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Copper in PDB 7pxu: LSAA9_A Chemically Reduced with Ascorbic Acid (Low X-Ray Dose)

Enzymatic activity of LSAA9_A Chemically Reduced with Ascorbic Acid (Low X-Ray Dose)

All present enzymatic activity of LSAA9_A Chemically Reduced with Ascorbic Acid (Low X-Ray Dose):
1.14.99.56;

Protein crystallography data

The structure of LSAA9_A Chemically Reduced with Ascorbic Acid (Low X-Ray Dose), PDB code: 7pxu was solved by T.Tandrup, S.J.Muderspach, S.Banerjee, J.Ipsen, K.S.Johansen, L.Lo Leggio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.24 / 1.80
Space group P 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 125.02, 125.02, 125.02, 90, 90, 90
R / Rfree (%) 19.5 / 22.7

Other elements in 7pxu:

The structure of LSAA9_A Chemically Reduced with Ascorbic Acid (Low X-Ray Dose) also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Copper Binding Sites:

The binding sites of Copper atom in the LSAA9_A Chemically Reduced with Ascorbic Acid (Low X-Ray Dose) (pdb code 7pxu). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the LSAA9_A Chemically Reduced with Ascorbic Acid (Low X-Ray Dose), PDB code: 7pxu:

Copper binding site 1 out of 1 in 7pxu

Go back to Copper Binding Sites List in 7pxu
Copper binding site 1 out of 1 in the LSAA9_A Chemically Reduced with Ascorbic Acid (Low X-Ray Dose)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of LSAA9_A Chemically Reduced with Ascorbic Acid (Low X-Ray Dose) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu301

b:17.0
occ:0.90
ND1 A:HIC1 1.9 16.3 1.0
NE2 A:HIS78 2.0 16.7 1.0
N A:HIC1 2.3 15.3 1.0
CE1 A:HIC1 2.8 16.2 1.0
OH A:TYR164 2.9 13.2 1.0
CG A:HIC1 2.9 15.2 1.0
CD2 A:HIS78 3.0 16.6 1.0
CE1 A:HIS78 3.0 16.3 1.0
CA A:HIC1 3.2 14.2 1.0
O A:HOH662 3.2 38.6 1.0
CB A:HIC1 3.3 14.8 1.0
O A:HOH678 3.7 25.8 1.0
OE1 A:GLN162 3.8 15.1 1.0
CZ A:TYR164 3.8 13.9 1.0
O A:HOH548 3.9 17.0 1.0
O A:HOH618 4.0 11.2 1.0
NE2 A:HIC1 4.0 15.9 1.0
CD2 A:HIC1 4.0 15.7 1.0
ND1 A:HIS78 4.1 16.8 1.0
CG A:HIS78 4.1 17.4 1.0
CE1 A:TYR164 4.5 13.0 1.0
C A:HIC1 4.6 13.7 1.0
CE2 A:TYR164 4.6 13.4 1.0
CD A:GLN162 4.8 14.5 1.0
CE1 A:HIS147 4.9 19.8 1.0
NE2 A:HIS147 5.0 19.7 1.0

Reference:

T.Tandrup, S.J.Muderspach, S.Banerjee, G.Santoni, J.O.Ipsen, C.Hernandez-Rollan, M.H.H.Norholm, K.S.Johansen, F.Meilleur, L.Lo Leggio. Changes in Active-Site Geometry on X-Ray Photoreduction of A Lytic Polysaccharide Monooxygenase Active-Site Copper and Saccharide Binding. Iucrj V. 9 666 2022.
ISSN: ESSN 2052-2525
PubMed: 36071795
DOI: 10.1107/S2052252522007175
Page generated: Wed Jul 31 08:47:43 2024

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