Copper in PDB 7jrp: Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata

All present enzymatic activity of Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata:
7.1.1.8;

The structure of Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata also contains other interesting chemical elements:

Zinc	(Zn)	3 atoms
Magnesium	(Mg)	1 atom
Iron	(Fe)	8 atoms

The binding sites of Copper atom in the Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata (pdb code 7jrp). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata, PDB code: 7jrp:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in the Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata within 5.0Å range: probe atom residue distance (Å) B Occ a:Cu603 b:50.7 occ:1.00 NE2 a:HIS293 1.8 29.1 1.0 ND1 a:HIS243 1.8 26.9 1.0 NE2 a:HIS292 2.0 29.8 1.0 CE1 a:HIS292 2.3 29.8 1.0 CE1 a:HIS293 2.6 29.1 1.0 CE1 a:HIS243 2.7 26.9 1.0 CG a:HIS243 2.9 26.9 1.0 CD2 a:HIS293 2.9 29.1 1.0 CD2 a:HIS292 3.3 29.8 1.0 CB a:HIS243 3.4 26.9 1.0 ND1 a:HIS292 3.5 29.8 1.0 ND1 a:HIS293 3.8 29.1 1.0 NE2 a:HIS243 3.9 26.9 1.0 CD2 a:HIS243 3.9 26.9 1.0 CG a:HIS293 4.0 29.1 1.0 CG a:HIS292 4.0 29.8 1.0 CA a:HIS243 4.1 25.4 1.0 CG2 a:VAL246 4.4 25.7 1.0 FE a:HEA601 4.7 50.7 1.0 NA a:HEA601 4.7 50.7 1.0 C4A a:HEA601 4.8 50.7 1.0 CE2 a:TYR247 4.8 26.3 1.0 CHB a:HEA601 4.9 50.7 1.0 ND a:HEA601 4.9 50.7 1.0 N a:HIS243 4.9 25.4 1.0

Copper binding site 2 out of 3 in the Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata within 5.0Å range: probe atom residue distance (Å) B Occ b:Cu301 b:50.7 occ:1.00 CU1 b:CUA301 0.0 50.7 1.0 ND1 b:HIS227 2.1 26.6 1.0 O b:GLU221 2.3 26.3 1.0 SG b:CYS223 2.4 28.8 1.0 SG b:CYS219 2.4 24.4 1.0 CU2 b:CUA301 2.4 50.7 1.0 CE1 b:HIS227 2.8 26.6 1.0 N b:CYS223 3.2 27.4 1.0 CB b:CYS223 3.2 28.8 1.0 CG b:HIS227 3.3 26.6 1.0 CB b:CYS219 3.4 24.4 1.0 C b:GLU221 3.5 26.3 1.0 CE b:MET230 3.6 25.6 1.0 CA b:CYS223 3.8 27.4 1.0 CB b:HIS227 3.9 26.6 1.0 NE2 b:HIS227 3.9 26.6 1.0 C b:ILE222 4.1 27.5 1.0 ND1 b:HIS184 4.2 27.7 1.0 CD2 b:HIS227 4.2 26.6 1.0 CA b:HIS227 4.2 27.9 1.0 N b:GLU221 4.2 26.3 1.0 CA b:ILE222 4.4 27.5 1.0 CA b:GLU221 4.4 26.3 1.0 N b:ILE222 4.4 27.5 1.0 CE1 b:HIS184 4.6 27.7 1.0 CA b:CYS219 4.7 25.7 1.0 C b:CYS219 4.7 25.7 1.0 C b:CYS223 4.8 27.4 1.0 CB b:GLU221 4.8 28.9 1.0 N b:ALA228 4.9 27.8 1.0 SD b:MET230 4.9 25.6 1.0 O b:CYS219 4.9 25.7 1.0

Copper binding site 3 out of 3 in the Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Plant Mitochondrial Complex Sc III2+IV From Vigna Radiata within 5.0Å range: probe atom residue distance (Å) B Occ b:Cu301 b:50.7 occ:1.00 CU2 b:CUA301 0.0 50.7 1.0 CE b:MET230 1.6 25.6 1.0 ND1 b:HIS184 2.2 27.7 1.0 CU1 b:CUA301 2.4 50.7 1.0 SG b:CYS223 2.5 28.8 1.0 SG b:CYS219 2.5 24.4 1.0 CE1 b:HIS184 2.6 27.7 1.0 SD b:MET230 2.6 25.6 1.0 CB b:CYS223 3.2 28.8 1.0 CG b:HIS184 3.5 27.7 1.0 CB b:CYS219 3.6 24.4 1.0 NE2 b:HIS184 3.9 27.7 1.0 CG b:MET230 4.0 25.6 1.0 CB b:MET230 4.2 25.6 1.0 ND1 b:HIS227 4.3 26.6 1.0 CB b:HIS184 4.3 27.7 1.0 CD2 b:HIS184 4.3 27.7 1.0 CA b:CYS223 4.5 27.4 1.0 O b:GLU221 4.5 26.3 1.0 N b:CYS223 4.5 27.4 1.0 CA b:HIS184 4.7 27.9 1.0 O b:LEU183 4.9 28.1 1.0 CE1 b:HIS227 5.0 26.6 1.0

M.Maldonado, F.Guo, J.A.Letts. Atomic Structures of Respiratory Complex III2 , Complex IV and Supercomplex III2-IV From Vascular Plants To Be Published.