Copper in PDB 7eay: Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs

The structure of Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs, PDB code: 7eay was solved by J.Kondo, A.Terashima, A.Yoshimura, Y.Tada, A.Ono, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.27 / 2.50
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	89.923, 155.333, 80.627, 90, 90, 90
R / Rfree (%)	21.4 / 25.3

The structure of Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs also contains other interesting chemical elements:

Potassium	(K)	4 atoms
Cobalt	(Co)	18 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Copper atom in the Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs (pdb code 7eay). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 12 binding sites of Copper where determined in the Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs, PDB code: 7eay:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Copper binding site 1 out of 12 in the Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu101 b:35.2 occ:1.00 N4 A:J0X7 2.0 28.8 1.0 N4 B:J0X6 2.0 32.2 1.0 O9 A:J0X7 2.1 36.8 1.0 O8 B:J0X6 2.1 35.5 1.0 C7 A:J0X7 2.8 35.5 1.0 C8 A:J0X7 2.9 31.7 1.0 C7 B:J0X6 2.9 35.0 1.0 N2 C:DG8 3.0 31.8 1.0 C4 B:J0X6 3.0 37.8 1.0 C8 B:J0X6 3.0 33.9 1.0 C4 A:J0X7 3.1 35.8 1.0 N3 B:J0X6 3.2 38.6 1.0 N3 A:J0X6 3.4 30.8 1.0 C2 C:DG8 3.4 35.3 1.0 N3 A:J0X7 3.5 34.9 1.0 O8 B:J0X7 3.5 30.4 1.0 C2 A:J0X6 3.8 34.5 1.0 C4 A:J0X6 3.9 30.1 1.0 O2 A:J0X6 3.9 29.3 1.0 N1 C:DG8 4.0 35.4 1.0 N3 C:DG8 4.0 33.7 1.0 O8 A:J0X7 4.0 40.4 1.0 O9 B:J0X6 4.1 43.5 1.0 CU A:CU102 4.2 34.7 1.0 N4 A:J0X6 4.2 29.8 1.0 O2 B:DC5 4.3 42.5 1.0 C5 B:J0X6 4.3 40.8 1.0 C7 B:J0X7 4.3 34.4 1.0 C5 A:J0X7 4.3 35.8 1.0 C2 B:J0X6 4.5 41.9 1.0 O C:HOH210 4.5 44.9 1.0 N1 A:J0X6 4.6 33.3 1.0 N3 B:DC5 4.6 37.5 1.0 C2 B:DC5 4.7 39.3 1.0 C5 A:J0X6 4.7 32.4 1.0 C2 A:J0X7 4.8 36.3 1.0 O9 B:J0X7 4.9 36.3 1.0 O A:HOH201 4.9 33.6 1.0 C4 C:DG8 4.9 36.4 1.0 N4 B:J0X7 4.9 35.8 1.0 C6 A:J0X6 5.0 33.9 1.0

Copper binding site 2 out of 12 in the Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu102 b:34.7 occ:1.00 N4 B:J0X7 2.0 35.8 1.0 N4 A:J0X6 2.0 29.8 1.0 O9 A:J0X6 2.1 30.5 1.0 O8 B:J0X7 2.1 30.4 1.0 C7 A:J0X6 2.9 34.9 1.0 C7 B:J0X7 2.9 34.4 1.0 O9 A:J0X7 2.9 36.8 1.0 C8 A:J0X6 3.0 31.8 1.0 C8 B:J0X7 3.0 33.5 1.0 C4 B:J0X7 3.0 38.3 1.0 C4 A:J0X6 3.1 30.1 1.0 N3 B:J0X7 3.3 37.4 1.0 N3 A:J0X6 3.3 30.8 1.0 N1 B:DG8 3.4 35.2 1.0 C7 A:J0X7 3.5 35.5 1.0 O8 A:J0X7 3.7 40.4 1.0 C6 B:DG8 3.7 36.6 1.0 O6 B:DG8 3.7 34.9 1.0 N3 A:DC5 3.9 29.2 1.0 O B:HOH102 3.9 48.4 1.0 N4 A:DC5 4.0 29.9 1.0 O8 A:J0X6 4.1 42.0 1.0 N3 B:J0X6 4.1 38.6 1.0 C2 B:DG8 4.1 33.0 1.0 O9 B:J0X7 4.1 36.3 1.0 CU A:CU101 4.2 35.2 1.0 C4 A:DC5 4.3 28.8 1.0 C5 A:J0X6 4.3 32.4 1.0 C5 B:J0X7 4.3 41.0 1.0 N2 B:DG8 4.5 35.2 1.0 C2 B:J0X7 4.5 41.8 1.0 C5 B:DG8 4.5 37.7 1.0 N4 B:J0X6 4.6 32.2 1.0 C2 A:J0X6 4.6 34.5 1.0 C4 B:J0X6 4.6 37.8 1.0 C8 A:J0X7 4.6 31.7 1.0 C2 B:J0X6 4.7 41.9 1.0 C2 A:DC5 4.7 29.9 1.0 O2 B:J0X6 4.8 41.0 1.0 N4 A:J0X7 4.8 28.8 1.0 N3 B:DG8 4.9 34.4 1.0 O2 A:DC5 4.9 28.9 1.0 C4 B:DG8 5.0 37.0 1.0

Copper binding site 3 out of 12 in the Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu101 b:36.4 occ:1.00 N4 C:J0X7 1.9 31.6 1.0 N4 D:J0X6 1.9 32.8 1.0 O9 D:J0X6 2.2 36.0 1.0 O8 C:J0X7 2.2 32.8 1.0 C8 C:J0X7 2.8 32.4 1.0 C7 C:J0X7 2.8 35.0 1.0 N2 A:DG8 2.9 34.8 1.0 C7 D:J0X6 2.9 37.7 1.0 C4 D:J0X6 3.0 39.6 1.0 C8 D:J0X6 3.0 35.5 1.0 C4 C:J0X7 3.1 36.9 1.0 N3 D:J0X6 3.2 37.7 1.0 N3 C:J0X6 3.4 29.5 1.0 C2 A:DG8 3.4 34.9 1.0 N3 C:J0X7 3.4 35.3 1.0 O9 D:J0X7 3.5 29.6 1.0 C2 C:J0X6 3.7 34.8 1.0 C4 C:J0X6 3.9 28.8 1.0 O2 C:J0X6 3.9 34.2 1.0 N3 A:DG8 4.0 36.7 1.0 N1 A:DG8 4.0 36.0 1.0 O9 C:J0X7 4.1 42.4 1.0 O8 D:J0X6 4.1 43.4 1.0 CU C:CU102 4.2 38.0 1.0 C5 D:J0X6 4.2 41.5 1.0 N4 C:J0X6 4.2 32.4 1.0 C5 C:J0X7 4.3 36.1 1.0 C7 D:J0X7 4.3 35.5 1.0 O2 D:DC5 4.3 43.5 1.0 C2 D:J0X6 4.5 45.9 1.0 N1 C:J0X6 4.5 31.9 1.0 N3 D:DC5 4.6 41.8 1.0 C2 D:DC5 4.7 40.8 1.0 C5 C:J0X6 4.7 29.6 1.0 C2 C:J0X7 4.7 35.7 1.0 O8 D:J0X7 4.8 37.4 1.0 O C:HOH202 4.9 35.1 1.0 C4 A:DG8 4.9 40.4 1.0 N4 D:J0X7 4.9 36.6 1.0 C6 C:J0X6 5.0 31.8 1.0

Copper binding site 4 out of 12 in the Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu102 b:38.0 occ:1.00 N4 D:J0X7 2.0 36.6 1.0 O8 C:J0X6 2.0 31.5 1.0 N4 C:J0X6 2.0 32.4 1.0 O9 D:J0X7 2.0 29.6 1.0 C7 D:J0X7 2.9 35.5 1.0 O8 C:J0X7 2.9 32.8 1.0 C7 C:J0X6 2.9 33.3 1.0 C8 D:J0X7 3.0 33.5 1.0 C8 C:J0X6 3.1 36.0 1.0 C4 D:J0X7 3.1 39.5 1.0 C4 C:J0X6 3.1 28.8 1.0 N3 D:J0X7 3.3 37.4 1.0 N3 C:J0X6 3.3 29.5 1.0 N1 D:DG8 3.4 36.5 1.0 C7 C:J0X7 3.6 35.0 1.0 C6 D:DG8 3.7 37.6 1.0 O6 D:DG8 3.7 36.6 1.0 O9 C:J0X7 3.8 42.4 1.0 N3 C:DC5 3.9 30.2 1.0 N4 C:DC5 4.0 33.7 1.0 O8 D:J0X7 4.1 37.4 1.0 O9 C:J0X6 4.1 38.9 1.0 N3 D:J0X6 4.1 37.7 1.0 C2 D:DG8 4.1 36.4 1.0 CU C:CU101 4.2 36.4 1.0 C4 C:DC5 4.2 32.5 1.0 C5 C:J0X6 4.3 29.6 1.0 C5 D:J0X7 4.4 45.4 1.0 C4 D:J0X6 4.4 39.6 1.0 N4 D:J0X6 4.5 32.8 1.0 N2 D:DG8 4.5 37.1 1.0 C5 D:DG8 4.5 38.3 1.0 C2 D:J0X7 4.5 45.8 1.0 C2 C:J0X6 4.6 34.8 1.0 C2 D:J0X6 4.7 45.9 1.0 C2 C:DC5 4.7 29.8 1.0 C8 C:J0X7 4.8 32.4 1.0 N4 C:J0X7 4.8 31.6 1.0 O2 D:J0X6 4.9 46.2 1.0 N3 D:DG8 4.9 36.6 1.0 C4 D:DG8 5.0 38.2 1.0 O2 C:DC5 5.0 31.2 1.0

Copper binding site 5 out of 12 in the Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs within 5.0Å range: probe atom residue distance (Å) B Occ E:Cu101 b:42.0 occ:1.00 N4 F:J0X6 1.8 36.7 1.0 N4 E:J0X7 2.0 32.0 1.0 O8 E:J0X7 2.1 33.6 1.0 O9 F:J0X6 2.2 37.5 1.0 C8 F:J0X6 2.8 40.0 1.0 C7 F:J0X6 2.8 37.7 1.0 C7 E:J0X7 2.8 35.6 1.0 C8 E:J0X7 2.9 31.2 1.0 C4 F:J0X6 2.9 41.1 1.0 N2 G:DG8 3.1 36.1 1.0 C4 E:J0X7 3.1 36.4 1.0 N3 F:J0X6 3.3 43.2 1.0 N3 E:J0X7 3.4 37.8 1.0 N3 E:J0X6 3.4 29.1 1.0 O9 F:J0X7 3.5 33.1 1.0 C2 G:DG8 3.6 39.5 1.0 C2 E:J0X6 3.7 35.1 1.0 C4 E:J0X6 3.8 33.3 1.0 O2 E:J0X6 3.9 36.9 1.0 O9 E:J0X7 4.0 37.2 1.0 O8 F:J0X6 4.1 44.6 1.0 N1 G:DG8 4.1 41.4 1.0 O2 F:DC5 4.1 47.8 1.0 N3 G:DG8 4.1 37.2 1.0 CU E:CU102 4.2 40.4 1.0 C5 F:J0X6 4.2 43.3 1.0 N4 E:J0X6 4.3 37.1 1.0 C5 E:J0X7 4.3 35.4 1.0 C7 F:J0X7 4.3 38.8 1.0 N1 E:J0X6 4.4 36.8 1.0 N3 F:DC5 4.5 45.1 1.0 C2 F:J0X6 4.6 48.5 1.0 C2 F:DC5 4.6 47.7 1.0 C5 E:J0X6 4.6 33.7 1.0 C2 E:J0X7 4.7 37.8 1.0 C6 E:J0X6 4.8 35.1 1.0 O F:HOH102 4.8 38.3 1.0 O8 F:J0X7 4.9 43.3 1.0

Copper binding site 6 out of 12 in the Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs within 5.0Å range: probe atom residue distance (Å) B Occ E:Cu102 b:40.4 occ:1.00 O8 E:J0X6 2.0 35.0 1.0 N4 E:J0X6 2.0 37.1 1.0 N4 F:J0X7 2.0 39.4 1.0 O9 F:J0X7 2.2 33.1 1.0 C7 E:J0X6 2.8 35.9 1.0 C7 F:J0X7 2.9 38.8 1.0 O8 E:J0X7 3.0 33.6 1.0 C8 E:J0X6 3.0 35.8 1.0 C8 F:J0X7 3.0 42.0 1.0 C4 E:J0X6 3.1 33.3 1.0 C4 F:J0X7 3.1 44.6 1.0 N3 E:J0X6 3.2 29.1 1.0 N3 F:J0X7 3.3 43.8 1.0 N1 F:DG8 3.5 40.2 1.0 C7 E:J0X7 3.5 35.6 1.0 C6 F:DG8 3.7 39.3 1.0 O9 E:J0X7 3.7 37.2 1.0 O6 F:DG8 3.7 40.5 1.0 O9 E:J0X6 3.9 42.6 1.0 N3 E:DC5 3.9 37.4 1.0 N3 F:J0X6 4.0 43.2 1.0 N4 E:DC5 4.1 36.7 1.0 O8 F:J0X7 4.1 43.3 1.0 C2 F:DG8 4.1 39.1 1.0 CU E:CU101 4.2 42.0 1.0 O F:HOH101 4.2 42.6 1.0 C4 E:DC5 4.3 35.7 1.0 C5 E:J0X6 4.3 33.7 1.0 N4 F:J0X6 4.4 36.7 1.0 C5 F:J0X7 4.4 49.3 1.0 C4 F:J0X6 4.4 41.1 1.0 C5 F:DG8 4.5 42.1 1.0 C2 E:J0X6 4.5 35.1 1.0 N2 F:DG8 4.5 38.1 1.0 C2 F:J0X7 4.6 52.3 1.0 C2 F:J0X6 4.7 48.5 1.0 C8 E:J0X7 4.7 31.2 1.0 C2 E:DC5 4.8 34.8 1.0 N4 E:J0X7 4.8 32.0 1.0 O2 F:J0X6 4.8 51.3 1.0 N3 F:DG8 4.9 39.9 1.0 C4 F:DG8 4.9 41.8 1.0

Copper binding site 7 out of 12 in the Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs within 5.0Å range: probe atom residue distance (Å) B Occ G:Cu101 b:46.4 occ:1.00 N4 G:J0X7 1.8 39.0 1.0 O8 H:J0X6 1.9 42.8 1.0 N4 H:J0X6 2.0 44.3 1.0 O9 G:J0X7 2.2 37.1 1.0 C7 H:J0X6 2.7 41.5 1.0 C8 G:J0X7 2.7 39.8 1.0 C7 G:J0X7 2.8 40.2 1.0 C8 H:J0X6 2.8 45.2 1.0 C4 G:J0X7 2.9 42.7 1.0 N2 E:DG8 3.0 40.5 1.0 C4 H:J0X6 3.2 47.4 1.0 N3 G:J0X7 3.3 40.0 1.0 N3 G:J0X6 3.4 37.7 1.0 C2 E:DG8 3.4 44.7 1.0 N3 H:J0X6 3.5 49.2 1.0 O8 H:J0X7 3.7 35.6 1.0 C2 G:J0X6 3.8 43.6 1.0 C4 G:J0X6 3.8 38.4 1.0 O9 H:J0X6 3.9 48.3 1.0 N1 E:DG8 3.9 41.9 1.0 N3 E:DG8 4.0 42.9 1.0 O2 G:J0X6 4.0 42.5 1.0 O8 G:J0X7 4.0 43.5 1.0 O2 H:DC5 4.1 49.3 1.0 C5 G:J0X7 4.2 44.8 1.0 N4 G:J0X6 4.2 42.7 1.0 CU G:CU102 4.3 44.9 1.0 C5 H:J0X6 4.4 48.5 1.0 C7 H:J0X7 4.4 41.4 1.0 N3 H:DC5 4.5 52.1 1.0 N1 G:J0X6 4.5 42.3 1.0 C5 G:J0X6 4.5 40.0 1.0 C2 G:J0X7 4.6 41.3 1.0 C2 H:DC5 4.6 50.1 1.0 C4 E:DG8 4.8 44.9 1.0 C6 G:J0X6 4.8 38.8 1.0 C2 H:J0X6 4.8 55.2 1.0 C6 E:DG8 4.9 40.7 1.0 O9 H:J0X7 4.9 41.1 1.0 O H:HOH204 4.9 41.0 1.0

Copper binding site 8 out of 12 in the Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs within 5.0Å range: probe atom residue distance (Å) B Occ G:Cu102 b:44.9 occ:1.00 O9 G:J0X6 2.0 38.8 1.0 N4 H:J0X7 2.0 43.6 1.0 N4 G:J0X6 2.0 42.7 1.0 O8 H:J0X7 2.0 35.6 1.0 C7 H:J0X7 2.8 41.4 1.0 C7 G:J0X6 2.8 43.9 1.0 C8 H:J0X7 2.9 45.8 1.0 O9 G:J0X7 2.9 37.1 1.0 C8 G:J0X6 3.0 43.7 1.0 C4 H:J0X7 3.1 48.7 1.0 C4 G:J0X6 3.1 38.4 1.0 N1 H:DG8 3.4 43.2 1.0 N3 G:J0X6 3.4 37.7 1.0 N3 H:J0X7 3.4 49.5 1.0 C7 G:J0X7 3.6 40.2 1.0 C6 H:DG8 3.6 47.5 1.0 O6 H:DG8 3.7 48.0 1.0 O8 G:J0X7 3.8 43.5 1.0 N3 G:DC5 3.8 41.5 1.0 N4 G:DC5 3.9 39.9 1.0 O8 G:J0X6 4.0 47.5 1.0 O9 H:J0X7 4.0 41.1 1.0 C2 H:DG8 4.0 46.4 1.0 C4 G:DC5 4.1 41.6 1.0 N3 H:J0X6 4.2 49.2 1.0 CU G:CU101 4.3 46.4 1.0 N4 H:J0X6 4.3 44.3 1.0 C5 H:J0X7 4.4 54.5 1.0 N2 H:DG8 4.4 45.1 1.0 C5 G:J0X6 4.4 40.0 1.0 C4 H:J0X6 4.5 47.4 1.0 C5 H:DG8 4.5 50.2 1.0 C2 G:J0X6 4.7 43.6 1.0 C2 G:DC5 4.7 38.3 1.0 C2 H:J0X7 4.7 54.1 1.0 C8 G:J0X7 4.8 39.8 1.0 N4 G:J0X7 4.8 39.0 1.0 N3 H:DG8 4.8 49.8 1.0 C2 H:J0X6 4.9 55.2 1.0 C4 H:DG8 5.0 48.9 1.0 O2 G:DC5 5.0 42.1 1.0

Copper binding site 9 out of 12 in the Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 9 of Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs within 5.0Å range: probe atom residue distance (Å) B Occ I:Cu101 b:42.5 occ:1.00 N4 J:J0X6 1.8 38.9 1.0 N4 I:J0X7 1.9 35.4 1.0 O8 J:J0X6 2.0 41.3 1.0 O9 I:J0X7 2.2 34.1 1.0 C7 J:J0X6 2.8 40.7 1.0 C8 J:J0X6 2.8 40.8 1.0 C8 I:J0X7 2.8 35.7 1.0 C7 I:J0X7 2.8 38.6 1.0 C4 J:J0X6 2.9 43.4 1.0 N2 K:DG8 3.0 38.2 1.0 C4 I:J0X7 3.0 38.4 1.0 N3 J:J0X6 3.3 43.4 1.0 N3 I:J0X7 3.3 40.6 1.0 N3 I:J0X6 3.5 35.5 1.0 C2 K:DG8 3.5 42.1 1.0 O8 J:J0X7 3.6 35.6 1.0 C4 I:J0X6 3.8 34.4 1.0 C2 I:J0X6 3.9 37.6 1.0 O9 J:J0X6 4.0 47.3 1.0 N1 K:DG8 4.0 40.7 1.0 CU I:CU102 4.1 39.4 1.0 N3 K:DG8 4.1 41.1 1.0 O8 I:J0X7 4.1 43.3 1.0 O2 J:DC5 4.1 49.7 1.0 O2 I:J0X6 4.1 37.7 1.0 C5 J:J0X6 4.1 47.2 1.0 N4 I:J0X6 4.2 36.5 1.0 C5 I:J0X7 4.3 37.5 1.0 C7 J:J0X7 4.3 41.4 1.0 N3 J:DC5 4.5 47.1 1.0 C2 J:J0X6 4.6 50.5 1.0 C5 I:J0X6 4.6 37.4 1.0 N1 I:J0X6 4.6 35.7 1.0 C2 J:DC5 4.6 48.8 1.0 C2 I:J0X7 4.6 39.4 1.0 O K:HOH201 4.7 46.3 1.0 O I:HOH202 4.8 42.0 1.0 C8 J:J0X7 4.9 42.3 1.0 C6 I:J0X6 4.9 37.1 1.0 O9 J:J0X7 4.9 41.2 1.0 N4 J:J0X7 4.9 41.5 1.0 C4 K:DG8 5.0 38.5 1.0

Copper binding site 10 out of 12 in the Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 10 of Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs within 5.0Å range: probe atom residue distance (Å) B Occ I:Cu102 b:39.4 occ:1.00 N4 I:J0X6 2.0 36.5 1.0 N4 J:J0X7 2.0 41.5 1.0 O9 I:J0X6 2.0 38.5 1.0 O8 J:J0X7 2.2 35.6 1.0 O9 I:J0X7 2.8 34.1 1.0 C7 I:J0X6 2.8 39.0 1.0 C7 J:J0X7 2.9 41.4 1.0 C8 I:J0X6 3.0 38.4 1.0 C8 J:J0X7 3.0 42.3 1.0 C4 I:J0X6 3.0 34.4 1.0 C4 J:J0X7 3.1 47.7 1.0 N3 I:J0X6 3.3 35.5 1.0 N3 J:J0X7 3.4 48.6 1.0 N1 J:DG8 3.4 44.1 1.0 C7 I:J0X7 3.5 38.6 1.0 O6 J:DG8 3.6 43.5 1.0 C6 J:DG8 3.6 43.9 1.0 O8 I:J0X7 3.7 43.3 1.0 N3 I:DC5 3.9 37.3 1.0 O8 I:J0X6 4.0 45.7 1.0 N4 I:DC5 4.0 36.8 1.0 N3 J:J0X6 4.0 43.4 1.0 CU I:CU101 4.1 42.5 1.0 C2 J:DG8 4.1 42.2 1.0 O9 J:J0X7 4.1 41.2 1.0 C5 I:J0X6 4.3 37.4 1.0 C4 I:DC5 4.3 37.2 1.0 N4 J:J0X6 4.4 38.9 1.0 C5 J:J0X7 4.4 50.9 1.0 C4 J:J0X6 4.4 43.4 1.0 C5 J:DG8 4.4 45.6 1.0 O J:HOH205 4.5 50.4 1.0 C2 I:J0X6 4.5 37.6 1.0 N2 J:DG8 4.6 40.2 1.0 C8 I:J0X7 4.6 35.7 1.0 C2 J:J0X7 4.7 52.0 1.0 N4 I:J0X7 4.7 35.4 1.0 C2 J:J0X6 4.7 50.5 1.0 C2 I:DC5 4.8 35.9 1.0 N3 J:DG8 4.9 43.0 1.0 O2 J:J0X6 4.9 56.1 1.0 C4 J:DG8 4.9 42.5 1.0

J.Kondo, A.Terashima, A.Yoshimura, Y.Tada, A.Ono. Dna Containing Cu(II)-Mediated 4-N-Carboxymethylcytosine Base Pairs To Be Published.