Copper in PDB 7mek: Structure of Copper Bound to Ycnl

The structure of Structure of Copper Bound to Ycnl, PDB code: 7mek was solved by M.Damle, O.S.Fisher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.52 / 2.11
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	90.19, 90.19, 209.12, 90, 90, 120
R / Rfree (%)	19.5 / 21.8

The binding sites of Copper atom in the Structure of Copper Bound to Ycnl (pdb code 7mek). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Structure of Copper Bound to Ycnl, PDB code: 7mek:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in the Structure of Copper Bound to Ycnl


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structure of Copper Bound to Ycnl within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu201 b:47.9 occ:1.00 OE2 A:GLU50 2.0 50.6 1.0 ND1 A:HIS27 2.0 35.6 1.0 N A:HIS27 2.1 35.1 1.0 CD A:GLU50 2.8 44.4 1.0 CG A:HIS27 2.9 31.3 1.0 CA A:HIS27 3.0 32.9 1.0 OE1 A:GLU50 3.1 42.1 1.0 CE1 A:HIS27 3.1 36.2 1.0 CB A:HIS27 3.2 30.8 1.0 CH2 A:TRP137 3.4 30.7 1.0 O A:HOH375 3.6 61.7 1.0 CZ3 A:TRP137 4.0 34.1 1.0 CZ2 A:TRP137 4.0 27.0 1.0 CD2 A:HIS27 4.1 37.0 1.0 NE2 A:HIS27 4.1 37.1 1.0 CG A:GLU50 4.2 35.7 1.0 C A:HIS27 4.4 30.0 1.0 O A:HOH369 4.4 52.8 1.0 O A:HOH318 4.5 30.4 1.0 O A:HIS27 4.8 31.8 1.0 CG A:PRO48 5.0 30.1 1.0

Copper binding site 2 out of 2 in the Structure of Copper Bound to Ycnl


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Structure of Copper Bound to Ycnl within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu201 b:61.6 occ:1.00 OE2 B:GLU50 2.0 58.8 1.0 ND1 B:HIS27 2.1 53.5 1.0 N B:HIS27 2.1 37.5 1.0 CD B:GLU50 2.9 53.6 1.0 CG B:HIS27 3.0 47.4 1.0 CA B:HIS27 3.1 38.5 1.0 CE1 B:HIS27 3.1 54.4 1.0 OE1 B:GLU50 3.1 55.1 1.0 CB B:HIS27 3.2 41.1 1.0 CH2 B:TRP137 3.4 42.4 1.0 O B:HOH310 4.0 58.2 1.0 CZ3 B:TRP137 4.0 44.1 1.0 CD2 B:HIS27 4.1 50.4 1.0 CZ2 B:TRP137 4.1 35.9 1.0 NE2 B:HIS27 4.2 51.6 1.0 CG B:GLU50 4.2 46.5 1.0 C B:HIS27 4.4 36.5 1.0 O B:HOH311 4.5 40.0 1.0 O B:HIS27 4.9 39.1 1.0 CG B:PRO48 5.0 36.9 1.0

M.S.Damle, A.N.Singh, S.C.Peters, V.A.Szalai, O.S.Fisher. The Ycni Protein From Bacillus Subtilis Contains A Copper-Binding Domain J.Biol.Chem. 2021.
ISSN: ESSN 1083-351X