Atomistry » Copper » PDB 6vow-6xx3 » 6wis
Atomistry »
  Copper »
    PDB 6vow-6xx3 »
      6wis »

Copper in PDB 6wis: Copper Resistance Protein Copg- Form 1

Protein crystallography data

The structure of Copper Resistance Protein Copg- Form 1, PDB code: 6wis was solved by A.C.Hausrath, A.Ly, M.M.Mcevoy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.06 / 2.00
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 86.130, 86.130, 58.560, 90.00, 90.00, 120.00
R / Rfree (%) 17.2 / 22

Other elements in 6wis:

The structure of Copper Resistance Protein Copg- Form 1 also contains other interesting chemical elements:

Zinc (Zn) 15 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Copper Resistance Protein Copg- Form 1 (pdb code 6wis). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 8 binding sites of Copper where determined in the Copper Resistance Protein Copg- Form 1, PDB code: 6wis:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Copper binding site 1 out of 8 in 6wis

Go back to Copper Binding Sites List in 6wis
Copper binding site 1 out of 8 in the Copper Resistance Protein Copg- Form 1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Copper Resistance Protein Copg- Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu201

b:23.2
occ:1.00
 SG A:CYS16 2.2 26.6 1.0
ND1 A:HIS55 2.2 23.7 1.0
SG A:CYS54 2.3 27.5 1.0
CU A:CU202 2.9 26.3 1.0
CG A:HIS55 3.0 21.0 1.0
CU A:CU203 3.1 29.6 1.0
CB A:CYS54 3.1 25.6 1.0
CB A:CYS16 3.1 26.4 1.0
CE1 A:HIS55 3.2 23.2 1.0
CB A:HIS55 3.2 22.5 1.0
C A:CYS54 3.3 26.5 1.0
N A:HIS55 3.4 22.1 1.0
CA A:CYS16 3.5 26.3 1.0
O A:CYS54 3.6 20.5 1.0
NE2 A:HIS67 3.7 21.1 1.0
CA A:CYS54 3.7 23.7 1.0
N A:CYS16 3.8 23.9 1.0
CA A:HIS55 3.9 21.3 1.0
CD2 A:HIS55 4.2 22.6 1.0
NE2 A:HIS55 4.3 23.5 1.0
SG A:CYS13 4.3 30.5 1.0
CE1 A:HIS67 4.3 26.9 1.0
N A:CYS54 4.3 24.1 1.0
SG A:CYS15 4.4 26.0 1.0
CD2 A:HIS67 4.4 20.6 1.0
C A:CYS15 4.7 23.7 1.0
C A:CYS16 4.9 26.0 1.0

Copper binding site 2 out of 8 in 6wis

Go back to Copper Binding Sites List in 6wis
Copper binding site 2 out of 8 in the Copper Resistance Protein Copg- Form 1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Copper Resistance Protein Copg- Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu202

b:26.3
occ:1.00
 NE2 A:HIS67 2.1 21.1 1.0
SG A:CYS15 2.3 26.0 1.0
SG A:CYS54 2.3 27.5 1.0
CU A:CU203 2.8 29.6 1.0
CU A:CU201 2.9 23.2 1.0
CE1 A:HIS67 3.0 26.9 1.0
CU A:CU204 3.1 32.0 1.0
CD2 A:HIS67 3.2 20.6 1.0
CB A:CYS15 3.2 22.3 1.0
CB A:CYS54 3.6 25.6 1.0
SE A:MSE90 3.6 32.9 0.8
N A:CYS16 3.7 23.9 1.0
SG A:CYS13 3.9 30.5 1.0
SG A:CYS16 3.9 26.6 1.0
CG A:MSE90 4.0 28.1 1.0
C A:CYS15 4.0 23.7 1.0
CA A:CYS15 4.1 28.5 1.0
ND1 A:HIS67 4.2 24.6 1.0
CG A:HIS67 4.3 22.9 1.0
CG A:MSE97 4.3 27.6 1.0
SE A:MSE97 4.4 31.3 0.8
ND1 A:HIS55 4.4 23.7 1.0
CA A:CYS16 4.4 26.3 1.0
O A:CYS15 4.6 28.9 1.0
CB A:MSE90 4.7 29.8 1.0
CE1 A:HIS55 4.8 23.2 1.0
N A:CYS15 4.8 23.9 1.0
CB A:CYS16 4.8 26.4 1.0
CA A:CYS54 4.9 23.7 1.0

