39.0 1.0
CG I:HIS33 3.0 49.3 1.0
CE1 I:HIS33 3.0 49.3 1.0
CA I:HIS33 3.0 49.3 1.0
CE1 I:HIS139 3.2 39.0 1.0
CG I:HIS137 3.2 39.0 1.0
CB I:HIS33 3.2 49.3 1.0
CE1 I:HIS137 3.3 39.0 1.0
CB I:HIS137 3.4 39.0 1.0
O I:HOH627 3.4 38.4 1.0
O I:HOH640 3.9 43.3 1.0
CD2 I:HIS33 4.1 49.3 1.0
CG I:HIS139 4.1 39.0 1.0
NE2 I:HIS33 4.1 49.3 1.0
O I:HIS137 4.1 39.0 1.0
OE1 I:GLU35 4.1 45.5 1.0
ND1 I:HIS139 4.2 39.0 1.0
CD2 I:HIS137 4.4 39.0 1.0
NE2 I:HIS137 4.4 39.0 1.0
C I:HIS137 4.5 39.0 1.0
C I:HIS33 4.5 49.3 1.0
CA I:HIS137 4.6 39.0 1.0
OE2 I:GLU35 4.6 45.5 1.0
O I:HOH680 4.6 41.7 1.0
CD I:GLU35 4.8 45.5 1.0

Copper binding site 7 out of 9 in 7s4h

Go back to Copper Binding Sites List in 7s4h
Copper binding site 7 out of 9 in the Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Cu503

b:57.7
occ:1.00
 ND1 I:HIS48 2.0 39.3 1.0
ND1 I:HIS72 2.0 39.0 1.0
OE1 I:GLN404 2.4 45.9 1.0
CE1 I:HIS48 2.8 39.3 1.0
CG I:HIS48 3.0 39.3 1.0
CE1 I:HIS72 3.0 39.0 1.0
CG I:HIS72 3.0 39.0 1.0
CB I:HIS72 3.3 39.0 1.0
O I:HIS72 3.4 39.0 1.0
CB I:HIS48 3.5 39.3 1.0
CD I:GLN404 3.6 45.9 1.0
C I:HIS72 3.9 39.0 1.0
NE2 I:HIS48 3.9 39.3 1.0
CD2 I:LEU390 4.0 43.1 1.0
CD2 I:HIS48 4.0 39.3 1.0
CA I:PHE74 4.1 40.1 1.0
NE2 I:HIS72 4.1 39.0 1.0
CD2 I:HIS72 4.1 39.0 1.0
N I:PHE74 4.2 40.1 1.0
CA I:HIS72 4.2 39.0 1.0
N I:HIS48 4.2 39.3 1.0
CB I:PHE74 4.3 40.1 1.0
NE2 I:GLN404 4.4 45.9 1.0
CD1 I:PHE74 4.4 40.1 1.0
C I:VAL73 4.4 39.0 1.0
CA I:HIS48 4.5 39.3 1.0
CG I:GLN404 4.6 45.9 1.0
CG I:LEU390 4.6 43.1 1.0
N I:VAL73 4.7 39.0 1.0
O I:VAL73 4.7 39.0 1.0
CD1 I:LEU390 4.9 43.1 1.0
CG I:PHE74 4.9 40.1 1.0
N I:HIS72 5.0 39.0 1.0

Copper binding site 8 out of 9 in 7s4h

Go back to Copper Binding Sites List in 7s4h
Copper binding site 8 out of 9 in the Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cu302

b:91.1
occ:1.00
 NE2 G:HIS245 1.5 38.1 1.0
NE2 G:HIS231 2.0 40.8 1.0
OD1 G:ASN227 2.2 39.6 1.0
CE1 G:HIS245 2.5 38.1 1.0
CD2 G:HIS245 2.6 38.1 1.0
CD2 G:HIS231 3.0 40.8 1.0
CE1 G:HIS231 3.0 40.8 1.0
CG G:ASN227 3.3 39.6 1.0
O G:HOH413 3.3 30.0 1.0
ND1 G:HIS245 3.6 38.1 1.0
CG G:HIS245 3.6 38.1 1.0
CD1 G:LEU244 3.7 39.8 1.0
ND2 G:ASN227 3.8 39.6 1.0
O G:HOH405 3.8 30.0 1.0
ND1 G:HIS231 4.1 40.8 1.0
CG G:HIS231 4.1 40.8 1.0
NH2 G:ARG165 4.2 43.4 1.0
CB G:ASN227 4.6 39.6 1.0
NH1 G:ARG165 4.7 43.4 1.0
CZ G:ARG165 4.8 43.4 1.0
CG G:LEU244 4.9 39.8 1.0
CE1 G:PHE248 5.0 37.5 1.0
CE1 G:PHE240 5.0 37.6 1.0

Copper binding site 9 out of 9 in 7s4h

Go back to Copper Binding Sites List in 7s4h
Copper binding site 9 out of 9 in the Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 9 of Cryoem Structure of Methylococcus Capsulatus (Bath) Pmmo in A Native Lipid Nanodisc at 2.14 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Cu302

b:91.1
occ:1.00
 NE2 K:HIS245 1.5 38.1 1.0
NE2 K:HIS231 2.0 40.8 1.0
OD1 K:ASN227 2.2 39.6 1.0
CE1 K:HIS245 2.5 38.1 1.0
CD2 K:HIS245 2.6 38.1 1.0
CD2 K:HIS231 3.0 40.8 1.0
CE1 K:HIS231 3.0 40.8 1.0
CG K:ASN227 3.3 39.6 1.0
O K:HOH413 3.3 30.0 1.0
ND1 K:HIS245 3.6 38.1 1.0
CG K:HIS245 3.6 38.1 1.0
CD1 K:LEU244 3.7 39.8 1.0
ND2 K:ASN227 3.8 39.6 1.0
O K:HOH405 3.8 30.0 1.0
ND1 K:HIS231 4.1 40.8 1.0
CG K:HIS231 4.1 40.8 1.0
NH2 K:ARG165 4.2 43.4 1.0
CB K:ASN227 4.6 39.6 1.0
NH1 K:ARG165 4.7 43.4 1.0
CZ K:ARG165 4.8 43.4 1.0
CG K:LEU244 4.9 39.8 1.0
CE1 K:PHE248 5.0 37.5 1.0
CE1 K:PHE240 5.0 37.6 1.0

Reference:

C.W.Koo, F.J.Tucci, Y.He, A.C.Rosenzweig. Recovery of Particulate Methane Monooxygenase Structure and Activity in A Lipid Bilayer. Science V. 375 1287 2022.
ISSN: ESSN 1095-9203
PubMed: 35298269
DOI: 10.1126/SCIENCE.ABM3282
Page generated: Wed Jul 31 09:11:00 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy