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Copper in PDB 7q21: III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum

Enzymatic activity of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum

All present enzymatic activity of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum:
7.1.1.8; 7.1.1.9;

Other elements in 7q21:

The structure of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Calcium (Ca) 2 atoms
Iron (Fe) 16 atoms

Copper Binding Sites:

The binding sites of Copper atom in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum (pdb code 7q21). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 6 binding sites of Copper where determined in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum, PDB code: 7q21:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6;

Copper binding site 1 out of 6 in 7q21

Go back to Copper Binding Sites List in 7q21
Copper binding site 1 out of 6 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cu401

b:32.4
occ:1.00
 ND1 G:HIS293 2.1 24.8 1.0
SG G:CYS289 2.1 23.5 1.0
CU G:CU402 2.1 50.5 1.0
SG G:CYS285 2.2 30.4 1.0
O G:GLU287 2.6 30.1 1.0
CE1 G:HIS293 2.8 24.1 1.0
CB G:CYS285 3.1 29.2 1.0
CG G:HIS293 3.3 25.4 1.0
CB G:CYS289 3.7 25.2 1.0
C G:GLU287 3.7 29.5 1.0
O G:HIS293 3.8 28.2 1.0
CB G:HIS293 3.8 25.9 1.0
O G:CYS285 3.9 29.1 1.0
SD G:MET296 3.9 31.7 1.0
N G:CYS289 4.0 26.2 1.0
CA G:HIS293 4.0 27.0 1.0
ND1 G:HIS244 4.0 28.0 1.0
NE2 G:HIS293 4.0 24.2 1.0
C G:CYS285 4.1 29.1 1.0
CA G:CYS285 4.2 29.2 1.0
N G:GLU287 4.2 28.9 1.0
CD2 G:HIS293 4.3 25.0 1.0
C G:HIS293 4.3 28.0 1.0
CA G:CYS289 4.4 25.6 1.0
CG G:MET296 4.5 31.8 1.0
CA G:GLU287 4.5 29.2 1.0
C G:MET288 4.6 27.0 1.0
N G:MET288 4.7 28.9 1.0
O G:CYS289 4.7 26.2 1.0
CE1 G:HIS244 4.7 28.4 1.0
CA G:MET288 4.7 28.1 1.0
CE G:MET296 4.8 30.4 1.0
CG G:HIS244 4.9 28.1 1.0
N G:ALA286 4.9 29.2 1.0
CB G:GLU287 5.0 30.1 1.0

Copper binding site 2 out of 6 in 7q21

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Copper binding site 2 out of 6 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cu402

b:50.5
occ:1.00
 CU G:CU401 2.1 32.4 1.0
SG G:CYS289 2.2 23.5 1.0
ND1 G:HIS244 2.2 28.0 1.0
SG G:CYS285 2.2 30.4 1.0
SD G:MET296 2.3 31.7 1.0
CE1 G:HIS244 2.9 28.4 1.0
CE G:MET296 3.0 30.4 1.0
CB G:CYS285 3.2 29.2 1.0
CG G:HIS244 3.4 28.1 1.0
CG G:MET296 3.6 31.8 1.0
CB G:CYS289 3.6 25.2 1.0
CB G:HIS244 3.8 28.9 1.0
ND1 G:HIS293 4.1 24.8 1.0
O G:GLU287 4.1 30.1 1.0
NE2 G:HIS244 4.1 28.0 1.0
CD2 G:HIS244 4.3 27.6 1.0
CA G:HIS244 4.4 28.8 1.0
CA G:CYS285 4.7 29.2 1.0
CD1 G:TRP153 4.8 26.0 1.0
O G:HIS293 4.8 28.2 1.0
O G:CYS289 4.8 26.2 1.0
CA G:CYS289 4.9 25.6 1.0
CE1 G:HIS293 4.9 24.1 1.0
CA G:HIS293 4.9 27.0 1.0
CB G:MET296 4.9 31.8 1.0

Copper binding site 3 out of 6 in 7q21

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Copper binding site 3 out of 6 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cu604

b:35.4
occ:1.00
 NE2 D:HIS315 1.9 37.3 1.0
NE2 D:HIS314 2.0 42.7 1.0
CE1 D:HIS314 2.2 43.2 1.0
CD2 D:HIS315 2.5 36.7 1.0
ND1 D:HIS265 2.5 32.5 1.0
CE1 D:HIS315 3.0 37.1 1.0
CD2 D:HIS314 3.2 43.4 1.0
CG D:HIS265 3.3 31.8 1.0
CE1 D:HIS265 3.3 32.8 1.0
ND1 D:HIS314 3.3 42.6 1.0
CB D:HIS265 3.6 31.3 1.0
CG D:HIS315 3.7 36.1 1.0
CHA D:HAS602 3.8 44.1 1.0
C4D D:HAS602 3.8 43.6 1.0
CG D:HIS314 3.9 42.3 1.0
ND1 D:HIS315 3.9 35.9 1.0
ND D:HAS602 4.1 43.4 1.0
CD2 D:HIS265 4.2 32.4 1.0
NE2 D:HIS265 4.3 32.9 1.0
C3D D:HAS602 4.3 43.3 1.0
CA D:HIS265 4.5 31.6 1.0
FE D:HAS602 4.6 43.5 1.0
C1D D:HAS602 4.6 43.2 1.0
C1A D:HAS602 4.7 43.2 1.0
C2D D:HAS602 4.8 43.4 1.0
O D:VAL311 4.9 47.6 1.0
CAD D:HAS602 4.9 44.1 1.0
CB D:HIS315 5.0 36.4 1.0

Copper binding site 4 out of 6 in 7q21

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Copper binding site 4 out of 6 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
g:Cu401

b:34.1
occ:1.00
 ND1 g:HIS293 2.1 33.0 1.0
SG g:CYS289 2.1 32.2 1.0
CU g:CU402 2.1 52.3 1.0
SG g:CYS285 2.2 33.5 1.0
O g:GLU287 2.6 36.5 1.0
CE1 g:HIS293 2.8 32.3 1.0
CB g:CYS285 3.1 33.7 1.0
CG g:HIS293 3.3 33.5 1.0
CB g:CYS289 3.7 33.2 1.0
C g:GLU287 3.7 35.6 1.0
O g:HIS293 3.8 33.3 1.0
CB g:HIS293 3.8 33.3 1.0
O g:CYS285 3.9 35.6 1.0
SD g:MET296 3.9 33.7 1.0
N g:CYS289 4.0 33.4 1.0
CA g:HIS293 4.0 33.7 1.0
ND1 g:HIS244 4.0 33.9 1.0
NE2 g:HIS293 4.0 32.3 1.0
C g:CYS285 4.1 35.4 1.0
CA g:CYS285 4.2 34.6 1.0
N g:GLU287 4.3 36.0 1.0
CD2 g:HIS293 4.3 32.8 1.0
C g:HIS293 4.3 33.4 1.0
CA g:CYS289 4.4 32.8 1.0
CG g:MET296 4.4 33.8 1.0
CA g:GLU287 4.5 35.7 1.0
C g:MET288 4.6 34.9 1.0
N g:MET288 4.7 35.5 1.0
O g:CYS289 4.7 33.9 1.0
CE1 g:HIS244 4.7 34.3 1.0
CA g:MET288 4.7 35.2 1.0
CE g:MET296 4.8 33.3 1.0
CG g:HIS244 4.9 34.3 1.0
N g:ALA286 4.9 35.2 1.0
CB g:GLU287 5.0 37.2 1.0

Copper binding site 5 out of 6 in 7q21

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Copper binding site 5 out of 6 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
g:Cu402

b:52.3
occ:1.00
 CU g:CU401 2.1 34.1 1.0
SG g:CYS289 2.2 32.2 1.0
ND1 g:HIS244 2.2 33.9 1.0
SG g:CYS285 2.2 33.5 1.0
SD g:MET296 2.3 33.7 1.0
CE1 g:HIS244 2.9 34.3 1.0
CE g:MET296 3.0 33.3 1.0
CB g:CYS285 3.2 33.7 1.0
CG g:HIS244 3.4 34.3 1.0
CG g:MET296 3.6 33.8 1.0
CB g:CYS289 3.6 33.2 1.0
CB g:HIS244 3.8 34.8 1.0
ND1 g:HIS293 4.1 33.0 1.0
O g:GLU287 4.1 36.5 1.0
NE2 g:HIS244 4.1 34.5 1.0
CD2 g:HIS244 4.3 34.1 1.0
CA g:HIS244 4.4 34.8 1.0
CA g:CYS285 4.7 34.6 1.0
CD1 g:TRP153 4.8 30.9 1.0
O g:HIS293 4.8 33.3 1.0
O g:CYS289 4.8 33.9 1.0
CA g:CYS289 4.9 32.8 1.0
CE1 g:HIS293 4.9 32.3 1.0
CB g:MET296 4.9 34.4 1.0
CA g:HIS293 4.9 33.7 1.0

Copper binding site 6 out of 6 in 7q21

Go back to Copper Binding Sites List in 7q21
Copper binding site 6 out of 6 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
d:Cu605

b:46.0
occ:1.00
 NE2 d:HIS315 1.9 39.8 1.0
NE2 d:HIS314 2.0 52.7 1.0
CE1 d:HIS314 2.2 53.3 1.0
CD2 d:HIS315 2.5 40.6 1.0
ND1 d:HIS265 2.7 49.6 1.0
CE1 d:HIS315 3.0 39.8 1.0
CG d:HIS265 3.3 47.8 1.0
CD2 d:HIS314 3.3 52.0 1.0
ND1 d:HIS314 3.3 51.3 1.0
CE1 d:HIS265 3.4 50.6 1.0
CB d:HIS265 3.6 46.5 1.0
CG d:HIS315 3.7 41.8 1.0
CG d:HIS314 3.9 50.9 1.0
ND1 d:HIS315 3.9 40.6 1.0
CD2 d:HIS265 4.2 48.3 1.0
NE2 d:HIS265 4.2 49.5 1.0
C4D d:HAS603 4.2 49.9 1.0
CHA d:HAS603 4.3 49.7 1.0
ND d:HAS603 4.3 48.6 1.0
O d:VAL311 4.4 56.1 1.0
CA d:HIS265 4.6 46.9 1.0
C3D d:HAS603 4.7 51.0 1.0
C1D d:HAS603 4.8 49.4 1.0
FE d:HAS603 4.8 47.5 1.0

Reference:

A.Moe, T.Kovalova, S.Krol, D.J.Yanofsky, M.Bott, D.Sjostrand, J.L.Rubinstein, M.Hogbom, P.Brzezinski. The Respiratory Supercomplex From C. Glutamicum. Structure V. 30 338 2022.
ISSN: ISSN 0969-2126
PubMed: 34910901
DOI: 10.1016/J.STR.2021.11.008
Page generated: Tue Apr 4 23:25:09 2023

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