Copper in PDB 6wti: The Cryo-Em Structure of the Ubiquinol Oxidase From Escherichia Coli

The structure of The Cryo-Em Structure of the Ubiquinol Oxidase From Escherichia Coli also contains other interesting chemical elements:

Iron

(Fe)

2 atoms

The binding sites of Copper atom in the The Cryo-Em Structure of the Ubiquinol Oxidase From Escherichia Coli (pdb code 6wti). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the The Cryo-Em Structure of the Ubiquinol Oxidase From Escherichia Coli, PDB code: 6wti:

Copper binding site 1 out of 1 in the The Cryo-Em Structure of the Ubiquinol Oxidase From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of The Cryo-Em Structure of the Ubiquinol Oxidase From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu1003 b:32.5 occ:1.00 NE2 A:HIS334 1.9 24.3 1.0 ND1 A:HIS284 2.0 25.1 1.0 CE1 A:HIS334 2.3 24.3 1.0 CE1 A:HIS284 2.5 25.1 1.0 NE2 A:HIS333 2.6 24.3 1.0 CG A:HIS284 3.0 25.1 1.0 CD2 A:HIS334 3.2 24.3 1.0 CE1 A:HIS333 3.4 24.3 1.0 ND1 A:HIS334 3.5 24.3 1.0 NE2 A:HIS284 3.5 25.1 1.0 CD2 A:HIS333 3.6 24.3 1.0 CB A:HIS284 3.7 25.1 1.0 CD2 A:HIS284 3.8 25.1 1.0 CHA A:HEO1002 3.9 24.5 1.0 C1A A:HEO1002 3.9 24.5 1.0 CG A:HIS334 4.0 24.3 1.0 CA A:HIS284 4.1 25.1 1.0 NA A:HEO1002 4.1 24.5 1.0 C4D A:HEO1002 4.2 24.5 1.0 ND A:HEO1002 4.4 24.5 1.0 C2A A:HEO1002 4.5 24.5 1.0 ND1 A:HIS333 4.6 24.3 1.0 CG2 A:VAL287 4.7 24.8 1.0 CG A:HIS333 4.7 24.3 1.0 FE A:HEO1002 4.8 24.5 1.0 C4A A:HEO1002 4.8 24.5 1.0 C3D A:HEO1002 4.9 24.5 1.0

C.C.Su, M.Lyu, C.E.Morgan, J.R.Bolla, C.V.Robinson, E.W.Yu. A 'Build and Retrieve' Methodology to Simultaneously Solve Cryo-Em Structures of Membrane Proteins. Nat.Methods V. 18 69 2021.
ISSN: ESSN 1548-7105
PubMed: 33408407
DOI: 10.1038/S41592-020-01021-2