Copper in PDB 6yhv: Structural Insights Into Pseudomonas Aeruginosa Type Six Secretion System Exported Effector 8: Unliganded TSE8

The structure of Structural Insights Into Pseudomonas Aeruginosa Type Six Secretion System Exported Effector 8: Unliganded TSE8, PDB code: 6yhv was solved by M.A.Sainz-Polo, R.Capuni, G.Pretre, A.Gonzalez-Magana, M.Lucas, J.Altuna, I.Montanchez, P.Fucini, D.Albesa-Jove, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.83 / 1.89
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	66.506, 68.078, 77.604, 72.94, 68.84, 79.27
R / Rfree (%)	18.6 / 22.5

The binding sites of Copper atom in the Structural Insights Into Pseudomonas Aeruginosa Type Six Secretion System Exported Effector 8: Unliganded TSE8 (pdb code 6yhv). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Structural Insights Into Pseudomonas Aeruginosa Type Six Secretion System Exported Effector 8: Unliganded TSE8, PDB code: 6yhv:

Copper binding site 1 out of 1 in the Structural Insights Into Pseudomonas Aeruginosa Type Six Secretion System Exported Effector 8: Unliganded TSE8


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structural Insights Into Pseudomonas Aeruginosa Type Six Secretion System Exported Effector 8: Unliganded TSE8 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu601 b:32.4 occ:1.00 O A:HOH695 1.9 33.3 1.0 OD1 B:ASP408 2.0 39.5 1.0 OD1 A:ASP408 2.0 32.5 1.0 O B:HOH808 2.1 34.5 1.0 O B:HOH994 2.3 29.1 1.0 CG A:ASP408 2.8 34.1 1.0 CG B:ASP408 2.9 28.7 1.0 OD2 A:ASP408 2.9 22.1 1.0 OD2 B:ASP408 3.1 25.3 1.0 HD2 A:ARG139 3.4 36.8 1.0 HD2 B:ARG139 3.5 34.8 1.0 HD2 B:PRO409 3.6 34.6 1.0 HD2 A:PRO409 3.8 35.7 1.0 HH11 A:ARG139 4.0 31.0 1.0 HH11 B:ARG139 4.1 33.1 1.0 O A:PRO409 4.2 38.8 1.0 HG2 B:PRO409 4.2 39.3 1.0 O B:PRO409 4.2 33.5 1.0 CB A:ASP408 4.3 28.0 1.0 CB B:ASP408 4.3 32.6 1.0 CD A:ARG139 4.3 30.6 1.0 CD B:ARG139 4.3 29.0 1.0 HA B:ASP408 4.4 30.9 1.0 CD B:PRO409 4.4 28.8 1.0 HD3 A:ARG139 4.4 36.8 1.0 HD3 B:ARG139 4.4 34.8 1.0 HG2 A:PRO409 4.4 47.4 1.0 NH1 A:ARG139 4.5 25.9 1.0 HA A:ASP408 4.5 38.0 1.0 HG23 A:THR411 4.6 34.1 1.0 NH1 B:ARG139 4.6 27.6 1.0 CD A:PRO409 4.6 29.7 1.0 HB2 B:ARG139 4.7 29.3 1.0 CA B:ASP408 4.7 25.8 1.0 N B:PRO409 4.7 28.7 1.0 HB2 A:ASP408 4.7 33.6 1.0 HB2 B:ASP408 4.7 39.1 1.0 HG23 B:THR411 4.8 33.8 1.0 CA A:ASP408 4.8 31.7 1.0 C B:ASP408 4.8 32.6 1.0 HB3 A:ASP408 4.8 33.6 1.0 C A:ASP408 4.8 31.0 1.0 HB2 A:ARG139 4.8 27.8 1.0 CG B:PRO409 4.8 32.7 1.0 N A:PRO409 4.8 33.4 1.0 HB3 B:ASP408 4.8 39.1 1.0 HH12 A:ARG139 4.9 31.0 1.0 NE A:ARG139 4.9 26.2 1.0

A.Gonzalez-Magana, M.A.Sainz-Polo, G.Pretre, R.Capuni, M.Lucas, J.Altuna, I.Montanchez, P.Fucini, D.Albesa-Jove. Structural Insights Into Pseudomonas Aeruginosatype Six Secretion System Exported Effector 8. J.Struct.Biol. V. 212 07651 2020.
ISSN: ESSN 1095-8657
PubMed: 33096229
DOI: 10.1016/J.JSB.2020.107651