Copper in PDB 6z5y: Structure of A Novel Lpmo From Phytophthora Infestans

The structure of Structure of A Novel Lpmo From Phytophthora Infestans, PDB code: 6z5y was solved by S.Urresti, G.J.Davies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.79 / 1.01
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	36.293, 45.458, 53.687, 83.91, 71.85, 83.78
R / Rfree (%)	14.3 / 16.4

The binding sites of Copper atom in the Structure of A Novel Lpmo From Phytophthora Infestans (pdb code 6z5y). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Structure of A Novel Lpmo From Phytophthora Infestans, PDB code: 6z5y:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in the Structure of A Novel Lpmo From Phytophthora Infestans


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structure of A Novel Lpmo From Phytophthora Infestans within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu201 b:12.3 occ:1.00 ND1 A:HIS1 1.9 12.0 1.0 NE2 A:HIS96 1.9 10.8 1.0 N A:HIS1 2.2 10.7 1.0 CE1 A:HIS1 2.9 13.4 1.0 CE1 A:HIS96 2.9 12.4 1.0 CG A:HIS1 2.9 11.0 1.0 CD2 A:HIS96 2.9 10.4 1.0 OH A:TYR164 3.0 12.1 1.0 CA A:HIS1 3.2 8.9 1.0 CB A:HIS1 3.3 10.8 1.0 OE1 A:GLN162 3.9 14.5 1.0 O A:HOH305 4.0 21.9 1.0 NE2 A:HIS1 4.0 13.7 1.0 ND1 A:HIS96 4.0 11.4 1.0 CD2 A:HIS1 4.0 12.4 1.0 CG A:HIS96 4.1 9.8 1.0 CZ A:TYR164 4.1 10.1 1.0 O A:HOH407 4.2 14.6 1.0 C A:HIS1 4.5 8.2 1.0 CD A:GLN162 4.8 13.2 1.0 CG2 A:VAL95 4.8 15.1 1.0 CE2 A:TYR164 4.8 10.3 1.0 O A:HIS1 4.9 9.3 1.0 OE1 A:GLN153 4.9 17.3 0.7 NE2 A:GLN162 5.0 17.3 1.0 CE1 A:TYR164 5.0 9.8 1.0

Copper binding site 2 out of 2 in the Structure of A Novel Lpmo From Phytophthora Infestans


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Structure of A Novel Lpmo From Phytophthora Infestans within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu201 b:14.3 occ:1.00 ND1 B:HIS1 1.9 13.2 1.0 NE2 B:HIS96 1.9 12.6 1.0 N B:HIS1 2.2 11.8 1.0 O A:GLN177 2.4 16.2 0.5 CE1 B:HIS1 2.9 14.3 1.0 CG B:HIS1 2.9 14.1 1.0 CE1 B:HIS96 2.9 12.3 1.0 CD2 B:HIS96 3.0 11.8 1.0 OH B:TYR164 3.1 13.0 1.0 CA B:HIS1 3.2 10.0 1.0 C A:GLN177 3.2 17.7 0.5 CB B:HIS1 3.3 12.2 1.0 NE2 B:HIS1 4.0 16.0 1.0 CD2 B:HIS1 4.0 15.4 1.0 OE1 B:GLN162 4.0 16.0 1.0 ND1 B:HIS96 4.0 12.5 1.0 CG B:HIS96 4.1 11.0 1.0 CZ B:TYR164 4.2 11.4 1.0 O B:HOH377 4.3 14.4 1.0 C B:HIS1 4.5 9.0 1.0 CA A:GLN177 4.6 16.7 0.5 CG2 B:VAL95 4.8 13.6 1.0 CE2 B:TYR164 4.8 11.3 1.0 O B:HIS1 4.8 10.0 1.0 O B:HOH356 4.9 10.7 1.0 CD B:GLN162 4.9 15.5 1.0

F.Sabbadin, S.Urresti, B.Henrissat, P.Lindley, L.D.Gomez, R.Simister, P.H.Walton, G.J.Davies, N.C.Bruce, S.C.Whisson, S.J.Mcqueen-Mason. Secreted Pectin Monooxygenases Drive Plant Infection By Pathogenic Oomycetes Science 2021.
ISSN: ESSN 1095-9203
DOI: 10.1126/SCIENCE.ABJ1342