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Copper in PDB 7e1w: Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203

Enzymatic activity of Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203

All present enzymatic activity of Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203:
7.1.1.8; 7.1.1.9;

Other elements in 7e1w:

The structure of Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Fluorine (F) 6 atoms
Iron (Fe) 16 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203 (pdb code 7e1w). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 8 binding sites of Copper where determined in the Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203, PDB code: 7e1w:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Copper binding site 1 out of 8 in 7e1w

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Copper binding site 1 out of 8 in the Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu401

b:102.1
occ:1.00
 CU E:CU402 1.2 108.3 1.0
ND1 E:HIS281 2.1 73.0 1.0
SG E:CYS277 2.2 74.8 1.0
SG E:CYS273 2.2 75.7 1.0
CE1 E:HIS281 2.7 73.0 1.0
CB E:CYS273 2.8 75.7 1.0
SD E:MET284 3.1 76.7 1.0
CG E:HIS281 3.4 73.0 1.0
CB E:CYS277 3.4 74.8 1.0
O E:HIS281 3.7 73.0 1.0
ND1 E:HIS232 3.9 70.2 1.0
CA E:HIS281 3.9 73.0 1.0
NE2 E:HIS281 4.0 73.0 1.0
CB E:HIS281 4.0 73.0 1.0
CA E:CYS273 4.1 75.7 1.0
CG E:MET284 4.2 76.7 1.0
CE E:MET284 4.2 76.7 1.0
CD2 E:HIS281 4.3 73.0 1.0
C E:HIS281 4.3 73.0 1.0
N E:CYS277 4.3 74.8 1.0
C E:CYS273 4.4 75.7 1.0
CA E:CYS277 4.5 74.8 1.0
CB E:MET284 4.6 76.7 1.0
CE1 E:HIS232 4.8 70.2 1.0
N E:GLU275 4.8 76.7 1.0
O E:CYS273 4.8 75.7 1.0
CG E:HIS232 4.8 70.2 1.0
CB E:HIS232 4.8 70.2 1.0
N E:THR274 4.8 74.0 1.0
O E:GLU275 4.9 76.7 1.0
C E:GLU275 4.9 76.7 1.0
CA E:HIS232 5.0 70.2 1.0

Copper binding site 2 out of 8 in 7e1w

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Copper binding site 2 out of 8 in the Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu402

b:108.3
occ:1.00
 CU E:CU401 1.2 102.1 1.0
SG E:CYS277 2.2 74.8 1.0
SG E:CYS273 2.2 75.7 1.0
SD E:MET284 2.3 76.7 1.0
CB E:CYS273 2.9 75.7 1.0
ND1 E:HIS232 3.0 70.2 1.0
CE E:MET284 3.1 76.7 1.0
ND1 E:HIS281 3.3 73.0 1.0
CB E:CYS277 3.5 74.8 1.0
CG E:MET284 3.7 76.7 1.0
CE1 E:HIS281 3.8 73.0 1.0
CE1 E:HIS232 3.9 70.2 1.0
CG E:HIS232 3.9 70.2 1.0
CB E:HIS232 4.1 70.2 1.0
CB E:MET284 4.1 76.7 1.0
CA E:CYS273 4.4 75.7 1.0
O E:HIS281 4.4 73.0 1.0
CG E:HIS281 4.5 73.0 1.0
CA E:HIS232 4.6 70.2 1.0
CA E:HIS281 4.6 73.0 1.0
CA E:CYS277 4.8 74.8 1.0
N E:GLY233 4.8 74.1 1.0
N E:CYS277 4.9 74.8 1.0
CB E:HIS281 5.0 73.0 1.0
C E:CYS273 5.0 75.7 1.0

Copper binding site 3 out of 8 in 7e1w

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Copper binding site 3 out of 8 in the Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cu604

b:132.6
occ:1.00
 O F:HIS314 2.8 69.6 1.0
OH F:TYR154 3.9 71.3 1.0
C F:HIS314 4.0 69.6 1.0
O2A F:HEA606 4.2 70.7 1.0
OD1 F:ASP390 4.4 73.7 1.0
OG1 F:THR389 4.5 73.0 1.0
OD2 F:ASP390 4.6 73.7 1.0
CA F:MET315 4.8 74.2 1.0
N F:MET315 4.8 74.2 1.0
CG F:ASP390 4.8 73.7 1.0
CA F:HIS314 4.9 69.6 1.0
CZ F:TYR154 4.9 71.3 1.0

Copper binding site 4 out of 8 in 7e1w

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Copper binding site 4 out of 8 in the Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cu605

b:139.1
occ:1.00
 NE2 F:HIS314 1.4 69.6 1.0
ND1 F:HIS264 1.7 65.2 1.0
CE1 F:HIS264 2.1 65.2 1.0
CE1 F:HIS314 2.2 69.6 1.0
CE1 F:HIS313 2.6 71.0 1.0
CD2 F:HIS314 2.6 69.6 1.0
NE2 F:HIS313 2.9 71.0 1.0
CG F:HIS264 2.9 65.2 1.0
NE2 F:HIS264 3.3 65.2 1.0
ND1 F:HIS314 3.3 69.6 1.0
CG F:HIS314 3.5 69.6 1.0
ND1 F:HIS313 3.7 71.0 1.0
CD2 F:HIS264 3.7 65.2 1.0
CB F:HIS264 3.8 65.2 1.0
CD2 F:HIS313 4.0 71.0 1.0
CG F:HIS313 4.4 71.0 1.0
CA F:HIS264 4.5 65.2 1.0
NA F:HEA606 4.5 70.7 1.0
C1A F:HEA606 4.6 70.7 1.0
CHA F:HEA606 4.8 70.7 1.0
C4A F:HEA606 4.9 70.7 1.0
C4D F:HEA606 4.9 70.7 1.0
C2A F:HEA606 4.9 70.7 1.0
ND F:HEA606 5.0 70.7 1.0
FE F:HEA606 5.0 70.7 1.0

Copper binding site 5 out of 8 in 7e1w

Go back to Copper Binding Sites List in 7e1w
Copper binding site 5 out of 8 in the Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203 within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cu401

b:93.3
occ:1.00
 CU Q:CU402 1.2 86.6 1.0
SG Q:CYS277 2.1 59.6 1.0
SG Q:CYS273 2.2 61.2 1.0
SD Q:MET284 2.5 59.7 1.0
ND1 Q:HIS281 2.8 59.1 1.0
CB Q:CYS273 2.9 61.2 1.0
ND1 Q:HIS232 3.4 54.4 1.0
CE1 Q:HIS281 3.4 59.1 1.0
CB Q:CYS277 3.6 59.6 1.0
CE Q:MET284 3.6 59.7 1.0
CG Q:MET284 3.7 59.7 1.0
O Q:HIS281 3.9 59.1 1.0
CG Q:HIS281 4.0 59.1 1.0
CB Q:MET284 4.2 59.7 1.0
CE1 Q:HIS232 4.2 54.4 1.0
CA Q:HIS281 4.3 59.1 1.0
CA Q:CYS273 4.3 61.2 1.0
CG Q:HIS232 4.3 54.4 1.0
CB Q:HIS232 4.5 54.4 1.0
CB Q:HIS281 4.5 59.1 1.0
C Q:HIS281 4.6 59.1 1.0
NE2 Q:HIS281 4.6 59.1 1.0
N Q:CYS277 4.7 59.6 1.0
C Q:CYS273 4.7 61.2 1.0
CA Q:CYS277 4.7 59.6 1.0
CD1 Q:TRP138 4.8 57.5 1.0
CA Q:HIS232 4.9 54.4 1.0
CD2 Q:HIS281 5.0 59.1 1.0

Copper binding site 6 out of 8 in 7e1w

Go back to Copper Binding Sites List in 7e1w
Copper binding site 6 out of 8 in the Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203 within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cu402

b:86.6
occ:1.00
 CU Q:CU401 1.2 93.3 1.0
ND1 Q:HIS281 2.0 59.1 1.0
SG Q:CYS277 2.2 59.6 1.0
SG Q:CYS273 2.2 61.2 1.0
CE1 Q:HIS281 2.3 59.1 1.0
CB Q:CYS273 3.0 61.2 1.0
CG Q:HIS281 3.3 59.1 1.0
NE2 Q:HIS281 3.6 59.1 1.0
SD Q:MET284 3.7 59.7 1.0
CB Q:CYS277 3.7 59.6 1.0
O Q:HIS281 4.0 59.1 1.0
ND1 Q:HIS232 4.0 54.4 1.0
CD2 Q:HIS281 4.1 59.1 1.0
CB Q:HIS281 4.1 59.1 1.0
N Q:CYS277 4.1 59.6 1.0
CA Q:CYS273 4.1 61.2 1.0
C Q:CYS273 4.2 61.2 1.0
N Q:GLU275 4.2 63.1 1.0
O Q:GLU275 4.2 63.1 1.0
CA Q:HIS281 4.3 59.1 1.0
C Q:GLU275 4.3 63.1 1.0
O Q:CYS273 4.4 61.2 1.0
N Q:THR274 4.5 60.3 1.0
CA Q:CYS277 4.5 59.6 1.0
C Q:HIS281 4.6 59.1 1.0
CA Q:GLU275 4.6 63.1 1.0
CB Q:GLU275 4.6 63.1 1.0
CG Q:MET284 4.7 59.7 1.0
CB Q:HIS232 4.8 54.4 1.0
CA Q:HIS232 4.8 54.4 1.0
CE Q:MET284 4.8 59.7 1.0
N Q:MET276 4.8 58.7 1.0
CG Q:HIS232 4.8 54.4 1.0
C Q:MET276 4.8 58.7 1.0
N Q:GLY233 4.9 57.6 1.0
CE1 Q:HIS232 4.9 54.4 1.0

Copper binding site 7 out of 8 in 7e1w

Go back to Copper Binding Sites List in 7e1w
Copper binding site 7 out of 8 in the Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203 within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Cu604

b:121.7
occ:1.00
 OD1 R:ASP390 2.8 61.8 1.0
OD2 R:ASP390 2.9 61.8 1.0
CG R:ASP390 3.2 61.8 1.0
OH R:TYR154 3.3 61.1 1.0
OE2 Q:GLU275 3.8 63.1 1.0
CZ R:TYR154 4.1 61.1 1.0
OE1 Q:GLU275 4.2 63.1 1.0
CE2 R:TYR154 4.4 61.1 1.0
CD Q:GLU275 4.4 63.1 1.0
CB R:ASP390 4.7 61.8 1.0
O R:HIS314 5.0 58.6 1.0
OD1 Q:ASP244 5.0 64.8 1.0

Copper binding site 8 out of 8 in 7e1w

Go back to Copper Binding Sites List in 7e1w
Copper binding site 8 out of 8 in the Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203 within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Cu605

b:138.9
occ:1.00
 NE2 R:HIS314 2.1 58.6 1.0
ND1 R:HIS264 2.1 55.4 1.0
CE1 R:HIS313 2.5 58.6 1.0
NE2 R:HIS313 2.6 58.6 1.0
CE1 R:HIS314 2.7 58.6 1.0
CE1 R:HIS264 2.9 55.4 1.0
CD2 R:HIS314 3.2 58.6 1.0
CG R:HIS264 3.3 55.4 1.0
ND1 R:HIS313 3.7 58.6 1.0
CB R:HIS264 3.8 55.4 1.0
CD2 R:HIS313 3.9 58.6 1.0
ND1 R:HIS314 3.9 58.6 1.0
NE2 R:HIS264 4.1 55.4 1.0
CG R:HIS314 4.2 58.6 1.0
NA R:HEA606 4.3 58.5 1.0
CD2 R:HIS264 4.3 55.4 1.0
CG R:HIS313 4.4 58.6 1.0
C1A R:HEA606 4.5 58.5 1.0
C4A R:HEA606 4.6 58.5 1.0
CA R:HIS264 4.6 55.4 1.0
FE R:HEA606 4.6 58.5 1.0
ND R:HEA606 4.8 58.5 1.0
CHA R:HEA606 4.9 58.5 1.0
C4D R:HEA606 4.9 58.5 1.0
C3A R:HEA606 4.9 58.5 1.0
C2A R:HEA606 5.0 58.5 1.0

Reference:

S.Zhou, W.Wang, Y.Gao, H.Gong, Z.Rao. Cryo-Em Structure of Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv in the Presence of Q203 To Be Published.
Page generated: Wed Jul 31 08:28:06 2024

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