Copper in PDB 6z9y: Copper Transporter Oprc

The structure of Copper Transporter Oprc, PDB code: 6z9y was solved by S.P.Bhamidimarri, B.Van Den Berg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	85.85 / 2.95
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	67.341, 197.668, 171.749, 90, 88.75, 90
R / Rfree (%)	24.2 / 30.2

The binding sites of Copper atom in the Copper Transporter Oprc (pdb code 6z9y). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Copper Transporter Oprc, PDB code: 6z9y:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in the Copper Transporter Oprc


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Copper Transporter Oprc within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu801 b:85.1 occ:1.00 SD A:MET325 2.3 88.2 1.0 SG A:CYS143 2.4 71.0 1.0 CE A:MET325 2.5 83.1 1.0 CG A:MET147 2.8 71.7 1.0 SD A:MET147 2.8 80.1 1.0 CE A:MET147 3.1 69.0 1.0 CB A:CYS143 3.5 69.1 1.0 CG A:MET325 3.8 76.7 1.0 CB A:MET147 4.0 68.6 1.0 CB A:MET325 4.0 71.0 1.0 ND2 A:ASN145 4.3 76.1 1.0 CA A:CYS143 4.7 66.3 1.0 N A:MET147 4.7 64.3 1.0 CB A:ASN145 4.8 67.6 1.0 CD A:PRO144 4.9 73.0 1.0 CG A:ASN145 4.9 69.4 1.0 CA A:MET147 5.0 65.2 1.0

Copper binding site 2 out of 4 in the Copper Transporter Oprc


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Copper Transporter Oprc within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu801 b:99.4 occ:1.00 CE B:MET147 2.4 80.2 1.0 SG B:CYS143 2.5 72.2 1.0 SD B:MET325 2.7 87.5 1.0 CE B:MET325 2.8 81.2 1.0 SD B:MET147 3.6 71.7 1.0 CG B:MET147 3.6 70.5 1.0 ND2 B:ASN145 3.6 68.7 1.0 CB B:CYS143 4.0 71.9 1.0 CG B:MET325 4.3 74.3 1.0 CB B:ASN145 4.4 66.1 1.0 CG B:ASN145 4.4 69.4 1.0 CD B:PRO144 4.4 61.6 1.0 N B:ASN145 4.6 68.0 1.0 CB B:MET325 4.6 71.8 1.0 CA B:CYS143 4.7 70.0 1.0 N B:PRO144 4.9 66.1 1.0

Copper binding site 3 out of 4 in the Copper Transporter Oprc


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Copper Transporter Oprc within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu801 b:109.5 occ:1.00 SD C:MET325 2.0 101.7 1.0 CE C:MET147 2.4 87.4 1.0 SG C:CYS143 2.4 85.2 1.0 CG C:MET325 2.8 86.8 1.0 CG C:MET147 2.9 88.7 1.0 CE C:MET325 3.2 94.2 1.0 SD C:MET147 3.2 102.8 1.0 ND2 C:ASN145 3.4 84.0 1.0 CB C:CYS143 3.6 80.0 1.0 CB C:MET325 4.0 85.4 1.0 CB C:MET147 4.4 85.5 1.0 CG C:ASN145 4.5 82.6 1.0 CA C:CYS143 4.5 71.7 1.0 CB C:ASN145 4.6 83.0 1.0 CD C:PRO144 4.7 69.6 1.0 N C:MET147 4.9 80.8 1.0 N C:ASN145 4.9 78.6 1.0

Copper binding site 4 out of 4 in the Copper Transporter Oprc


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Copper Transporter Oprc within 5.0Å range: probe atom residue distance (Å) B Occ D:Cu801 b:98.3 occ:1.00 CE D:MET325 1.9 86.7 1.0 SG D:CYS143 2.3 76.4 1.0 SD D:MET325 2.6 95.2 1.0 CE D:MET147 2.9 89.5 1.0 CB D:CYS143 3.2 70.5 1.0 SD D:MET147 3.2 90.3 1.0 CG D:MET147 3.5 84.5 1.0 CA D:CYS143 4.2 71.2 1.0 CG D:MET325 4.2 75.7 1.0 CB D:MET147 4.3 79.8 1.0 CD D:PRO144 4.3 77.3 1.0 CB D:MET325 4.4 69.3 1.0 CB D:ASN145 4.6 85.4 1.0 OD1 D:ASN145 4.6 86.8 1.0 N D:PRO144 4.6 72.2 1.0 N D:ASN145 4.7 79.8 1.0 C D:CYS143 4.7 68.6 1.0 N D:MET147 4.7 73.6 1.0

S.P.Bhamidimarri, T.R.Young, M.Shanmugam, S.Soderholm, B.Belzunces, S.Khalid, A.Basle, D.Bumann, B.Van Den Berg. Acquisition of Ionic Copper By A Bacterial Outer Membrane Protein To Be Published.