Copper in PDB 7q21: III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum
Enzymatic activity of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum
All present enzymatic activity of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum:
7.1.1.8;
7.1.1.9;
Other elements in 7q21:
The structure of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum also contains other interesting chemical elements:
Copper Binding Sites:
The binding sites of Copper atom in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum
(pdb code 7q21). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 6 binding sites of Copper where determined in the
III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum, PDB code: 7q21:
Jump to Copper binding site number:
1;
2;
3;
4;
5;
6;
Copper binding site 1 out
of 6 in 7q21
Go back to
Copper Binding Sites List in 7q21
Copper binding site 1 out
of 6 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Cu401
b:32.4
occ:1.00
|
ND1
|
G:HIS293
|
2.1
|
24.8
|
1.0
|
SG
|
G:CYS289
|
2.1
|
23.5
|
1.0
|
CU
|
G:CU402
|
2.1
|
50.5
|
1.0
|
SG
|
G:CYS285
|
2.2
|
30.4
|
1.0
|
O
|
G:GLU287
|
2.6
|
30.1
|
1.0
|
CE1
|
G:HIS293
|
2.8
|
24.1
|
1.0
|
CB
|
G:CYS285
|
3.1
|
29.2
|
1.0
|
CG
|
G:HIS293
|
3.3
|
25.4
|
1.0
|
CB
|
G:CYS289
|
3.7
|
25.2
|
1.0
|
C
|
G:GLU287
|
3.7
|
29.5
|
1.0
|
O
|
G:HIS293
|
3.8
|
28.2
|
1.0
|
CB
|
G:HIS293
|
3.8
|
25.9
|
1.0
|
O
|
G:CYS285
|
3.9
|
29.1
|
1.0
|
SD
|
G:MET296
|
3.9
|
31.7
|
1.0
|
N
|
G:CYS289
|
4.0
|
26.2
|
1.0
|
CA
|
G:HIS293
|
4.0
|
27.0
|
1.0
|
ND1
|
G:HIS244
|
4.0
|
28.0
|
1.0
|
NE2
|
G:HIS293
|
4.0
|
24.2
|
1.0
|
C
|
G:CYS285
|
4.1
|
29.1
|
1.0
|
CA
|
G:CYS285
|
4.2
|
29.2
|
1.0
|
N
|
G:GLU287
|
4.2
|
28.9
|
1.0
|
CD2
|
G:HIS293
|
4.3
|
25.0
|
1.0
|
C
|
G:HIS293
|
4.3
|
28.0
|
1.0
|
CA
|
G:CYS289
|
4.4
|
25.6
|
1.0
|
CG
|
G:MET296
|
4.5
|
31.8
|
1.0
|
CA
|
G:GLU287
|
4.5
|
29.2
|
1.0
|
C
|
G:MET288
|
4.6
|
27.0
|
1.0
|
N
|
G:MET288
|
4.7
|
28.9
|
1.0
|
O
|
G:CYS289
|
4.7
|
26.2
|
1.0
|
CE1
|
G:HIS244
|
4.7
|
28.4
|
1.0
|
CA
|
G:MET288
|
4.7
|
28.1
|
1.0
|
CE
|
G:MET296
|
4.8
|
30.4
|
1.0
|
CG
|
G:HIS244
|
4.9
|
28.1
|
1.0
|
N
|
G:ALA286
|
4.9
|
29.2
|
1.0
|
CB
|
G:GLU287
|
5.0
|
30.1
|
1.0
|
|
Copper binding site 2 out
of 6 in 7q21
Go back to
Copper Binding Sites List in 7q21
Copper binding site 2 out
of 6 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Cu402
b:50.5
occ:1.00
|
CU
|
G:CU401
|
2.1
|
32.4
|
1.0
|
SG
|
G:CYS289
|
2.2
|
23.5
|
1.0
|
ND1
|
G:HIS244
|
2.2
|
28.0
|
1.0
|
SG
|
G:CYS285
|
2.2
|
30.4
|
1.0
|
SD
|
G:MET296
|
2.3
|
31.7
|
1.0
|
CE1
|
G:HIS244
|
2.9
|
28.4
|
1.0
|
CE
|
G:MET296
|
3.0
|
30.4
|
1.0
|
CB
|
G:CYS285
|
3.2
|
29.2
|
1.0
|
CG
|
G:HIS244
|
3.4
|
28.1
|
1.0
|
CG
|
G:MET296
|
3.6
|
31.8
|
1.0
|
CB
|
G:CYS289
|
3.6
|
25.2
|
1.0
|
CB
|
G:HIS244
|
3.8
|
28.9
|
1.0
|
ND1
|
G:HIS293
|
4.1
|
24.8
|
1.0
|
O
|
G:GLU287
|
4.1
|
30.1
|
1.0
|
NE2
|
G:HIS244
|
4.1
|
28.0
|
1.0
|
CD2
|
G:HIS244
|
4.3
|
27.6
|
1.0
|
CA
|
G:HIS244
|
4.4
|
28.8
|
1.0
|
CA
|
G:CYS285
|
4.7
|
29.2
|
1.0
|
CD1
|
G:TRP153
|
4.8
|
26.0
|
1.0
|
O
|
G:HIS293
|
4.8
|
28.2
|
1.0
|
O
|
G:CYS289
|
4.8
|
26.2
|
1.0
|
CA
|
G:CYS289
|
4.9
|
25.6
|
1.0
|
CE1
|
G:HIS293
|
4.9
|
24.1
|
1.0
|
CA
|
G:HIS293
|
4.9
|
27.0
|
1.0
|
CB
|
G:MET296
|
4.9
|
31.8
|
1.0
|
|
Copper binding site 3 out
of 6 in 7q21
Go back to
Copper Binding Sites List in 7q21
Copper binding site 3 out
of 6 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cu604
b:35.4
occ:1.00
|
NE2
|
D:HIS315
|
1.9
|
37.3
|
1.0
|
NE2
|
D:HIS314
|
2.0
|
42.7
|
1.0
|
CE1
|
D:HIS314
|
2.2
|
43.2
|
1.0
|
CD2
|
D:HIS315
|
2.5
|
36.7
|
1.0
|
ND1
|
D:HIS265
|
2.5
|
32.5
|
1.0
|
CE1
|
D:HIS315
|
3.0
|
37.1
|
1.0
|
CD2
|
D:HIS314
|
3.2
|
43.4
|
1.0
|
CG
|
D:HIS265
|
3.3
|
31.8
|
1.0
|
CE1
|
D:HIS265
|
3.3
|
32.8
|
1.0
|
ND1
|
D:HIS314
|
3.3
|
42.6
|
1.0
|
CB
|
D:HIS265
|
3.6
|
31.3
|
1.0
|
CG
|
D:HIS315
|
3.7
|
36.1
|
1.0
|
CHA
|
D:HAS602
|
3.8
|
44.1
|
1.0
|
C4D
|
D:HAS602
|
3.8
|
43.6
|
1.0
|
CG
|
D:HIS314
|
3.9
|
42.3
|
1.0
|
ND1
|
D:HIS315
|
3.9
|
35.9
|
1.0
|
ND
|
D:HAS602
|
4.1
|
43.4
|
1.0
|
CD2
|
D:HIS265
|
4.2
|
32.4
|
1.0
|
NE2
|
D:HIS265
|
4.3
|
32.9
|
1.0
|
C3D
|
D:HAS602
|
4.3
|
43.3
|
1.0
|
CA
|
D:HIS265
|
4.5
|
31.6
|
1.0
|
FE
|
D:HAS602
|
4.6
|
43.5
|
1.0
|
C1D
|
D:HAS602
|
4.6
