Copper in PDB 7f0v: Structure of the M305I Mutant of Cueo

The structure of Structure of the M305I Mutant of Cueo, PDB code: 7f0v was solved by T.K.Kawano, S.T.Takata, N.S.Sakai, R.I.Imaizumi, S.N.Nakata, K.T.Takeshita, S.Y.Yamashita, T.S.Sakurai, K.K.Kataoka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.37 / 1.49
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	49.798, 49.922, 95.933, 86.98, 80.63, 70.54
R / Rfree (%)	18.7 / 23.2

The binding sites of Copper atom in the Structure of the M305I Mutant of Cueo (pdb code 7f0v). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 8 binding sites of Copper where determined in the Structure of the M305I Mutant of Cueo, PDB code: 7f0v:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Copper binding site 1 out of 8 in the Structure of the M305I Mutant of Cueo


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structure of the M305I Mutant of Cueo within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu801 b:47.8 occ:1.00 NE2 A:HIS446 1.9 23.7 1.0 NE2 A:HIS101 2.1 33.1 1.0 CD2 A:HIS446 2.8 25.1 1.0 O A:HOH980 2.8 31.4 1.0 CE1 A:HIS446 2.9 23.7 1.0 CE1 A:HIS101 2.9 35.9 1.0 CD2 A:HIS101 3.0 34.7 1.0 CD2 A:HIS448 3.2 30.2 1.0 NE2 A:HIS448 3.2 27.8 1.0 O1 A:C2O803 3.4 37.9 1.0 CG A:HIS103 3.5 22.4 1.0 CU3 A:C2O803 3.6 39.2 1.0 CA A:HIS103 3.6 24.8 1.0 CD2 A:HIS103 3.6 20.7 1.0 CB A:HIS103 3.8 22.6 1.0 CG A:HIS448 3.9 28.3 1.0 CG A:HIS446 3.9 24.6 1.0 CE1 A:HIS448 4.0 29.8 1.0 ND1 A:HIS446 4.0 24.0 1.0 CU2 A:C2O803 4.0 29.9 1.0 ND1 A:HIS101 4.1 36.7 1.0 ND1 A:HIS103 4.1 27.0 1.0 CG A:HIS101 4.1 31.0 1.0 NE2 A:HIS103 4.2 25.1 1.0 ND1 A:HIS448 4.3 27.1 1.0 N A:GLY104 4.3 24.9 1.0 CE1 A:HIS103 4.4 19.1 1.0 C A:HIS103 4.5 22.9 1.0 N A:HIS103 4.5 25.3 1.0 CA A:HIS448 4.6 25.5 1.0 CB A:HIS448 4.7 27.9 1.0 O A:HOH1041 4.8 34.6 1.0 O A:TRP102 4.8 27.4 1.0 O A:HOH942 4.9 26.7 1.0 NE2 A:HIS499 4.9 26.4 1.0 N A:HIS448 5.0 25.8 1.0

Copper binding site 2 out of 8 in the Structure of the M305I Mutant of Cueo


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Structure of the M305I Mutant of Cueo within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu802 b:27.6 occ:1.00 ND1 A:HIS443 2.0 26.7 1.0 ND1 A:HIS505 2.1 26.3 1.0 SG A:CYS500 2.2 26.0 1.0 CE1 A:HIS443 2.9 30.5 1.0 CE1 A:HIS505 3.0 27.4 1.0 CG A:HIS443 3.1 29.2 1.0 CG A:HIS505 3.1 26.9 1.0 CB A:CYS500 3.2 27.4 1.0 SD A:MET510 3.3 29.2 1.0 CB A:HIS505 3.4 25.0 1.0 CB A:HIS443 3.5 28.5 1.0 O A:LEU442 3.6 26.3 1.0 CA A:HIS443 3.7 25.7 1.0 CB A:LEU502 4.0 25.9 1.0 NE2 A:HIS443 4.1 28.2 1.0 NE2 A:HIS505 4.1 26.5 1.0 CD2 A:HIS443 4.2 29.0 1.0 CE A:MET510 4.2 31.8 1.0 CD2 A:HIS505 4.2 25.1 1.0 C A:LEU442 4.4 29.2 1.0 N A:HIS443 4.5 25.4 1.0 CA A:CYS500 4.6 25.7 1.0 CD1 A:LEU502 4.6 27.6 1.0 CG A:MET510 4.8 26.8 1.0 CG A:LEU502 4.8 26.2 1.0 O A:LEU502 4.9 25.6 1.0 C A:HIS443 4.9 25.4 1.0 CA A:HIS505 4.9 26.8 1.0 CD A:PRO444 5.0 24.3 1.0

Copper binding site 3 out of 8 in the Structure of the M305I Mutant of Cueo


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Structure of the M305I Mutant of Cueo within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu803 b:29.9 occ:1.00 CU2 A:C2O803 0.0 29.9 1.0 CD2 A:HIS103 2.0 20.7 1.0 NE2 A:HIS141 2.1 25.4 1.0 NE2 A:HIS501 2.1 23.2 1.0 O1 A:C2O803 2.2 37.9 1.0 NE2 A:HIS103 2.9 25.1 1.0 CE1 A:HIS141 3.0 29.1 1.0 CD2 A:HIS141 3.0 24.6 1.0 CG A:HIS103 3.0 22.4 1.0 CD2 A:HIS501 3.0 28.5 1.0 CE1 A:HIS501 3.1 26.2 1.0 CB A:HIS103 3.6 22.6 1.0 CZ2 A:TRP139 3.7 24.1 1.0 CU A:CU801 4.0 47.8 1.0 CE1 A:HIS103 4.1 19.1 1.0 ND1 A:HIS141 4.1 27.1 1.0 CE2 A:TRP139 4.1 25.1 1.0 ND1 A:HIS103 4.1 27.0 1.0 CG A:HIS141 4.1 26.1 1.0 CD2 A:HIS101 4.1 34.7 1.0 CG A:HIS501 4.2 24.2 1.0 ND1 A:HIS501 4.2 24.7 1.0 NE1 A:TRP139 4.2 23.6 1.0 CD2 A:HIS446 4.3 25.1 1.0 CU3 A:C2O803 4.4 39.2 1.0 NE2 A:HIS446 4.4 23.7 1.0 CH2 A:TRP139 4.5 27.1 1.0 NE2 A:HIS101 4.5 33.1 1.0 CA A:HIS103 4.8 24.8 1.0

Copper binding site 4 out of 8 in the Structure of the M305I Mutant of Cueo


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Structure of the M305I Mutant of Cueo within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu803 b:39.2 occ:1.00 CU3 A:C2O803 0.0 39.2 1.0 NE2 A:HIS143 2.1 39.7 1.0 NE2 A:HIS448 2.1 27.8 1.0 NE2 A:HIS499 2.1 26.4 1.0 O1 A:C2O803 2.2 37.9 1.0 CD2 A:HIS143 2.9 38.3 1.0 CE1 A:HIS448 3.0 29.8 1.0 CD2 A:HIS499 3.0 29.8 1.0 CE1 A:HIS499 3.1 32.8 1.0 CE1 A:HIS143 3.2 38.7 1.0 CD2 A:HIS448 3.2 30.2 1.0 CU A:CU801 3.6 47.8 1.0 CD2 A:HIS446 3.6 25.1 1.0 NE2 A:HIS101 4.0 33.1 1.0 CD2 A:HIS101 4.0 34.7 1.0 CG A:HIS143 4.1 36.6 1.0 ND1 A:HIS448 4.1 27.1 1.0 NE2 A:HIS446 4.1 23.7 1.0 CG A:HIS499 4.1 27.1 1.0 ND1 A:HIS499 4.1 30.9 1.0 ND1 A:HIS143 4.2 37.5 1.0 CG A:HIS448 4.2 28.3 1.0 CU2 A:C2O803 4.4 29.9 1.0 CE1 A:HIS101 4.6 35.9 1.0 CG A:HIS101 4.7 31.0 1.0 CB A:MET497 4.7 31.1 1.0 CE1 A:HIS141 4.7 29.1 1.0 CD2 A:HIS501 4.8 28.5 1.0 CG A:HIS446 4.8 24.6 1.0 OE1 A:GLU506 4.9 49.0 1.0 NE2 A:HIS501 4.9 23.2 1.0 NE2 A:HIS141 5.0 25.4 1.0

Copper binding site 5 out of 8 in the Structure of the M305I Mutant of Cueo


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Structure of the M305I Mutant of Cueo within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu801 b:53.9 occ:1.00 NE2 B:HIS446 2.0 28.7 1.0 NE2 B:HIS101 2.0 40.3 1.0 O1 B:C2O803 2.8 45.7 1.0 O B:HOH1051 2.8 33.0 1.0 CD2 B:HIS446 2.8 28.4 1.0 CE1 B:HIS101 2.8 36.5 1.0 CD2 B:HIS101 3.1 39.2 1.0 CE1 B:HIS446 3.1 28.6 1.0 NE2 B:HIS448 3.2 33.2 1.0 CD2 B:HIS448 3.2 35.7 1.0 CU3 B:C2O803 3.5 46.1 1.0 CG B:HIS103 3.6 24.9 1.0 CA B:HIS103 3.6 26.7 1.0 CD2 B:HIS103 3.6 21.2 1.0 CB B:HIS103 3.8 26.5 1.0 CE1 B:HIS448 3.8 36.7 1.0 CG B:HIS448 3.9 33.3 1.0 CU2 B:C2O803 4.0 35.4 1.0 ND1 B:HIS101 4.0 36.9 1.0 CG B:HIS446 4.0 31.3 1.0 ND1 B:HIS446 4.1 26.0 1.0 ND1 B:HIS103 4.1 26.4 1.0 CG B:HIS101 4.1 38.4 1.0 NE2 B:HIS103 4.1 28.8 1.0 ND1 B:HIS448 4.2 37.0 1.0 N B:GLY104 4.4 27.3 1.0 CE1 B:HIS103 4.4 21.2 1.0 C B:HIS103 4.5 25.1 1.0 N B:HIS103 4.6 30.1 1.0 CA B:HIS448 4.7 27.6 1.0 O B:HOH988 4.7 32.0 1.0 CB B:HIS448 4.8 31.3 1.0 CE1 B:HIS499 4.8 34.7 1.0 O B:TRP102 4.8 30.2 1.0 O B:HOH928 5.0 31.3 1.0

Copper binding site 6 out of 8 in the Structure of the M305I Mutant of Cueo


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Structure of the M305I Mutant of Cueo within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu802 b:40.9 occ:1.00 ND1 B:HIS443 2.0 38.8 1.0 ND1 B:HIS505 2.1 35.6 1.0 SG B:CYS500 2.2 36.4 1.0 CG B:HIS443 3.0 41.3 1.0 CE1 B:HIS443 3.0 39.6 1.0 CG B:HIS505 3.0 36.5 1.0 CE1 B:HIS505 3.1 40.3 1.0 CB B:CYS500 3.2 36.4 1.0 CB B:HIS505 3.3 34.9 1.0 SD B:MET510 3.3 42.2 1.0 CB B:HIS443 3.3 36.8 1.0 CA B:HIS443 3.6 36.0 1.0 O B:LEU442 3.7 40.0 1.0 CB B:LEU502 4.0 35.0 1.0 CE B:MET510 4.1 46.9 1.0 NE2 B:HIS443 4.1 44.6 1.0 CD2 B:HIS443 4.1 41.6 1.0 CD2 B:HIS505 4.2 37.1 1.0 NE2 B:HIS505 4.2 37.4 1.0 C B:LEU442 4.4 35.4 1.0 N B:HIS443 4.4 35.7 1.0 CD1 B:LEU502 4.5 34.6 1.0 CA B:CYS500 4.6 33.0 1.0 CE B:MET355 4.6 73.7 1.0 CG B:LEU502 4.7 36.0 1.0 CG B:MET510 4.8 37.9 1.0 CA B:HIS505 4.8 39.9 1.0 C B:HIS443 4.9 33.0 1.0 O B:LEU502 4.9 37.6 1.0

Copper binding site 7 out of 8 in the Structure of the M305I Mutant of Cueo


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Structure of the M305I Mutant of Cueo within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu803 b:35.4 occ:1.00 CU2 B:C2O803 0.0 35.4 1.0 CD2 B:HIS103 2.0 21.2 1.0 NE2 B:HIS141 2.0 30.6 1.0 NE2 B:HIS501 2.1 31.5 1.0 O1 B:C2O803 2.2 45.7 1.0 CE1 B:HIS141 2.9 35.0 1.0 NE2 B:HIS103 3.0 28.8 1.0 CG B:HIS103 3.0 24.9 1.0 CD2 B:HIS501 3.0 27.1 1.0 CE1 B:HIS501 3.1 30.2 1.0 CD2 B:HIS141 3.1 31.8 1.0 CB B:HIS103 3.5 26.5 1.0 CZ2 B:TRP139 3.8 29.6 1.0 CU B:CU801 4.0 53.9 1.0 ND1 B:HIS141 4.1 30.3 1.0 CE1 B:HIS103 4.1 21.2 1.0 CE2 B:TRP139 4.1 27.4 1.0 ND1 B:HIS103 4.2 26.4 1.0 CD2 B:HIS101 4.2 39.2 1.0 ND1 B:HIS501 4.2 29.3 1.0 CG B:HIS141 4.2 30.2 1.0 CG B:HIS501 4.2 30.6 1.0 NE1 B:TRP139 4.2 28.9 1.0 CU3 B:C2O803 4.4 46.1 1.0 CD2 B:HIS446 4.4 28.4 1.0 NE2 B:HIS101 4.4 40.3 1.0 NE2 B:HIS446 4.5 28.7 1.0 CH2 B:TRP139 4.5 28.2 1.0 CA B:HIS103 4.7 26.7 1.0

Copper binding site 8 out of 8 in the Structure of the M305I Mutant of Cueo


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Structure of the M305I Mutant of Cueo within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu803 b:46.1 occ:1.00 CU3 B:C2O803 0.0 46.1 1.0 CE1 B:HIS499 2.1 34.7 1.0 NE2 B:HIS143 2.1 36.5 1.0 NE2 B:HIS448 2.1 33.2 1.0 O1 B:C2O803 2.2 45.7 1.0 NE2 B:HIS499 2.9 35.3 1.0 CE1 B:HIS448 3.0 36.7 1.0 CD2 B:HIS143 3.0 42.1 1.0 CE1 B:HIS143 3.2 42.9 1.0 ND1 B:HIS499 3.2 38.9 1.0 CD2 B:HIS448 3.2 35.7 1.0 CU B:CU801 3.5 53.9 1.0 NE2 B:HIS101 3.7 40.3 1.0 CD2 B:HIS446 3.7 28.4 1.0 CD2 B:HIS101 3.8 39.2 1.0 CD2 B:HIS499 4.1 31.4 1.0 ND1 B:HIS448 4.1 37.0 1.0 CG B:HIS143 4.2 40.4 1.0 NE2 B:HIS446 4.2 28.7 1.0 ND1 B:HIS143 4.2 45.0 1.0 CG B:HIS499 4.2 34.3 1.0 CG B:HIS448 4.3 33.3 1.0 CU2 B:C2O803 4.4 35.4 1.0 CE1 B:HIS101 4.5 36.5 1.0 CG B:HIS101 4.6 38.4 1.0 CE1 B:HIS141 4.7 35.0 1.0 CB B:MET497 4.8 36.0 1.0 CD2 B:HIS501 4.8 27.1 1.0 NE2 B:HIS501 4.9 31.5 1.0 CG B:HIS446 5.0 31.3 1.0 ND1 B:HIS101 5.0 36.9 1.0 OE1 B:GLU506 5.0 64.2 1.0

T.K.Kawano, S.T.Takata, N.S.Sakai, R.I.Imaizumi, S.N.Nakata, K.T.Takeshita, S.Y.Yamashita, T.S.Sakurai, K.K.Kataoka. Structure of the M305I Mutant of Cueo To Be Published.