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Copper in PDB 7e1v: Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv

Enzymatic activity of Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv

All present enzymatic activity of Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv:
7.1.1.8; 7.1.1.9;

Other elements in 7e1v:

The structure of Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv also contains other interesting chemical elements:

Iron (Fe) 16 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv (pdb code 7e1v). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 8 binding sites of Copper where determined in the Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv, PDB code: 7e1v:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Copper binding site 1 out of 8 in 7e1v

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Copper binding site 1 out of 8 in the Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu401

b:51.3
occ:1.00
 CU E:CU402 1.2 51.4 1.0
ND1 E:HIS281 2.2 29.5 1.0
SG E:CYS273 2.3 30.2 1.0
SG E:CYS277 2.4 30.8 1.0
CE1 E:HIS281 2.9 29.5 1.0
CG E:HIS281 3.3 29.5 1.0
CB E:CYS273 3.3 30.2 1.0
CB E:CYS277 3.4 30.8 1.0
SD E:MET284 3.5 33.6 1.0
CB E:HIS281 3.8 29.5 1.0
ND1 E:HIS232 3.9 28.8 1.0
CA E:HIS281 3.9 29.5 1.0
O E:HIS281 3.9 29.5 1.0
N E:CYS277 4.0 30.8 1.0
NE2 E:HIS281 4.1 29.5 1.0
CD2 E:HIS281 4.3 29.5 1.0
CA E:CYS277 4.3 30.8 1.0
C E:GLU275 4.4 32.1 1.0
C E:HIS281 4.4 29.5 1.0
O E:GLU275 4.4 32.1 1.0
N E:GLU275 4.4 32.1 1.0
CA E:CYS273 4.6 30.2 1.0
CB E:GLU275 4.6 32.1 1.0
C E:CYS273 4.6 30.2 1.0
CG E:MET284 4.7 33.6 1.0
CE1 E:HIS232 4.7 28.8 1.0
CA E:GLU275 4.7 32.1 1.0
CE E:MET284 4.7 33.6 1.0
N E:MET276 4.8 29.8 1.0
O E:CYS273 4.8 30.2 1.0
C E:MET276 4.8 29.8 1.0
CG E:HIS232 4.8 28.8 1.0
CA E:HIS232 4.8 28.8 1.0
CB E:HIS232 4.9 28.8 1.0
CA E:MET276 4.9 29.8 1.0
N E:THR274 5.0 30.8 1.0

Copper binding site 2 out of 8 in 7e1v

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Copper binding site 2 out of 8 in the Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cu402

b:51.4
occ:1.00
 CU E:CU401 1.2 51.3 1.0
SG E:CYS273 2.2 30.2 1.0
SG E:CYS277 2.2 30.8 1.0
SD E:MET284 2.5 33.6 1.0
ND1 E:HIS232 3.0 28.8 1.0
ND1 E:HIS281 3.2 29.5 1.0
CB E:CYS273 3.3 30.2 1.0
CB E:CYS277 3.3 30.8 1.0
CE E:MET284 3.6 33.6 1.0
CE1 E:HIS232 3.8 28.8 1.0
CG E:MET284 3.9 33.6 1.0
CE1 E:HIS281 4.0 29.5 1.0
CG E:HIS232 4.0 28.8 1.0
O E:HIS281 4.2 29.5 1.0
CG E:HIS281 4.2 29.5 1.0
CA E:HIS281 4.2 29.5 1.0
CB E:HIS232 4.3 28.8 1.0
CB E:HIS281 4.5 29.5 1.0
CA E:CYS277 4.6 30.8 1.0
CA E:HIS232 4.6 28.8 1.0
N E:CYS277 4.6 30.8 1.0
CB E:MET284 4.7 33.6 1.0
CA E:CYS273 4.7 30.2 1.0
C E:HIS281 4.7 29.5 1.0
NE2 E:HIS232 5.0 28.8 1.0

Copper binding site 3 out of 8 in 7e1v

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Copper binding site 3 out of 8 in the Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cu604

b:67.8
occ:1.00
 OD1 F:ASP390 2.8 29.7 1.0
OD2 F:ASP390 3.3 29.7 1.0
CG F:ASP390 3.4 29.7 1.0
OE1 E:GLU275 3.9 32.1 1.0
OE2 E:GLU275 3.9 32.1 1.0
OH F:TYR154 4.1 27.5 1.0
CE2 F:TYR154 4.2 27.5 1.0
CD E:GLU275 4.3 32.1 1.0
CZ F:TYR154 4.7 27.5 1.0
OD1 E:ASP244 4.7 33.0 1.0
O F:HIS314 4.9 27.9 1.0
CB F:ASP390 4.9 29.7 1.0

Copper binding site 4 out of 8 in 7e1v

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Copper binding site 4 out of 8 in the Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cu605

b:48.8
occ:1.00
 NE2 F:HIS314 2.0 27.9 1.0
ND1 F:HIS264 2.0 27.1 1.0
CE1 F:HIS264 2.2 27.1 1.0
CE1 F:HIS313 2.4 28.1 1.0
CE1 F:HIS314 2.7 27.9 1.0
NE2 F:HIS313 2.9 28.1 1.0
CD2 F:HIS314 3.1 27.9 1.0
CG F:HIS264 3.4 27.1 1.0
NE2 F:HIS264 3.5 27.1 1.0
ND1 F:HIS313 3.6 28.1 1.0
NA F:HEA606 3.8 29.8 1.0
ND1 F:HIS314 3.8 27.9 1.0
C1A F:HEA606 3.9 29.8 1.0
CG F:HIS314 4.1 27.9 1.0
CD2 F:HIS264 4.1 27.1 1.0
FE F:HEA606 4.1 29.8 1.0
ND F:HEA606 4.1 29.8 1.0
CHA F:HEA606 4.2 29.8 1.0
CD2 F:HIS313 4.2 28.1 1.0
C4D F:HEA606 4.2 29.8 1.0
C4A F:HEA606 4.3 29.8 1.0
CB F:HIS264 4.3 27.1 1.0
C2A F:HEA606 4.5 29.8 1.0
CG F:HIS313 4.5 28.1 1.0
C3A F:HEA606 4.7 29.8 1.0
CG2 F:VAL267 4.8 25.4 1.0
C1D F:HEA606 4.8 29.8 1.0
CA F:HIS264 4.9 27.1 1.0
NB F:HEA606 4.9 29.8 1.0
CHB F:HEA606 5.0 29.8 1.0

Copper binding site 5 out of 8 in 7e1v

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Copper binding site 5 out of 8 in the Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cu401

b:72.8
occ:1.00
 CU Q:CU402 1.2 68.6 1.0
SG Q:CYS277 2.2 45.0 1.0
SG Q:CYS273 2.3 44.5 1.0
SD Q:MET284 2.4 45.9 1.0
ND1 Q:HIS281 3.1 42.8 1.0
ND1 Q:HIS232 3.1 41.4 1.0
CB Q:CYS273 3.1 44.5 1.0
CB Q:CYS277 3.3 45.0 1.0
CE Q:MET284 3.6 45.9 1.0
CE1 Q:HIS281 3.7 42.8 1.0
CG Q:MET284 3.9 45.9 1.0
CE1 Q:HIS232 3.9 41.4 1.0
CG Q:HIS281 4.1 42.8 1.0
CG Q:HIS232 4.2 41.4 1.0
O Q:HIS281 4.2 42.8 1.0
CA Q:HIS281 4.3 42.8 1.0
CB Q:MET284 4.4 45.9 1.0
CB Q:HIS232 4.4 41.4 1.0
CB Q:HIS281 4.5 42.8 1.0
CA Q:CYS273 4.5 44.5 1.0
CA Q:CYS277 4.6 45.0 1.0
N Q:CYS277 4.7 45.0 1.0
CA Q:HIS232 4.7 41.4 1.0
C Q:HIS281 4.7 42.8 1.0
NE2 Q:HIS281 5.0 42.8 1.0
C Q:CYS273 5.0 44.5 1.0

Copper binding site 6 out of 8 in 7e1v

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Copper binding site 6 out of 8 in the Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cu402

b:68.6
occ:1.00
 CU Q:CU401 1.2 72.8 1.0
ND1 Q:HIS281 2.0 42.8 1.0
SG Q:CYS277 2.3 45.0 1.0
SG Q:CYS273 2.4 44.5 1.0
CE1 Q:HIS281 2.6 42.8 1.0
CB Q:CYS273 3.1 44.5 1.0
CG Q:HIS281 3.2 42.8 1.0
CB Q:CYS277 3.4 45.0 1.0
SD Q:MET284 3.5 45.9 1.0
NE2 Q:HIS281 3.8 42.8 1.0
O Q:HIS281 3.8 42.8 1.0
CB Q:HIS281 3.9 42.8 1.0
ND1 Q:HIS232 4.0 41.4 1.0
CA Q:HIS281 4.0 42.8 1.0
O Q:GLU275 4.1 43.8 1.0
CD2 Q:HIS281 4.1 42.8 1.0
N Q:CYS277 4.2 45.0 1.0
N Q:GLU275 4.2 43.8 1.0
C Q:GLU275 4.3 43.8 1.0
CA Q:CYS273 4.3 44.5 1.0
C Q:CYS273 4.4 44.5 1.0
C Q:HIS281 4.4 42.8 1.0
CA Q:CYS277 4.4 45.0 1.0
CB Q:GLU275 4.6 43.8 1.0
CA Q:GLU275 4.6 43.8 1.0
O Q:CYS273 4.6 44.5 1.0
CG Q:MET284 4.7 45.9 1.0
N Q:THR274 4.7 42.7 1.0
CE Q:MET284 4.7 45.9 1.0
CE1 Q:HIS232 4.8 41.4 1.0
N Q:MET276 4.8 40.3 1.0
C Q:MET276 4.9 40.3 1.0
CG Q:HIS232 4.9 41.4 1.0
CA Q:HIS232 4.9 41.4 1.0
CB Q:HIS232 5.0 41.4 1.0

Copper binding site 7 out of 8 in 7e1v

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Copper binding site 7 out of 8 in the Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cu403

b:82.5
occ:1.00
 OE2 Q:GLU275 3.6 43.8 1.0
OE1 Q:GLU275 3.6 43.8 1.0
OD1 R:ASP390 3.8 40.0 1.0
CD Q:GLU275 4.0 43.8 1.0
CB R:ASP390 4.2 40.0 1.0
CG R:ASP390 4.2 40.0 1.0
O Q:THR274 4.3 42.7 1.0
OD2 Q:ASP244 4.4 44.9 1.0
CE2 R:TYR154 4.5 33.5 1.0
OH R:TYR154 4.5 33.5 1.0
OD1 Q:ASP244 4.7 44.9 1.0
CG Q:ASP244 5.0 44.9 1.0

Copper binding site 8 out of 8 in 7e1v

Go back to Copper Binding Sites List in 7e1v
Copper binding site 8 out of 8 in the Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Cu604

b:54.3
occ:1.00
 NE2 R:HIS314 2.0 37.4 1.0
ND1 R:HIS264 2.0 34.8 1.0
CE1 R:HIS264 2.1 34.8 1.0
CE1 R:HIS314 2.3 37.4 1.0
CE1 R:HIS313 2.4 38.0 1.0
NE2 R:HIS313 3.2 38.0 1.0
CD2 R:HIS314 3.2 37.4 1.0
CG R:HIS264 3.4 34.8 1.0
ND1 R:HIS313 3.4 38.0 1.0
NE2 R:HIS264 3.4 34.8 1.0
ND1 R:HIS314 3.5 37.4 1.0
C1A R:HEA605 3.8 38.4 1.0
NA R:HEA605 3.8 38.4 1.0
CG R:HIS314 3.9 37.4 1.0
CHA R:HEA605 4.0 38.4 1.0
CD2 R:HIS264 4.0 34.8 1.0
C4D R:HEA605 4.2 38.4 1.0
ND R:HEA605 4.2 38.4 1.0
FE R:HEA605 4.2 38.4 1.0
CB R:HIS264 4.3 34.8 1.0
C4A R:HEA605 4.4 38.4 1.0
C2A R:HEA605 4.4 38.4 1.0
CD2 R:HIS313 4.4 38.0 1.0
CG R:HIS313 4.5 38.0 1.0
C3A R:HEA605 4.7 38.4 1.0
CA R:HIS264 4.9 34.8 1.0
C1D R:HEA605 5.0 38.4 1.0
CG2 R:VAL267 5.0 32.7 1.0

Reference:

S.Zhou, W.Wang, Y.Gao, H.Gong, Z.Rao. Cryo-Em Structure of Apo Hybrid Respiratory Supercomplex Consisting of Mycobacterium Tuberculosis Complexiii and Mycobacterium Smegmatis Complexiv To Be Published.
Page generated: Wed Jul 31 08:27:57 2024

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