Atomistry » Copper » PDB 6vow-6xx3 » 6xts
Atomistry »
  Copper »
    PDB 6vow-6xx3 »
      6xts »

Copper in PDB 6xts: Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1D Complex

Enzymatic activity of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1D Complex

All present enzymatic activity of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1D Complex:
1.8.3.7;

Protein crystallography data

The structure of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1D Complex, PDB code: 6xts was solved by F.Leisinger, F.P.Seebeck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.36 / 1.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.104, 72.222, 76.886, 90, 90, 90
R / Rfree (%) 20 / 21.6

Other elements in 6xts:

The structure of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1D Complex also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Calcium (Ca) 2 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1D Complex (pdb code 6xts). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1D Complex, PDB code: 6xts:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 6xts

Go back to Copper Binding Sites List in 6xts
Copper binding site 1 out of 2 in the Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1D Complex


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1D Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu401

b:7.5
occ:0.67
 CU A:CU1401 0.0 7.5 0.7
CU A:CU1401 1.1 10.9 0.3
SG A:CYS274 1.8 11.4 0.3
SG C:CYS7 2.2 13.2 1.0
SG A:CYS274 2.3 10.3 0.7
SG A:CYS269 2.5 12.3 1.0
O2 A:OXY405 2.8 15.2 0.7
CB A:CYS274 3.1 10.7 0.3
CB A:CYS274 3.2 10.8 0.7
O1 A:OXY405 3.4 13.5 0.7
CB A:CYS269 3.4 12.3 1.0
CB C:CYS7 3.5 11.6 1.0
O A:HOH510 3.5 16.0 1.0
O A:CYS274 3.5 12.4 0.3
CA A:CYS269 3.8 9.8 1.0
CZ2 A:TRP228 3.8 8.9 1.0
CB A:ARG276 3.9 14.0 1.0
C A:CYS274 4.1 14.1 0.3
OH A:TYR273 4.2 13.5 0.3
CA A:CYS274 4.3 12.9 0.3
O A:HOH501 4.3 16.5 0.7
NE1 A:TRP228 4.3 9.9 1.0
CE2 A:TRP228 4.4 8.1 1.0
N A:CYS269 4.5 9.8 1.0
CZ A:TYR273 4.5 12.2 0.3
N A:ARG276 4.6 13.6 1.0
CA A:CYS274 4.6 11.4 0.7
CA C:CYS7 4.6 12.2 1.0
CE1 A:TYR273 4.7 13.3 0.3
CA A:ARG276 4.7 13.0 1.0
CG A:ARG276 4.7 12.6 1.0
CD A:ARG276 4.8 12.6 1.0
CH2 A:TRP228 4.8 9.3 1.0
NH1 A:ARG276 5.0 14.7 1.0

Copper binding site 2 out of 2 in 6xts

Go back to Copper Binding Sites List in 6xts
Copper binding site 2 out of 2 in the Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1D Complex


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme - Fge:Cu:S:O2-1D Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu401

b:10.9
occ:0.33
 CU A:CU1401 0.0 10.9 0.3
CU A:CU1401 1.1 7.5 0.7
SG A:CYS269 2.0 12.3 1.0
SG A:CYS274 2.0 11.4 0.3
SG A:CYS274 2.1 10.3 0.7
CB A:CYS269 2.8 12.3 1.0
O A:CYS274 2.9 12.4 0.3
SG C:CYS7 3.1 13.2 1.0
CB A:ARG276 3.3 14.0 1.0
CB A:CYS274 3.3 10.8 0.7
O2 A:OXY405 3.3 15.2 0.7
CB A:CYS274 3.4 10.7 0.3
CA A:CYS269 3.5 9.8 1.0
N A:ARG276 3.7 13.6 1.0
C A:CYS274 3.7 14.1 0.3
CA A:ARG276 3.8 13.0 1.0
CZ2 A:TRP228 3.9 8.9 1.0
C A:ARG276 4.1 16.2 1.0
O1 A:OXY405 4.1 13.5 0.7
CA A:CYS274 4.2 12.9 0.3
CG A:ARG276 4.3 12.6 1.0
CB C:CYS7 4.4 11.6 1.0
N A:CYS269 4.4 9.8 1.0
O A:ARG276 4.5 15.4 1.0
O A:HOH510 4.5 16.0 1.0
CA A:CYS274 4.6 11.4 0.7
C A:CYS269 4.6 10.6 1.0
CE2 A:TRP228 4.6 8.1 1.0
N A:TYR277 4.6 15.6 1.0
C A:CYS274 4.7 9.6 0.7
N A:HIS270 4.7 12.0 1.0
CH2 A:TRP228 4.7 9.3 1.0
CD A:ARG276 4.7 12.6 1.0
NE1 A:TRP228 4.7 9.9 1.0
CA A:GLY265 4.8 8.7 1.0
OH A:TYR273 4.8 13.5 0.3
N A:ASN275 4.9 16.7 1.0
C A:ASN275 4.9 12.4 1.0
O A:HOH501 4.9 16.5 0.7

Reference:

F.Leisinger, D.A.Miarzlou, F.P.Seebeck. Crystal Structure Reveals Non-Coordinative Binding of O2 to the Copper Center of the Formylglycine-Generating Enzyme To Be Published.
Page generated: Wed Jul 31 07:51:11 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy