Copper in PDB 7rh6: Mycobacterial CIII2CIV2 Supercomplex, Inhibitor Free, -Lpqe Cyt Cc Open

Enzymatic activity of Mycobacterial CIII2CIV2 Supercomplex, Inhibitor Free, -Lpqe Cyt Cc Open

All present enzymatic activity of Mycobacterial CIII2CIV2 Supercomplex, Inhibitor Free, -Lpqe Cyt Cc Open:
1.15.1.1; 7.1.1.8; 7.1.1.9;

Other elements in 7rh6:

The structure of Mycobacterial CIII2CIV2 Supercomplex, Inhibitor Free, -Lpqe Cyt Cc Open also contains other interesting chemical elements:

Iron (Fe) 16 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Mycobacterial CIII2CIV2 Supercomplex, Inhibitor Free, -Lpqe Cyt Cc Open (pdb code 7rh6). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 6 binding sites of Copper where determined in the Mycobacterial CIII2CIV2 Supercomplex, Inhibitor Free, -Lpqe Cyt Cc Open, PDB code: 7rh6:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6;

Copper binding site 1 out of 6 in 7rh6

Go back to Copper Binding Sites List in 7rh6
Copper binding site 1 out of 6 in the Mycobacterial CIII2CIV2 Supercomplex, Inhibitor Free, -Lpqe Cyt Cc Open


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Mycobacterial CIII2CIV2 Supercomplex, Inhibitor Free, -Lpqe Cyt Cc Open within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cu401

b:70.5
occ:1.00
HG Q:CYS273 1.0 55.3 1.0
HE1 Q:HIS281 1.7 54.1 1.0
HD1 Q:HIS281 1.7 54.1 1.0
SG Q:CYS273 1.8 55.3 1.0
SG Q:CYS277 1.8 53.6 1.0
CE1 Q:HIS281 2.0 54.1 1.0
ND1 Q:HIS281 2.0 54.1 1.0
HG Q:CYS277 2.0 53.6 1.0
HB3 Q:CYS273 2.6 55.3 1.0
CB Q:CYS273 2.8 55.3 1.0
HB2 Q:HIS232 3.0 54.8 1.0
NE2 Q:HIS281 3.3 54.1 1.0
HB2 Q:CYS273 3.3 55.3 1.0
CB Q:CYS277 3.4 53.6 1.0
CG Q:HIS281 3.4 54.1 1.0
HB2 Q:CYS277 3.4 53.6 1.0
SD Q:MET284 3.5 55.5 1.0
H Q:GLU275 3.6 53.3 1.0
HB3 Q:MET284 3.7 55.5 1.0
HE3 Q:MET284 3.8 55.5 1.0
CB Q:HIS232 3.8 54.8 1.0
HB3 Q:HIS232 3.8 54.8 1.0
HE2 Q:HIS281 3.9 54.1 1.0
HA Q:HIS281 3.9 54.1 1.0
HB3 Q:CYS277 3.9 53.6 1.0
H Q:GLY233 3.9 54.9 1.0
CD2 Q:HIS281 4.0 54.1 1.0
CA Q:CYS273 4.0 55.3 1.0
C Q:CYS273 4.0 55.3 1.0
CE Q:MET284 4.0 55.5 1.0
HE2 Q:MET284 4.1 55.5 1.0
HB3 Q:GLU275 4.1 53.3 1.0
O Q:HIS281 4.1 54.1 1.0
O Q:CYS273 4.2 55.3 1.0
HD2 Q:HIS232 4.2 54.8 1.0
H Q:CYS277 4.3 53.6 1.0
CG Q:HIS232 4.3 54.8 1.0
HB2 Q:MET284 4.3 55.5 1.0
N Q:CYS277 4.4 53.6 1.0
CB Q:MET284 4.4 55.5 1.0
CB Q:HIS281 4.4 54.1 1.0
O Q:GLU275 4.4 53.3 1.0
HA Q:CYS273 4.4 55.3 1.0
N Q:GLU275 4.4 53.3 1.0
CA Q:CYS277 4.4 53.6 1.0
N Q:THR274 4.4 54.8 1.0
H Q:THR274 4.4 54.8 1.0
CD2 Q:HIS232 4.5 54.8 1.0
CG Q:MET284 4.5 55.5 1.0
HB2 Q:HIS281 4.5 54.1 1.0
CA Q:HIS281 4.5 54.1 1.0
CU Q:CU402 4.6 64.6 1.0
C Q:GLU275 4.6 53.3 1.0
HA Q:CYS277 4.7 53.6 1.0
HE1 R:TYR461 4.7 52.9 1.0
C Q:HIS281 4.8 54.1 1.0
N Q:GLY233 4.8 54.9 1.0
HG2 Q:MET284 4.8 55.5 1.0
C Q:MET276 4.9 51.4 1.0
HD2 Q:HIS281 4.9 54.1 1.0
CA Q:GLU275 4.9 53.3 1.0
CB Q:GLU275 4.9 53.3 1.0
HE1 Q:MET284 5.0 55.5 1.0
CA Q:HIS232 5.0 54.8 1.0

Copper binding site 2 out of 6 in 7rh6

Go back to Copper Binding Sites List in 7rh6
Copper binding site 2 out of 6 in the Mycobacterial CIII2CIV2 Supercomplex, Inhibitor Free, -Lpqe Cyt Cc Open


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Mycobacterial CIII2CIV2 Supercomplex, Inhibitor Free, -Lpqe Cyt Cc Open within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cu402

b:64.6
occ:1.00
HE2 Q:MET284 1.9 55.5 1.0
CE1 Q:HIS232 1.9 54.8 1.0
ND1 Q:HIS232 2.0 54.8 1.0
NE2 Q:HIS232 2.1 54.8 1.0
CG Q:HIS232 2.2 54.8 1.0
CD2 Q:HIS232 2.3 54.8 1.0
HE1 Q:HIS232 2.4 54.8 1.0
HD1 Q:HIS232 2.5 54.8 1.0
CE Q:MET284 2.8 55.5 1.0
HD2 Q:HIS232 3.0 54.8 1.0
HE1 Q:MET284 3.3 55.5 1.0
HB3 Q:HIS232 3.3 54.8 1.0
CB Q:HIS232 3.3 54.8 1.0
O Q:PHE136 3.3 57.7 1.0
HE3 Q:MET284 3.4 55.5 1.0
SD Q:MET284 3.4 55.5 1.0
SG Q:CYS277 3.5 53.6 1.0
H Q:TRP138 3.5 55.6 1.0
HB3 Q:CYS277 3.5 53.6 1.0
HB2 Q:HIS232 3.6 54.8 1.0
HG11 Q:VAL230 3.6 53.8 1.0
HG13 Q:VAL230 3.7 53.8 1.0
HA Q:GLN137 3.9 55.4 1.0
HG Q:CYS273 4.0 55.3 1.0
CB Q:CYS277 4.1 53.6 1.0
CG1 Q:VAL230 4.1 53.8 1.0
O Q:ALA135 4.1 56.4 1.0
C Q:PHE136 4.2 57.7 1.0
HG Q:SER227 4.2 55.6 1.0
HB3 Q:ALA135 4.2 56.4 1.0
HG Q:CYS277 4.3 53.6 1.0
O Q:VAL230 4.3 53.8 1.0
HG12 Q:VAL230 4.3 53.8 1.0
N Q:TRP138 4.4 55.6 1.0
HB2 Q:ALA135 4.5 56.4 1.0
C Q:ALA135 4.6 56.4 1.0
CU Q:CU401 4.6 70.5 1.0
HA Q:CYS277 4.6 53.6 1.0
CA Q:HIS232 4.7 54.8 1.0
O Q:ILE231 4.7 53.7 1.0
HG23 Q:VAL245 4.7 55.6 1.0
CA Q:GLN137 4.7 55.4 1.0
SG Q:CYS273 4.8 55.3 1.0
CB Q:ALA135 4.8 56.4 1.0
HB2 Q:CYS277 4.8 53.6 1.0
HG21 Q:VAL245 4.8 55.6 1.0
H Q:VAL230 4.8 53.8 1.0
N Q:GLN137 4.8 55.4 1.0
HE22 Q:GLN137 4.9 55.4 1.0
N Q:HIS232 4.9 54.8 1.0
HA Q:TRP138 4.9 55.6 1.0
CA Q:CYS277 5.0 53.6 1.0
C Q:ILE231 5.0 53.7 1.0
N Q:PHE136 5.0 57.7 1.0

Copper binding site 3 out of 6 in 7rh6

Go back to Copper Binding Sites List in 7rh6
Copper binding site 3 out of 6 in the Mycobacterial CIII2CIV2 Supercomplex, Inhibitor Free, -Lpqe Cyt Cc Open


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Mycobacterial CIII2CIV2 Supercomplex, Inhibitor Free, -Lpqe Cyt Cc Open within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Cu601

b:93.5
occ:1.00
HE1 R:HIS313 1.5 55.8 1.0
CE1 R:HIS313 1.8 55.8 1.0
NE2 R:HIS314 2.0 54.5 1.0
ND1 R:HIS264 2.0 52.5 1.0
NE2 R:HIS313 2.0 55.8 1.0
HE1 R:HIS264 2.2 52.5 1.0
CE1 R:HIS264 2.3 52.5 1.0
CE1 R:HIS314 2.5 54.5 1.0
HE1 R:HIS314 2.6 54.5 1.0
ND1 R:HIS313 3.0 55.8 1.0
CD2 R:HIS314 3.0 54.5 1.0
CD2 R:HIS313 3.3 55.8 1.0
CG R:HIS264 3.3 52.5 1.0
HD2 R:HIS314 3.5 54.5 1.0
HD1 R:HIS313 3.5 55.8 1.0
NE2 R:HIS264 3.5 52.5 1.0
ND1 R:HIS314 3.6 54.5 1.0
NA R:HEA603 3.7 54.8 1.0
CG R:HIS313 3.7 55.8 1.0
HB2 R:HIS264 3.8 52.5 1.0
CG R:HIS314 3.9 54.5 1.0
C4A R:HEA603 3.9 54.8 1.0
HD2 R:HIS313 4.0 55.8 1.0
C1A R:HEA603 4.0 54.8 1.0
CD2 R:HIS264 4.0 52.5 1.0
FE R:HEA603 4.0 54.8 1.0
CB R:HIS264 4.1 52.5 1.0
HE2 R:HIS264 4.2 52.5 1.0
HA R:HIS264 4.2 52.5 1.0
HE1 R:TYR268 4.3 51.3 1.0
HD1 R:HIS314 4.3 54.5 1.0
HG22 R:VAL267 4.3 51.3 1.0
CHB R:HEA603 4.4 54.8 1.0
NB R:HEA603 4.4 54.8 1.0
HH R:TYR268 4.5 51.3 1.0
C3A R:HEA603 4.5 54.8 1.0
CHA R:HEA603 4.5 54.8 1.0
ND R:HEA603 4.5 54.8 1.0
C2A R:HEA603 4.6 54.8 1.0
C1B R:HEA603 4.6 54.8 1.0
C4D R:HEA603 4.7 54.8 1.0
CA R:HIS264 4.7 52.5 1.0
HG21 R:VAL267 4.8 51.3 1.0
O R:VAL310 4.9 54.2 1.0
HB3 R:HIS264 4.9 52.5 1.0
HD2 R:HIS264 4.9 52.5 1.0
O R:TRP311 4.9 53.0 1.0
H R:HIS314 5.0 54.5 1.0
HHB R:HEA603 5.0 54.8 1.0
HG13 R:VAL310 5.0 54.2 1.0

Copper binding site 4 out of 6 in 7rh6

Go back to Copper Binding Sites List in 7rh6
Copper binding site 4 out of 6 in the Mycobacterial CIII2CIV2 Supercomplex, Inhibitor Free, -Lpqe Cyt Cc Open


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Mycobacterial CIII2CIV2 Supercomplex, Inhibitor Free, -Lpqe Cyt Cc Open within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Cu401

b:75.8
occ:1.00
HG K:CYS273 1.3 57.9 1.0
SG K:CYS273 1.8 57.9 1.0
SG K:CYS277 1.8 57.4 1.0
HE1 K:HIS281 1.9 56.9 1.0
ND1 K:HIS281 2.0 56.9 1.0
CE1 K:HIS281 2.2 56.9 1.0
HB3 K:CYS273 2.8 57.9 1.0
CB K:CYS273 2.9 57.9 1.0
HB2 K:HIS232 3.0 59.1 1.0
CB K:CYS277 3.2 57.4 1.0
HB2 K:CYS277 3.3 57.4 1.0
CG K:HIS281 3.4 56.9 1.0
HB3 K:HIS232 3.4 59.1 1.0
HB2 K:CYS273 3.4 57.9 1.0
NE2 K:HIS281 3.5 56.9 1.0
SD K:MET284 3.5 59.0 1.0
CB K:HIS232 3.6 59.1 1.0
H K:CYS277 3.7 57.4 1.0
HA K:HIS281 3.8 56.9 1.0
H K:GLU275 3.8 56.7 1.0
HE2 K:MET284 3.8 59.0 1.0
N K:CYS277 3.8 57.4 1.0
HB3 K:CYS277 3.9 57.4 1.0
HE1 K:MET284 4.0 59.0 1.0
HB3 K:GLU275 4.0 56.7 1.0
H K:GLY233 4.0 58.7 1.0
CE K:MET284 4.0 59.0 1.0
CD2 K:HIS281 4.0 56.9 1.0
HB2 K:MET284 4.1 59.0 1.0
HE2 K:HIS281 4.1 56.9 1.0
CA K:CYS273 4.1 57.9 1.0
CA K:CYS277 4.1 57.4 1.0
O K:HIS281 4.1 56.9 1.0
CU K:CU402 4.2 68.9 1.0
C K:CYS273 4.2 57.9 1.0
CB K:HIS281 4.3 56.9 1.0
HB2 K:HIS281 4.3 56.9 1.0
CG K:HIS232 4.3 59.1 1.0
HA K:CYS277 4.4 57.4 1.0
O K:GLU275 4.4 56.7 1.0
CA K:HIS281 4.4 56.9 1.0
C K:MET276 4.4 54.9 1.0
HA K:CYS273 4.4 57.9 1.0
O K:CYS273 4.4 57.9 1.0
C K:GLU275 4.5 56.7 1.0
N K:GLU275 4.5 56.7 1.0
HA K:MET276 4.6 54.9 1.0
N K:THR274 4.7 57.3 1.0
H K:THR274 4.7 57.3 1.0
C K:HIS281 4.7 56.9 1.0
CB K:MET284 4.7 59.0 1.0
HB3 K:MET284 4.7 59.0 1.0
CG K:MET284 4.8 59.0 1.0
CB K:GLU275 4.8 56.7 1.0
HD2 K:HIS232 4.8 59.1 1.0
CA K:GLU275 4.8 56.7 1.0
N K:GLY233 4.8 58.7 1.0
CD2 K:HIS232 4.8 59.1 1.0
HA K:HIS232 4.8 59.1 1.0
CA K:HIS232 4.8 59.1 1.0
CA K:MET276 4.9 54.9 1.0
N K:MET276 4.9 54.9 1.0
HE1 L:TYR461 4.9 55.3 1.0
HD2 K:HIS281 5.0 56.9 1.0
HE3 K:MET284 5.0 59.0 1.0
O K:MET276 5.0 54.9 1.0

Copper binding site 5 out of 6 in 7rh6

Go back to Copper Binding Sites List in 7rh6
Copper binding site 5 out of 6 in the Mycobacterial CIII2CIV2 Supercomplex, Inhibitor Free, -Lpqe Cyt Cc Open


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Mycobacterial CIII2CIV2 Supercomplex, Inhibitor Free, -Lpqe Cyt Cc Open within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Cu402

b:68.9
occ:1.00
CD2 K:HIS232 1.4 59.1 1.0
HD2 K:HIS232 1.5 59.1 1.0
NE2 K:HIS232 2.0 59.1 1.0
CG K:HIS232 2.2 59.1 1.0
HE2 K:HIS232 2.3 59.1 1.0
HE1 K:MET284 2.4 59.0 1.0
SG K:CYS277 2.6 57.4 1.0
CE1 K:HIS232 2.8 59.1 1.0
HB3 K:CYS277 2.8 57.4 1.0
ND1 K:HIS232 2.9 59.1 1.0
HB3 K:HIS232 3.1 59.1 1.0
CE K:MET284 3.2 59.0 1.0
CB K:HIS232 3.2 59.1 1.0
CB K:CYS277 3.2 57.4 1.0
HG11 K:VAL230 3.4 58.6 1.0
SD K:MET284 3.4 59.0 1.0
HG13 K:VAL230 3.4 58.6 1.0
HB2 K:HIS232 3.4 59.1 1.0
H K:TRP138 3.5 59.2 1.0
O K:PHE136 3.5 61.4 1.0
HE1 K:HIS232 3.5 59.1 1.0
HA K:CYS277 3.6 57.4 1.0
HG K:CYS273 3.7 57.9 1.0
HE3 K:MET284 3.7 59.0 1.0
CG1 K:VAL230 3.7 58.6 1.0
HE2 K:MET284 3.8 59.0 1.0
HG12 K:VAL230 3.8 58.6 1.0
HA K:GLN137 3.8 59.8 1.0
CA K:CYS277 4.0 57.4 1.0
HB2 K:CYS277 4.0 57.4 1.0
CU K:CU401 4.2 75.8 1.0
O K:ILE231 4.2 57.9 1.0
N K:TRP138 4.3 59.2 1.0
OE1 K:GLN137 4.3 59.8 1.0
C K:PHE136 4.4 61.4 1.0
O K:VAL230 4.5 58.6 1.0
SG K:CYS273 4.6 57.9 1.0
CA K:HIS232 4.6 59.1 1.0
CA K:GLN137 4.7 59.8 1.0
HB2 K:ALA135 4.7 60.1 1.0
C K:ILE231 4.8 57.9 1.0
HA K:TRP138 4.8 59.2 1.0
N K:HIS232 4.8 59.1 1.0
HG K:SER227 4.9 60.1 1.0
O K:ALA135 4.9 60.1 1.0
HD1 K:TRP138 4.9 59.2 1.0
O K:CYS277 4.9 57.4 1.0
N K:GLN137 4.9 59.8 1.0
C K:CYS277 5.0 57.4 1.0
N K:CYS277 5.0 57.4 1.0

Copper binding site 6 out of 6 in 7rh6

Go back to Copper Binding Sites List in 7rh6
Copper binding site 6 out of 6 in the Mycobacterial CIII2CIV2 Supercomplex, Inhibitor Free, -Lpqe Cyt Cc Open


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Mycobacterial CIII2CIV2 Supercomplex, Inhibitor Free, -Lpqe Cyt Cc Open within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cu601

b:86.2
occ:1.00
HE1 L:HIS313 1.7 58.6 1.0
CE1 L:HIS313 1.9 58.6 1.0
NE2 L:HIS314 2.0 57.6 1.0
NE2 L:HIS313 2.0 58.6 1.0
ND1 L:HIS264 2.6 55.6 1.0
CE1 L:HIS314 2.7 57.6 1.0
HE1 L:HIS314 2.8 57.6 1.0
CG L:HIS264 2.9 55.6 1.0
CE1 L:HIS264 3.0 55.6 1.0
CD2 L:HIS314 3.0 57.6 1.0
ND1 L:HIS313 3.1 58.6 1.0
HB2 L:HIS264 3.2 55.6 1.0
CD2 L:HIS313 3.2 58.6 1.0
HE1 L:HIS264 3.3 55.6 1.0
HD2 L:HIS314 3.4 57.6 1.0
NE2 L:HIS264 3.4 55.6 1.0
CD2 L:HIS264 3.4 55.6 1.0
CB L:HIS264 3.6 55.6 1.0
HD1 L:HIS313 3.6 58.6 1.0
CG L:HIS313 3.7 58.6 1.0
ND1 L:HIS314 3.8 57.6 1.0
HD2 L:HIS313 3.9 58.6 1.0
HA L:HIS264 3.9 55.6 1.0
CG L:HIS314 4.0 57.6 1.0
HE2 L:HIS264 4.0 55.6 1.0
HD2 L:HIS264 4.1 55.6 1.0
NA L:HEA603 4.1 57.1 1.0
HG23 L:VAL267 4.3 54.1 1.0
C1A L:HEA603 4.3 57.1 1.0
CA L:HIS264 4.4 55.6 1.0
HB3 L:HIS264 4.4 55.6 1.0
FE L:HEA603 4.4 57.1 1.0
HD1 L:HIS314 4.5 57.6 1.0
HG22 L:VAL267 4.5 54.1 1.0
C4A L:HEA603 4.5 57.1 1.0
CHA L:HEA603 4.7 57.1 1.0
ND L:HEA603 4.7 57.1 1.0
O L:VAL310 4.7 57.6 1.0
O L:TRP311 4.8 56.8 1.0
HA L:TRP311 4.8 56.8 1.0
C4D L:HEA603 4.8 57.1 1.0
CG2 L:VAL267 4.9 54.1 1.0
C2A L:HEA603 4.9 57.1 1.0
HG13 L:VAL310 4.9 57.6 1.0
C3A L:HEA603 5.0 57.1 1.0
NB L:HEA603 5.0 57.1 1.0

Reference:

D.J.Yanofsky, J.M.Di Trani, S.Krol, R.Abdelaziz, S.A.Bueler, P.Imming, P.Brzezinski, J.L.Rubinstein. Structure of Mycobacterial CIII2CIV2 Respiratory Supercomplex Bound to the Tuberculosis Drug Candidate Telacebec (Q203) To Be Published.
Page generated: Sat Aug 21 13:34:06 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy