Atomistry » Copper » PDB 7pyl-7s1d » 7r4z
Atomistry »
  Copper »
    PDB 7pyl-7s1d »
      7r4z »

Copper in PDB 7r4z: Strep-Tag Ftra-P19 From Rubrivivax Gelatinosus in Complex with Iron and Copper

Protein crystallography data

The structure of Strep-Tag Ftra-P19 From Rubrivivax Gelatinosus in Complex with Iron and Copper, PDB code: 7r4z was solved by S.Morera, A.Vigouroux, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.25 / 2.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 60.82, 71.23, 79.65, 90, 90, 90
R / Rfree (%) 17.1 / 22.6

Other elements in 7r4z:

The structure of Strep-Tag Ftra-P19 From Rubrivivax Gelatinosus in Complex with Iron and Copper also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Strep-Tag Ftra-P19 From Rubrivivax Gelatinosus in Complex with Iron and Copper (pdb code 7r4z). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Strep-Tag Ftra-P19 From Rubrivivax Gelatinosus in Complex with Iron and Copper, PDB code: 7r4z:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 7r4z

Go back to Copper Binding Sites List in 7r4z
Copper binding site 1 out of 2 in the Strep-Tag Ftra-P19 From Rubrivivax Gelatinosus in Complex with Iron and Copper


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Strep-Tag Ftra-P19 From Rubrivivax Gelatinosus in Complex with Iron and Copper within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu200

b:72.5
occ:1.00
NE2 A:HIS95 2.2 51.4 1.0
SD A:MET88 2.3 56.0 1.0
NE2 A:HIS41 2.4 40.8 1.0
NE2 B:HIS131 2.4 52.0 1.0
CG A:MET88 3.0 50.5 1.0
CE1 A:HIS41 3.2 40.9 1.0
CD2 A:HIS95 3.2 51.1 1.0
CE1 A:HIS95 3.2 51.4 1.0
CE1 B:HIS131 3.2 52.6 1.0
CD2 A:HIS41 3.4 41.3 1.0
CD2 B:HIS131 3.6 52.7 1.0
CE A:MET88 3.7 52.6 1.0
CA A:GLY97 4.2 41.3 1.0
CB A:MET88 4.3 46.8 1.0
CG A:HIS95 4.3 49.1 1.0
ND1 A:HIS95 4.3 51.5 1.0
ND1 A:HIS41 4.3 42.1 1.0
OE2 A:GLU43 4.4 48.7 1.0
CG A:HIS41 4.4 40.9 1.0
ND1 B:HIS131 4.4 54.5 1.0
N A:GLY97 4.5 41.0 1.0
CD1 A:ILE24 4.5 49.7 1.0
CG B:HIS131 4.6 52.2 1.0
CG A:GLU43 4.7 53.6 1.0
C A:GLY97 4.7 44.9 1.0
CG1 A:ILE24 4.7 49.9 1.0
CD A:GLU43 4.9 72.8 1.0

Copper binding site 2 out of 2 in 7r4z

Go back to Copper Binding Sites List in 7r4z
Copper binding site 2 out of 2 in the Strep-Tag Ftra-P19 From Rubrivivax Gelatinosus in Complex with Iron and Copper


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Strep-Tag Ftra-P19 From Rubrivivax Gelatinosus in Complex with Iron and Copper within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu201

b:60.0
occ:1.00
NE2 B:HIS95 2.0 50.9 1.0
NE2 A:HIS131 2.2 49.4 1.0
SD B:MET88 2.3 48.2 1.0
NE2 B:HIS41 2.3 45.9 1.0
CE1 B:HIS95 2.9 51.0 1.0
CE1 A:HIS131 3.0 50.1 1.0
CD2 B:HIS95 3.1 50.9 1.0
CG B:MET88 3.1 43.3 1.0
CE1 B:HIS41 3.2 45.9 1.0
CD2 B:HIS41 3.3 47.6 1.0
CD2 A:HIS131 3.4 49.7 1.0
CE B:MET88 3.7 44.5 1.0
ND1 B:HIS95 4.1 51.8 1.0
CG B:HIS95 4.1 49.6 1.0
ND1 A:HIS131 4.2 51.2 1.0
CD1 B:ILE24 4.3 57.9 1.0
ND1 B:HIS41 4.3 47.7 1.0
CB B:MET88 4.4 39.2 1.0
CG B:HIS41 4.4 47.0 1.0
CA B:GLY97 4.4 39.1 1.0
CG A:HIS131 4.4 48.8 1.0
OE2 B:GLU43 4.4 68.3 1.0
CG1 B:ILE24 4.5 50.3 1.0
N B:GLY97 4.7 40.6 1.0
CG B:GLU43 4.8 47.9 1.0
C B:GLY97 4.9 43.7 1.0
CD B:GLU43 5.0 73.9 1.0

Reference:

A.S.Steunou, A.Vigouroux, M.Aumont-Nicaise, S.Plancqueel, A.Boussac, S.Ouchane, S.Morera. New Insights Into the Mechanism of Iron Transport Through the Bacterial Ftr System Present in Pathogens. Febs J. V. 289 6286 2022.
ISSN: ISSN 1742-464X
PubMed: 35527501
DOI: 10.1111/FEBS.16476
Page generated: Wed Jul 31 09:01:41 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy