Copper in PDB 6zif: The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242)

The structure of The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242), PDB code: 6zif was solved by A.Basle, J.Lee, C.Dennison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.77 / 2.20
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	60.76, 60.76, 231.93, 90, 90, 90
R / Rfree (%)	21.1 / 27

The structure of The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242) also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 68;

Binding sites:

The binding sites of Copper atom in the The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242) (pdb code 6zif). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 68 binding sites of Copper where determined in the The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242), PDB code: 6zif:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Copper binding site 1 out of 68 in the The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu1129 b:44.1 occ:1.00 SG A:CYS71 2.2 38.7 1.0 SG A:CYS11 2.4 40.2 1.0 SD A:MET60 2.4 34.0 1.0 SD A:MET108 2.6 52.8 1.0 CG A:MET108 2.8 48.9 1.0 CU A:CU11131 3.1 47.3 1.0 CE A:MET60 3.2 34.7 1.0 CE A:MET108 3.2 66.2 1.0 CB A:CYS71 3.3 37.3 1.0 CB A:CYS11 3.3 33.9 1.0 CU A:CU11130 3.4 46.4 1.0 CG A:MET60 3.6 37.1 1.0 CB A:MET108 4.2 43.3 1.0 CA A:CYS11 4.6 39.1 1.0 CA A:CYS71 4.6 39.9 1.0 CA A:CYS105 4.8 36.1 1.0 C A:CYS11 4.8 36.7 1.0 O A:CYS105 5.0 44.3 1.0 CB A:MET60 5.0 32.6 1.0 SG A:CYS105 5.0 40.7 1.0

Copper binding site 2 out of 68 in the The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu1130 b:46.4 occ:1.00 SG A:CYS11 2.2 40.2 1.0 SG A:CYS15 2.2 34.6 1.0 O A:CYS11 2.6 36.9 1.0 CU A:CU11131 2.6 47.3 1.0 C A:CYS11 3.2 36.7 1.0 CB A:CYS11 3.3 33.9 1.0 CB A:CYS15 3.3 28.8 1.0 CE A:MET60 3.4 34.7 1.0 CA A:CYS11 3.4 39.1 1.0 CU A:CU11129 3.4 44.1 1.0 CU A:CU11133 3.6 41.7 1.0 SG A:CYS105 3.6 40.7 1.0 CU A:CU11132 3.9 42.8 1.0 N A:CYS15 3.9 30.7 1.0 SG A:CYS71 4.1 38.7 1.0 CA A:CYS15 4.1 31.9 1.0 SD A:MET60 4.2 34.0 1.0 N A:VAL12 4.2 34.6 1.0 SG A:CYS101 4.4 39.9 1.0 CA A:CYS105 4.5 36.1 1.0 N A:CYS105 4.6 33.5 1.0 CB A:CYS105 4.8 36.2 1.0 CB A:GLU14 4.8 39.8 1.0 CA A:VAL12 4.9 38.3 1.0 N A:CYS11 4.9 38.9 1.0 C A:GLU14 5.0 36.6 1.0

Copper binding site 3 out of 68 in the The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu1131 b:47.3 occ:1.00 SG A:CYS105 2.2 40.7 1.0 SG A:CYS71 2.3 38.7 1.0 CU A:CU11130 2.6 46.4 1.0 SG A:CYS15 3.0 34.6 1.0 CU A:CU11129 3.1 44.1 1.0 CU A:CU11132 3.1 42.8 1.0 CB A:CYS71 3.1 37.3 1.0 SG A:CYS11 3.2 40.2 1.0 CB A:CYS105 3.3 36.2 1.0 CA A:CYS105 3.6 36.1 1.0 CU A:CU11133 3.6 41.7 1.0 CA A:CYS71 3.6 39.9 1.0 CB A:CYS74 4.0 38.7 1.0 CB A:ALA56 4.1 32.8 1.0 CE A:MET60 4.2 34.7 1.0 O A:CYS71 4.2 45.2 1.0 C A:CYS71 4.4 48.4 1.0 SG A:CYS74 4.4 40.5 1.0 N A:CYS105 4.4 33.5 1.0 CB A:CYS15 4.7 28.8 1.0 C A:CYS105 4.8 40.0 1.0 SD A:MET60 4.8 34.0 1.0 N A:CYS71 4.8 33.3 1.0 O A:CYS105 4.9 44.3 1.0 CB A:CYS11 4.9 33.9 1.0

