Copper in PDB 7nim: X-Ray Crystal Structure of LSAA9A - Cinnamon Extract Soak

Protein crystallography data

The structure of X-Ray Crystal Structure of LSAA9A - Cinnamon Extract Soak, PDB code: 7nim was solved by K.E.H.Frandsen, R.Tokin, L.Skov, K.S.Johansen, L.Lo Leggio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.30 / 1.45
Space group P 41 3 2
Cell size a, b, c (Å), α, β, γ (°) 125.179, 125.179, 125.179, 90, 90, 90
R / Rfree (%) 16.7 / 18.7

Other elements in 7nim:

The structure of X-Ray Crystal Structure of LSAA9A - Cinnamon Extract Soak also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Copper Binding Sites:

The binding sites of Copper atom in the X-Ray Crystal Structure of LSAA9A - Cinnamon Extract Soak (pdb code 7nim). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the X-Ray Crystal Structure of LSAA9A - Cinnamon Extract Soak, PDB code: 7nim:

Copper binding site 1 out of 1 in 7nim

Go back to Copper Binding Sites List in 7nim
Copper binding site 1 out of 1 in the X-Ray Crystal Structure of LSAA9A - Cinnamon Extract Soak


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of X-Ray Crystal Structure of LSAA9A - Cinnamon Extract Soak within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu301

b:18.9
occ:1.00
ND1 A:HIC1 1.9 18.1 1.0
NE2 A:HIS78 1.9 19.4 1.0
N A:HIC1 2.2 17.7 1.0
O A:HOH516 2.2 19.9 0.7
OH A:TYR164 2.8 18.1 1.0
CE1 A:HIC1 2.9 18.6 1.0
CE1 A:HIS78 2.9 19.0 1.0
CG A:HIC1 2.9 19.2 1.0
CD2 A:HIS78 3.0 17.5 1.0
O A:HOH672 3.0 23.1 1.0
CA A:HIC1 3.2 17.4 1.0
CB A:HIC1 3.3 16.7 1.0
CZ A:TYR164 3.7 17.4 1.0
OE1 A:GLN162 3.8 20.2 1.0
O A:HOH516 3.9 19.2 0.3
NE2 A:HIC1 4.0 21.1 1.0
ND1 A:HIS78 4.0 19.4 1.0
O A:HOH567 4.0 21.8 1.0
CD2 A:HIC1 4.1 20.1 1.0
CG A:HIS78 4.1 18.9 1.0
CE1 A:TYR164 4.4 16.8 1.0
O A:HOH686 4.5 53.4 1.0
C A:HIC1 4.5 17.5 1.0
CE2 A:TYR164 4.6 15.8 1.0
CD A:GLN162 4.9 19.6 1.0
CE1 A:HIS147 5.0 22.3 1.0
O A:HIC1 5.0 18.0 1.0

Reference:

R.Tokin, K.E.H.Frandsen, J.Ipsen, L.Lo Leggio, M.M.Poojary, J.-G.Berrin, S.Grisel, S.Brander, P.-E.Jensen, K.S.Johansen. X-Ray Crystal Structure of LSAA9A - Cinnamon Extract Soak To Be Published.
Page generated: Sat Aug 21 13:32:03 2021

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