|
43.2
|
1.0
|
C1A
|
D:HAS602
|
4.7
|
43.2
|
1.0
|
C2D
|
D:HAS602
|
4.8
|
43.4
|
1.0
|
O
|
D:VAL311
|
4.9
|
47.6
|
1.0
|
CAD
|
D:HAS602
|
4.9
|
44.1
|
1.0
|
CB
|
D:HIS315
|
5.0
|
36.4
|
1.0
|
|
Copper binding site 4 out
of 6 in 7q21
Go back to
Copper Binding Sites List in 7q21
Copper binding site 4 out
of 6 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 4 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
g:Cu401
b:34.1
occ:1.00
|
ND1
|
g:HIS293
|
2.1
|
33.0
|
1.0
|
SG
|
g:CYS289
|
2.1
|
32.2
|
1.0
|
CU
|
g:CU402
|
2.1
|
52.3
|
1.0
|
SG
|
g:CYS285
|
2.2
|
33.5
|
1.0
|
O
|
g:GLU287
|
2.6
|
36.5
|
1.0
|
CE1
|
g:HIS293
|
2.8
|
32.3
|
1.0
|
CB
|
g:CYS285
|
3.1
|
33.7
|
1.0
|
CG
|
g:HIS293
|
3.3
|
33.5
|
1.0
|
CB
|
g:CYS289
|
3.7
|
33.2
|
1.0
|
C
|
g:GLU287
|
3.7
|
35.6
|
1.0
|
O
|
g:HIS293
|
3.8
|
33.3
|
1.0
|
CB
|
g:HIS293
|
3.8
|
33.3
|
1.0
|
O
|
g:CYS285
|
3.9
|
35.6
|
1.0
|
SD
|
g:MET296
|
3.9
|
33.7
|
1.0
|
N
|
g:CYS289
|
4.0
|
33.4
|
1.0
|
CA
|
g:HIS293
|
4.0
|
33.7
|
1.0
|
ND1
|
g:HIS244
|
4.0
|
33.9
|
1.0
|
NE2
|
g:HIS293
|
4.0
|
32.3
|
1.0
|
C
|
g:CYS285
|
4.1
|
35.4
|
1.0
|
CA
|
g:CYS285
|
4.2
|
34.6
|
1.0
|
N
|
g:GLU287
|
4.3
|
36.0
|
1.0
|
CD2
|
g:HIS293
|
4.3
|
32.8
|
1.0
|
C
|
g:HIS293
|
4.3
|
33.4
|
1.0
|
CA
|
g:CYS289
|
4.4
|
32.8
|
1.0
|
CG
|
g:MET296
|
4.4
|
33.8
|
1.0
|
CA
|
g:GLU287
|
4.5
|
35.7
|
1.0
|
C
|
g:MET288
|
4.6
|
34.9
|
1.0
|
N
|
g:MET288
|
4.7
|
35.5
|
1.0
|
O
|
g:CYS289
|
4.7
|
33.9
|
1.0
|
CE1
|
g:HIS244
|
4.7
|
34.3
|
1.0
|
CA
|
g:MET288
|
4.7
|
35.2
|
1.0
|
CE
|
g:MET296
|
4.8
|
33.3
|
1.0
|
CG
|
g:HIS244
|
4.9
|
34.3
|
1.0
|
N
|
g:ALA286
|
4.9
|
35.2
|
1.0
|
CB
|
g:GLU287
|
5.0
|
37.2
|
1.0
|
|
Copper binding site 5 out
of 6 in 7q21
Go back to
Copper Binding Sites List in 7q21
Copper binding site 5 out
of 6 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 5 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
g:Cu402
b:52.3
occ:1.00
|
CU
|
g:CU401
|
2.1
|
34.1
|
1.0
|
SG
|
g:CYS289
|
2.2
|
32.2
|
1.0
|
ND1
|
g:HIS244
|
2.2
|
33.9
|
1.0
|
SG
|
g:CYS285
|
2.2
|
33.5
|
1.0
|
SD
|
g:MET296
|
2.3
|
33.7
|
1.0
|
CE1
|
g:HIS244
|
2.9
|
34.3
|
1.0
|
CE
|
g:MET296
|
3.0
|
33.3
|
1.0
|
CB
|
g:CYS285
|
3.2
|
33.7
|
1.0
|
CG
|
g:HIS244
|
3.4
|
34.3
|
1.0
|
CG
|
g:MET296
|
3.6
|
33.8
|
1.0
|
CB
|
g:CYS289
|
3.6
|
33.2
|
1.0
|
CB
|
g:HIS244
|
3.8
|
34.8
|
1.0
|
ND1
|
g:HIS293
|
4.1
|
33.0
|
1.0
|
O
|
g:GLU287
|
4.1
|
36.5
|
1.0
|
NE2
|
g:HIS244
|
4.1
|
34.5
|
1.0
|
CD2
|
g:HIS244
|
4.3
|
34.1
|
1.0
|
CA
|
g:HIS244
|
4.4
|
34.8
|
1.0
|
CA
|
g:CYS285
|
4.7
|
34.6
|
1.0
|
CD1
|
g:TRP153
|
4.8
|
30.9
|
1.0
|
O
|
g:HIS293
|
4.8
|
33.3
|
1.0
|
O
|
g:CYS289
|
4.8
|
33.9
|
1.0
|
CA
|
g:CYS289
|
4.9
|
32.8
|
1.0
|
CE1
|
g:HIS293
|
4.9
|
32.3
|
1.0
|
CB
|
g:MET296
|
4.9
|
34.4
|
1.0
|
CA
|
g:HIS293
|
4.9
|
33.7
|
1.0
|
|
Copper binding site 6 out
of 6 in 7q21
Go back to
Copper Binding Sites List in 7q21
Copper binding site 6 out
of 6 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 6 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
d:Cu605
b:46.0
occ:1.00
|
NE2
|
d:HIS315
|
1.9
|
39.8
|
1.0
|
NE2
|
d:HIS314
|
2.0
|
52.7
|
1.0
|
CE1
|
d:HIS314
|
2.2
|
53.3
|
1.0
|
CD2
|
d:HIS315
|
2.5
|
40.6
|
1.0
|
ND1
|
d:HIS265
|
2.7
|
49.6
|
1.0
|
CE1
|
d:HIS315
|
3.0
|
39.8
|
1.0
|
CG
|
d:HIS265
|
3.3
|
47.8
|
1.0
|
CD2
|
d:HIS314
|
3.3
|
52.0
|
1.0
|
ND1
|
d:HIS314
|
3.3
|
51.3
|
1.0
|
CE1
|
d:HIS265
|
3.4
|
50.6
|
1.0
|
CB
|
d:HIS265
|
3.6
|
46.5
|
1.0
|
CG
|
d:HIS315
|
3.7
|
41.8
|
1.0
|
CG
|
d:HIS314
|
3.9
|
50.9
|
1.0
|
ND1
|
d:HIS315
|
3.9
|
40.6
|
1.0
|
CD2
|
d:HIS265
|
4.2
|
48.3
|
1.0
|
NE2
|
d:HIS265
|
4.2
|
49.5
|
1.0
|
C4D
|
d:HAS603
|
4.2
|
49.9
|
1.0
|
CHA
|
d:HAS603
|
4.3
|
49.7
|
1.0
|
ND
|
d:HAS603
|
4.3
|
48.6
|
1.0
|
O
|
d:VAL311
|
4.4
|
56.1
|
1.0
|
CA
|
d:HIS265
|
4.6
|
46.9
|
1.0
|
C3D
|
d:HAS603
|
4.7
|
51.0
|
1.0
|
C1D
|
d:HAS603
|
4.8
|
49.4
|
1.0
|
FE
|
d:HAS603
|
4.8
|
47.5
|
1.0
|
|
Reference:
A.Moe,
T.Kovalova,
S.Krol,
D.J.Yanofsky,
M.Bott,
D.Sjostrand,
J.L.Rubinstein,
M.Hogbom,
P.Brzezinski.
The Respiratory Supercomplex From C. Glutamicum. Structure V. 30 338 2022.
ISSN: ISSN 0969-2126
PubMed: 34910901
DOI: 10.1016/J.STR.2021.11.008
Page generated: Wed Jul 31 09:00:52 2024
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