Copper binding site 4 out of 68 in the The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu1132 b:42.8 occ:1.00 SG A:CYS74 2.1 40.5 1.0 SG A:CYS15 2.1 34.6 1.0 CU A:CU11134 2.7 42.2 1.0 SG A:CYS105 2.8 40.7 1.0 CU A:CU11133 2.9 41.7 1.0 CU A:CU11135 2.9 41.1 1.0 CB A:CYS74 3.0 38.7 1.0 CU A:CU11131 3.1 47.3 1.0 SG A:CYS53 3.5 33.0 1.0 CB A:CYS15 3.6 28.8 1.0 CA A:CYS53 3.8 32.5 1.0 CU A:CU11130 3.9 46.4 1.0 CB A:ALA56 3.9 32.8 1.0 SG A:CYS101 3.9 39.9 1.0 CB A:CYS53 4.0 31.5 1.0 CA A:CYS74 4.3 44.5 1.0 CA A:CYS15 4.4 31.9 1.0 SG A:CYS78 4.4 44.8 1.0 O A:CYS53 4.6 35.3 1.0 CB A:CYS105 4.6 36.2 1.0 C A:CYS74 4.6 40.1 1.0 N A:CYS53 4.6 31.9 1.0 O A:CYS74 4.7 46.0 1.0 C A:CYS53 4.7 36.7 1.0 O A:MET52 4.8 37.0 1.0 SG A:CYS71 4.9 38.7 1.0 C A:MET52 5.0 32.1 1.0

Copper binding site 5 out of 68 in the The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu1133 b:41.7 occ:1.00 SG A:CYS105 2.1 40.7 1.0 SG A:CYS101 2.2 39.9 1.0 O A:CYS101 2.5 38.5 1.0 CU A:CU11134 2.9 42.2 1.0 CU A:CU11132 2.9 42.8 1.0 C A:CYS101 3.1 30.2 1.0 SG A:CYS15 3.1 34.6 1.0 CB A:CYS105 3.2 36.2 1.0 CB A:CYS101 3.3 28.2 1.0 CA A:CYS101 3.5 35.6 1.0 CU A:CU11130 3.6 46.4 1.0 CU A:CU11131 3.6 47.3 1.0 N A:CYS105 3.6 33.5 1.0 CU A:CU11135 3.8 41.1 1.0 CA A:CYS105 3.9 36.1 1.0 N A:ALA102 3.9 31.0 1.0 SG A:CYS78 4.0 44.8 1.0 CA A:ALA102 4.4 35.6 1.0 SG A:CYS74 4.5 40.5 1.0 CB A:CYS15 4.6 28.8 1.0 C A:ALA104 4.7 34.6 1.0 CB A:ALA104 4.7 41.7 1.0 CA A:CYS15 4.8 31.9 1.0 SG A:CYS11 4.8 40.2 1.0 N A:CYS15 4.9 30.7 1.0 CB A:CYS74 4.9 38.7 1.0 SG A:CYS53 5.0 33.0 1.0 N A:CYS101 5.0 37.3 1.0

Copper binding site 6 out of 68 in the The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu1134 b:42.2 occ:1.00 SG A:CYS101 2.2 39.9 1.0 SG A:CYS53 2.3 33.0 1.0 CU A:CU11132 2.7 42.8 1.0 CU A:CU11133 2.9 41.7 1.0 CU A:CU11136 2.9 42.8 1.0 CU A:CU11135 3.0 41.1 1.0 SG A:CYS78 3.0 44.8 1.0 CB A:CYS101 3.2 28.2 1.0 SG A:CYS15 3.3 34.6 1.0 CB A:CYS53 3.4 31.5 1.0 CB A:CYS18 3.6 36.0 1.0 CA A:CYS15 3.7 31.9 1.0 SG A:CYS74 3.8 40.5 1.0 CU A:CU11137 3.9 38.0 1.0 CB A:CYS15 3.9 28.8 1.0 SG A:CYS18 4.0 43.2 1.0 CA A:CYS53 4.2 32.5 1.0 SG A:CYS105 4.3 40.7 1.0 CA A:CYS101 4.5 35.6 1.0 O A:CYS15 4.5 33.1 1.0 N A:CYS15 4.5 30.7 1.0 O A:GLU14 4.6 32.7 1.0 C A:CYS15 4.6 32.9 1.0 C A:CYS101 4.7 30.2 1.0 CB A:CYS78 4.7 35.2 1.0 O A:CYS101 4.8 38.5 1.0 C A:GLU14 4.9 36.6 1.0

Copper binding site 7 out of 68 in the The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu1135 b:41.1 occ:1.00 SG A:CYS78 2.1 44.8 1.0 SG A:CYS74 2.1 40.5 1.0 O A:CYS74 2.4 46.0 1.0 CU A:CU11132 2.9 42.8 1.0 CU A:CU11134 3.0 42.2 1.0 SG A:CYS53 3.0 33.0 1.0 C A:CYS74 3.0 40.1 1.0 CB A:CYS74 3.2 38.7 1.0 CB A:CYS78 3.3 35.2 1.0 CA A:CYS74 3.4 44.5 1.0 CU A:CU11137 3.6 38.0 1.0 CU A:CU11136 3.7 42.8 1.0 N A:CYS78 3.8 35.2 1.0 CU A:CU11133 3.8 41.7 1.0 SG A:CYS105 3.9 40.7 1.0 CA A:CYS78 4.0 35.9 1.0 N A:ALA75 4.0 44.1 1.0 SG A:CYS49 4.5 38.9 1.0 CB A:CYS53 4.5 31.5 1.0 CA A:ALA75 4.5 39.7 1.0 SG A:CYS101 4.6 39.9 1.0 CB A:ALA77 4.6 39.9 1.0 CA A:CYS53 4.7 32.5 1.0 C A:ALA77 4.8 38.8 1.0 N A:CYS53 4.9 31.9 1.0 SG A:CYS15 4.9 34.6 1.0 N A:CYS74 4.9 42.8 1.0

Copper binding site 8 out of 68 in the The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu1136 b:42.8 occ:1.00 SG A:CYS18 2.2 43.2 1.0 SG A:CYS78 2.3 44.8 1.0 CU A:CU11137 2.7 38.0 1.0 SG A:CYS53 2.9 33.0 1.0 CU A:CU11134 2.9 42.2 1.0 CU A:CU11138 3.1 54.6 1.0 CU A:CU11139 3.3 42.0 1.0 CB A:CYS18 3.3 36.0 1.0 SG A:CYS49 3.4 38.9 1.0 CB A:CYS78 3.5 35.2 1.0 CB A:CYS101 3.7 28.2 1.0 CU A:CU11135 3.7 41.1 1.0 SG A:CYS98 3.9 38.3 1.0 CA A:CYS98 4.0 37.6 1.0 SG A:CYS101 4.1 39.9 1.0 CA A:CYS78 4.1 35.9 1.0 CB A:CYS98 4.3 32.7 1.0 O A:CYS98 4.4 44.7 1.0 CB A:CYS53 4.5 31.5 1.0 CA A:CYS18 4.6 34.8 1.0 C A:CYS98 4.7 43.3 1.0 C A:CYS18 4.9 33.5 1.0 N A:CYS78 4.9 35.2 1.0 SG A:CYS22 4.9 32.3 1.0 O A:GLN97 5.0 33.9 1.0

Copper binding site 9 out of 68 in the The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 9 of The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu1137 b:38.0 occ:1.00 SG A:CYS53 2.0 33.0 1.0 SG A:CYS49 2.2 38.9 1.0 O A:CYS49 2.3 28.5 1.0 CU A:CU11136 2.7 42.8 1.0 C A:CYS49 2.9 30.1 1.0 CU A:CU11138 3.0 54.6 1.0 CB A:CYS53 3.3 31.5 1.0 CB A:CYS49 3.3 32.2 1.0 CA A:CYS49 3.4 30.6 1.0 SG A:CYS78 3.5 44.8 1.0 CU A:CU11135 3.6 41.1 1.0 N A:ALA50 3.8 31.0 1.0 N A:CYS53 3.9 31.9 1.0 CU A:CU11134 3.9 42.2 1.0 CU A:CU11139 4.0 42.0 1.0 CA A:CYS53 4.1 32.5 1.0 SG A:CYS18 4.2 43.2 1.0 CA A:ALA50 4.3 27.9 1.0 SG A:CYS74 4.5 40.5 1.0 CA A:CYS78 4.8 35.9 1.0 CB A:CYS18 4.8 36.0 1.0 CB A:CYS78 4.8 35.2 1.0 N A:CYS49 4.8 28.0 1.0 CB A:MET52 4.8 32.7 1.0 C A:ALA50 4.8 26.7 1.0 N A:CYS78 4.9 35.2 1.0 C A:MET52 4.9 32.1 1.0 SG A:CYS22 4.9 32.3 1.0 O A:ALA50 5.0 27.9 1.0

Copper binding site 10 out of 68 in the The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 10 of The Structure of A Cytosolic Copper Storage Protein From Methylocystis Sp. Strain Rockwell (Atcc 49242) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu1138 b:54.6 occ:1.00 SG A:CYS49 2.1 38.9 1.0 SG A:CYS22 2.4 32.3 1.0 CU A:CU11139 2.5 42.0 1.0 CU A:CU11140 2.7 45.5 1.0 SG A:CYS98 2.7 38.3 1.0 CB A:CYS49 3.0 32.2 1.0 CU A:CU11137 3.0 38.0 1.0 CU A:CU11136 3.1 42.8 1.0 SG A:CYS18 3.6 43.2 1.0 CB A:CYS22 3.7 35.0 1.0 SG A:CYS81 3.9 36.2 1.0 CB A:CYS81 4.1 31.6 1.0 CU A:CU11141 4.1 39.9 1.0 CA A:CYS49 4.2 30.6 1.0 C A:CYS49 4.2 30.1 1.0 CB A:CYS98 4.2 32.7 1.0 O A:CYS49 4.5 28.5 1.0 N A:ALA50 4.5 31.0 1.0 SG A:CYS53 4.6 33.0 1.0 O A:CYS18 4.6 34.5 1.0 SG A:CYS78 4.7 44.8 1.0 CA A:CYS78 4.8 35.9 1.0 CA A:CYS98 4.9 37.6 1.0 CA A:CYS22 5.0 33.2 1.0

J.Lee, A.Basle, C.Dennison. The Importance of Sites at the Entrance of A Copper Storage Protein For Cu(I) Binding and Removal To Be Published.