Copper in PDB 7r5g: Ftra-P19 From Rubrivivax Gelatinosus in Complex with Copper and Magnesium (X2)

The structure of Ftra-P19 From Rubrivivax Gelatinosus in Complex with Copper and Magnesium (X2), PDB code: 7r5g was solved by S.Morera, A.Vigouroux, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.08 / 2.20
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	92.59, 48.36, 78.56, 90, 122.76, 90
R / Rfree (%)	17 / 19.6

The structure of Ftra-P19 From Rubrivivax Gelatinosus in Complex with Copper and Magnesium (X2) also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Copper atom in the Ftra-P19 From Rubrivivax Gelatinosus in Complex with Copper and Magnesium (X2) (pdb code 7r5g). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Ftra-P19 From Rubrivivax Gelatinosus in Complex with Copper and Magnesium (X2), PDB code: 7r5g:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in the Ftra-P19 From Rubrivivax Gelatinosus in Complex with Copper and Magnesium (X2)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Ftra-P19 From Rubrivivax Gelatinosus in Complex with Copper and Magnesium (X2) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu201 b:23.3 occ:1.00 NE2 A:HIS95 2.1 21.3 1.0 NE2 A:HIS41 2.2 18.7 1.0 NE2 B:HIS131 2.2 21.9 1.0 SD A:MET88 2.3 26.2 1.0 CE1 A:HIS95 2.9 21.6 1.0 CE1 B:HIS131 3.0 23.7 1.0 CE1 A:HIS41 3.0 18.5 1.0 CG A:MET88 3.1 21.6 1.0 CD2 A:HIS41 3.2 18.8 1.0 CD2 A:HIS95 3.3 20.6 1.0 CD2 B:HIS131 3.3 21.6 1.0 CE A:MET88 3.6 21.3 1.0 ND1 A:HIS41 4.1 19.9 1.0 ND1 A:HIS95 4.1 22.4 1.0 ND1 B:HIS131 4.2 25.2 1.0 CG A:HIS41 4.2 18.0 1.0 CG A:HIS95 4.3 20.0 1.0 CA A:GLY97 4.3 12.5 1.0 CG B:HIS131 4.4 22.3 1.0 CD1 A:ILE24 4.4 26.5 1.0 CG1 A:ILE24 4.5 24.3 1.0 CB A:MET88 4.5 18.9 1.0 N A:GLY97 4.7 14.3 1.0 C A:GLY97 4.8 16.9 1.0

Copper binding site 2 out of 2 in the Ftra-P19 From Rubrivivax Gelatinosus in Complex with Copper and Magnesium (X2)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Ftra-P19 From Rubrivivax Gelatinosus in Complex with Copper and Magnesium (X2) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu200 b:23.9 occ:1.00 NE2 B:HIS95 2.1 19.9 1.0 NE2 B:HIS41 2.2 20.7 1.0 NE2 A:HIS131 2.2 17.9 1.0 SD B:MET88 2.3 26.5 1.0 CE1 B:HIS95 3.0 20.1 1.0 CE1 B:HIS41 3.0 20.8 1.0 CE1 A:HIS131 3.0 18.7 1.0 CG B:MET88 3.2 23.2 1.0 CD2 B:HIS41 3.2 21.6 1.0 CD2 B:HIS95 3.3 19.3 1.0 CD2 A:HIS131 3.3 17.8 1.0 CE B:MET88 3.6 23.2 1.0 OE2 B:GLU43 3.7 57.5 1.0 ND1 B:HIS95 4.2 21.8 1.0 ND1 B:HIS41 4.2 23.2 1.0 CG B:HIS41 4.2 22.1 1.0 ND1 A:HIS131 4.2 19.6 1.0 CG B:HIS95 4.3 18.6 1.0 CA B:GLY97 4.3 17.9 1.0 CD1 B:ILE24 4.3 27.0 1.0 CG A:HIS131 4.3 18.2 1.0 CG1 B:ILE24 4.4 24.1 1.0 CD B:GLU43 4.5 59.7 1.0 CG B:GLU43 4.5 35.7 1.0 CB B:MET88 4.5 20.5 1.0 N B:GLY97 4.7 18.5 1.0 C B:GLY97 4.8 20.5 1.0

A.S.Steunou, A.Vigouroux, M.Aumont-Nicaise, S.Plancqueel, A.Boussac, S.Ouchane, S.Morera. New Insights Into the Mechanism of Iron Transport Through the Bacterial Ftr System Present in Pathogens. Febs J. V. 289 6286 2022.
ISSN: ISSN 1742-464X
PubMed: 35527501
DOI: 10.1111/FEBS.16476