Atomistry » Copper » PDB 7o3e-7pyi » 7pxv
Atomistry »
  Copper »
    PDB 7o3e-7pyi »
      7pxv »

Copper in PDB 7pxv: LSAA9_A Chemically Reduced with Ascorbic Acid (High X-Ray Dose)

Enzymatic activity of LSAA9_A Chemically Reduced with Ascorbic Acid (High X-Ray Dose)

All present enzymatic activity of LSAA9_A Chemically Reduced with Ascorbic Acid (High X-Ray Dose):
1.14.99.56;

Protein crystallography data

The structure of LSAA9_A Chemically Reduced with Ascorbic Acid (High X-Ray Dose), PDB code: 7pxv was solved by T.Tandrup, S.J.Muderspach, S.Banerjee, J.Ipsen, K.S.Johansen, L.Lo Leggio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.38 / 1.50
Space group P 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 125.41, 125.41, 125.41, 90, 90, 90
R / Rfree (%) 18.7 / 20.7

Other elements in 7pxv:

The structure of LSAA9_A Chemically Reduced with Ascorbic Acid (High X-Ray Dose) also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Copper Binding Sites:

The binding sites of Copper atom in the LSAA9_A Chemically Reduced with Ascorbic Acid (High X-Ray Dose) (pdb code 7pxv). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the LSAA9_A Chemically Reduced with Ascorbic Acid (High X-Ray Dose), PDB code: 7pxv:

Copper binding site 1 out of 1 in 7pxv

Go back to Copper Binding Sites List in 7pxv
Copper binding site 1 out of 1 in the LSAA9_A Chemically Reduced with Ascorbic Acid (High X-Ray Dose)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of LSAA9_A Chemically Reduced with Ascorbic Acid (High X-Ray Dose) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu301

b:18.1
occ:0.80
ND1 A:HIC1 1.8 18.5 1.0
NE2 A:HIS78 2.0 20.3 1.0
N A:HIC1 2.3 17.4 1.0
CE1 A:HIC1 2.8 21.4 1.0
OH A:TYR164 2.8 16.4 1.0
CG A:HIC1 2.9 18.5 1.0
CD2 A:HIS78 3.0 18.7 1.0
CE1 A:HIS78 3.0 22.2 1.0
CA A:HIC1 3.2 16.1 1.0
CB A:HIC1 3.3 17.1 1.0
O A:HOH625 3.5 32.9 1.0
CZ A:TYR164 3.8 14.8 1.0
OE1 A:GLN162 3.8 18.2 1.0
NE2 A:HIC1 4.0 22.0 1.0
CD2 A:HIC1 4.0 19.1 1.0
O A:HOH574 4.0 22.3 1.0
O A:HOH535 4.1 23.0 1.0
ND1 A:HIS78 4.1 19.8 1.0
CG A:HIS78 4.1 19.8 1.0
CE1 A:TYR164 4.4 13.9 1.0
CE2 A:TYR164 4.6 13.6 1.0
C A:HIC1 4.6 15.7 1.0
CD A:GLN162 4.9 16.6 1.0

Reference:

T.Tandrup, S.J.Muderspach, S.Banerjee, G.Santoni, J.O.Ipsen, C.Hernandez-Rollan, M.H.H.Norholm, K.S.Johansen, F.Meilleur, L.Lo Leggio. Changes in Active-Site Geometry on X-Ray Photoreduction of A Lytic Polysaccharide Monooxygenase Active-Site Copper and Saccharide Binding. Iucrj V. 9 666 2022.
ISSN: ESSN 2052-2525
PubMed: 36071795
DOI: 10.1107/S2052252522007175
Page generated: Wed Jul 31 08:47:43 2024

Last articles

Ca in 2VC2
Ca in 2VCP
Ca in 2VBO
Ca in 2VCC
Ca in 2VCA
Ca in 2VCB
Ca in 2VC9
Ca in 2VBN
Ca in 2VAY
Ca in 2VB6
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy