Copper in PDB 7pb7: Structure of Lpmo Domain of Colonization Factor Gbpa From Vibrio Cholerae in the Presence of Calcium

The structure of Structure of Lpmo Domain of Colonization Factor Gbpa From Vibrio Cholerae in the Presence of Calcium, PDB code: 7pb7 was solved by K.Bjerregaard-Andersen, U.Krengel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.58 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	40.61, 45.2, 99.59, 90, 101.06, 90
R / Rfree (%)	17.9 / 22.8

The structure of Structure of Lpmo Domain of Colonization Factor Gbpa From Vibrio Cholerae in the Presence of Calcium also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Copper atom in the Structure of Lpmo Domain of Colonization Factor Gbpa From Vibrio Cholerae in the Presence of Calcium (pdb code 7pb7). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Structure of Lpmo Domain of Colonization Factor Gbpa From Vibrio Cholerae in the Presence of Calcium, PDB code: 7pb7:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in the Structure of Lpmo Domain of Colonization Factor Gbpa From Vibrio Cholerae in the Presence of Calcium


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structure of Lpmo Domain of Colonization Factor Gbpa From Vibrio Cholerae in the Presence of Calcium within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu301 b:13.2 occ:1.00 NE2 A:HIS121 2.0 13.8 1.0 ND1 A:HIS24 2.1 12.7 1.0 N A:HIS24 2.2 10.9 1.0 CD2 A:HIS121 2.8 13.5 1.0 CG A:HIS24 3.0 11.3 1.0 CE1 A:HIS121 3.1 12.6 1.0 CE1 A:HIS24 3.1 15.3 1.0 CA A:HIS24 3.1 9.3 1.0 CB A:HIS24 3.2 13.2 1.0 CZ A:PHE193 3.7 11.6 1.0 CG A:HIS121 4.0 17.0 1.0 CB A:ALA119 4.1 14.8 1.0 O A:HOH563 4.1 18.8 1.0 ND1 A:HIS121 4.1 15.5 1.0 CE1 A:PHE193 4.1 12.9 1.0 CD2 A:HIS24 4.2 17.3 1.0 NE2 A:HIS24 4.2 16.4 1.0 O A:ALA119 4.3 12.1 1.0 C A:HIS24 4.5 11.8 1.0 CE2 A:PHE193 4.6 11.6 1.0 O A:HIS24 4.9 10.0 1.0

Copper binding site 2 out of 2 in the Structure of Lpmo Domain of Colonization Factor Gbpa From Vibrio Cholerae in the Presence of Calcium


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Structure of Lpmo Domain of Colonization Factor Gbpa From Vibrio Cholerae in the Presence of Calcium within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu301 b:13.8 occ:1.00 NE2 B:HIS121 2.0 11.4 1.0 ND1 B:HIS24 2.0 16.4 1.0 N B:HIS24 2.3 10.4 1.0 CD2 B:HIS121 2.9 10.8 1.0 CG B:HIS24 2.9 13.5 1.0 CE1 B:HIS121 3.1 15.9 1.0 CB B:HIS24 3.1 15.7 1.0 CE1 B:HIS24 3.1 17.0 1.0 CA B:HIS24 3.2 12.6 1.0 CZ B:PHE193 3.8 8.4 1.0 CB B:ALA119 3.9 13.7 1.0 CG B:HIS121 4.1 14.6 1.0 CD2 B:HIS24 4.1 15.8 1.0 ND1 B:HIS121 4.1 14.2 1.0 NE2 B:HIS24 4.2 18.1 1.0 O B:HOH589 4.2 18.2 1.0 CE1 B:PHE193 4.3 10.4 1.0 O B:ALA119 4.4 12.7 1.0 C B:HIS24 4.5 7.7 1.0 CE2 B:PHE193 4.7 10.5 1.0 O B:HIS24 4.8 15.1 1.0 O B:HOH418 4.9 18.7 1.0

K.Bjerregaard-Andersen, U.Krengel. Structure of Lpmo Domain of Colonization Factor Gbpa From Vibrio Cholerae in the Presence of Calcium To Be Published.