Copper in PDB 7mmu: Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Acetonitrile Soak)

Enzymatic activity of Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Acetonitrile Soak)

All present enzymatic activity of Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Acetonitrile Soak):
1.17.4.1;

Protein crystallography data

The structure of Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Acetonitrile Soak), PDB code: 7mmu was solved by G.M.Palowitch, A.K.Boal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	44.20 / 2.08
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	53.616, 46.766, 134.077, 90, 90.52, 90
*R / R_free (%)*	19.5 / 22.5

Other elements in 7mmu:

The structure of Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Acetonitrile Soak) also contains other interesting chemical elements:

Chlorine

(Cl)

4 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Acetonitrile Soak) (pdb code 7mmu). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Acetonitrile Soak), PDB code: 7mmu:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 7mmu

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Copper Binding Sites List in 7mmu

Copper binding site 1 out of 2 in the Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Acetonitrile Soak)

Mono view

Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Acetonitrile Soak) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cu401 b:27.1 occ:0.94	ND1	A:HIS213	2.2	22.6	1.0
	CL	A:CL402	2.2	23.6	1.0
	CL	A:CL403	2.6	26.0	1.0
	CG	A:HIS213	3.1	22.3	1.0
	CG2	A:VAL116	3.2	19.4	1.0
	CE1	A:HIS213	3.2	22.8	1.0
	CB	A:HIS213	3.3	22.1	1.0
	CB	A:PRO176	3.9	24.7	1.0
	NZ	A:LYS210	4.1	24.6	1.0
	CG	A:PRO176	4.2	25.1	1.0
	CD2	A:HIS213	4.2	22.4	1.0
	NE2	A:HIS213	4.3	22.3	1.0
	CG	A:LYS210	4.4	23.4	1.0
	CG	A:GLN88	4.5	22.1	1.0
	CA	A:LYS210	4.6	23.0	1.0
	CB	A:VAL116	4.6	19.6	1.0
	CD	A:PRO176	4.6	24.9	1.0
	CD	A:LYS210	4.7	24.0	1.0
	NE2	A:GLN88	4.8	22.5	1.0
	OD2	A:ASP93	4.8	22.1	1.0
	CA	A:HIS213	4.8	22.6	1.0
	CG1	A:VAL116	4.8	19.9	1.0
	CB	A:LYS210	4.9	23.1	1.0
	OD1	A:ASP93	4.9	22.4	1.0
	CA	A:PRO176	4.9	24.5	1.0

Copper binding site 2 out of 2 in 7mmu

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Copper Binding Sites List in 7mmu

Copper binding site 2 out of 2 in the Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Acetonitrile Soak)

Mono view

Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of the Class Ie Ribonucleotide Reductase Beta Subunit From Aerococcus Urinae with Cu(I) Bound (Cu Acetonitrile Soak) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Cu401 b:29.3 occ:0.98	ND1	B:HIS213	2.0	22.6	1.0
	CL	B:CL403	2.3	25.9	1.0
	CL	B:CL402	2.5	26.9	1.0
	CG	B:HIS213	3.0	22.6	1.0
	CE1	B:HIS213	3.1	22.7	1.0
	CB	B:HIS213	3.2	22.6	1.0
	CG2	B:VAL116	3.3	19.5	1.0
	CB	B:PRO176	3.7	24.3	1.0
	CD2	B:HIS213	4.1	22.5	1.0
	NZ	B:LYS210	4.1	24.0	1.0
	CG	B:PRO176	4.2	24.3	1.0
	NE2	B:HIS213	4.2	22.5	1.0
	CD	B:LYS210	4.4	23.7	1.0
	CA	B:LYS210	4.5	22.8	1.0
	CD	B:PRO176	4.6	23.8	1.0
	CG	B:GLN88	4.6	21.5	1.0
	CA	B:HIS213	4.7	23.1	1.0
	CB	B:VAL116	4.7	19.4	1.0
	CG	B:LYS210	4.8	23.9	1.0
	CA	B:PRO176	4.8	24.2	1.0
	NE2	B:GLN88	4.8	21.4	1.0
	OD2	B:ASP93	4.9	25.3	1.0
	O	B:HOH510	4.9	25.4	1.0
	CE	B:LYS210	4.9	23.8	1.0
	OD1	B:ASP93	4.9	25.4	1.0
	O	B:LYS210	5.0	21.9	1.0

Reference:

G.M.Palowitch, A.K.Boal. Ribonucleotide Reductase To Be Published.

Page generated: Wed Jul 31 08:38:08 2024

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