Copper binding site 3 out of 8 in 6wis

Go back to Copper Binding Sites List in 6wis
Copper binding site 3 out of 8 in the Copper Resistance Protein Copg- Form 1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Copper Resistance Protein Copg- Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu203

b:29.6
occ:1.00
 N A:CYS16 2.1 23.9 1.0
SG A:CYS16 2.2 26.6 1.0
SG A:CYS13 2.3 30.5 1.0
SG A:CYS15 2.3 26.0 1.0
CU A:CU202 2.8 26.3 1.0
CB A:CYS16 2.9 26.4 1.0
CA A:CYS16 2.9 26.3 1.0
C A:CYS15 3.1 23.7 1.0
CU A:CU201 3.1 23.2 1.0
CB A:CYS13 3.2 29.7 1.0
N A:CYS15 3.3 23.9 1.0
CA A:CYS15 3.4 28.5 1.0
CB A:CYS15 3.4 22.3 1.0
O A:CYS13 3.6 31.9 1.0
C A:CYS13 3.6 30.3 1.0
CA A:CYS13 3.9 32.5 1.0
SG A:CYS54 4.0 27.5 1.0
C A:GLY14 4.1 26.2 1.0
N A:GLY14 4.1 34.5 1.0
O A:CYS15 4.1 28.9 1.0
CB A:CYS54 4.3 25.6 1.0
C A:CYS16 4.3 26.0 1.0
NE2 A:HIS67 4.4 21.1 1.0
CU A:CU204 4.5 32.0 1.0
N A:LYS17 4.6 26.2 1.0
CA A:GLY14 4.7 29.7 1.0
O A:GLY14 4.7 27.1 1.0
CE1 A:HIS67 4.7 26.9 1.0
ND1 A:HIS55 4.9 23.7 1.0

Copper binding site 4 out of 8 in 6wis

Go back to Copper Binding Sites List in 6wis
Copper binding site 4 out of 8 in the Copper Resistance Protein Copg- Form 1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Copper Resistance Protein Copg- Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu204

b:32.0
occ:1.00
 SG A:CYS15 2.3 26.0 1.0
SE A:MSE97 2.4 31.3 0.8
SE A:MSE90 2.4 32.9 0.8
SE B:MSE99 2.6 41.5 0.7
CU A:CU202 3.1 26.3 1.0
CB A:CYS15 3.3 22.3 1.0
CG B:MSE99 3.3 33.3 1.0
CE A:MSE90 3.5 30.2 1.0
CE B:MSE99 3.5 39.0 1.0
CG A:MSE90 3.5 28.1 1.0
CG A:MSE97 3.7 27.6 1.0
CB A:MSE90 3.7 29.8 1.0
CE A:MSE97 3.7 27.6 1.0
CB B:MSE99 4.1 35.8 1.0
NE2 A:HIS67 4.3 21.1 1.0
CU A:CU203 4.5 29.6 1.0
SG A:CYS13 4.5 30.5 1.0
CA A:CYS15 4.7 28.5 1.0
SG A:CYS54 4.7 27.5 1.0
N A:CYS15 4.9 23.9 1.0

Copper binding site 5 out of 8 in 6wis

Go back to Copper Binding Sites List in 6wis
Copper binding site 5 out of 8 in the Copper Resistance Protein Copg- Form 1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Copper Resistance Protein Copg- Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu201

b:26.2
occ:1.00
 ND1 B:HIS55 2.1 27.6 1.0
SG B:CYS16 2.2 27.7 1.0
SG B:CYS54 2.2 27.5 1.0
CU B:CU202 2.8 26.7 1.0
CG B:HIS55 3.0 26.3 1.0
CU B:CU203 3.1 31.3 1.0
CB B:CYS54 3.1 30.8 1.0
CE1 B:HIS55 3.2 30.2 1.0
CB B:CYS16 3.2 29.6 1.0
CB B:HIS55 3.2 19.2 1.0
C B:CYS54 3.3 32.0 1.0
N B:HIS55 3.3 24.0 1.0
CA B:CYS16 3.5 28.8 1.0
O B:CYS54 3.6 28.9 1.0
N B:CYS16 3.7 24.7 1.0
NE2 B:HIS67 3.8 28.3 1.0
CA B:CYS54 3.8 30.6 1.0
CA B:HIS55 3.9 24.7 1.0
CD2 B:HIS55 4.2 24.1 1.0
SG B:CYS13 4.2 29.8 1.0
NE2 B:HIS55 4.2 28.6 1.0
CE1 B:HIS67 4.3 27.7 1.0
N B:CYS54 4.4 28.9 1.0
CD2 B:HIS67 4.5 25.7 1.0
SG B:CYS15 4.5 30.1 1.0
C B:CYS15 4.6 27.2 1.0
C B:CYS16 4.9 31.9 1.0

Copper binding site 6 out of 8 in 6wis

Go back to Copper Binding Sites List in 6wis
Copper binding site 6 out of 8 in the Copper Resistance Protein Copg- Form 1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Copper Resistance Protein Copg- Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu202

b:26.7
occ:1.00
 NE2 B:HIS67 2.1 28.3 1.0
SG B:CYS54 2.2 27.5 1.0
SG B:CYS15 2.4 30.1 1.0
CU B:CU203 2.8 31.3 1.0
CU B:CU201 2.8 26.2 1.0
CE1 B:HIS67 3.0 27.7 1.0
CU B:CU204 3.1 33.3 1.0
CD2 B:HIS67 3.2 25.7 1.0
CB B:CYS15 3.2 24.3 1.0
CB B:CYS54 3.5 30.8 1.0
SE B:MSE90 3.6 34.1 0.7
N B:CYS16 3.7 24.7 1.0
SG B:CYS13 3.9 29.8 1.0
CG B:MSE90 3.9 32.8 1.0
C B:CYS15 3.9 27.2 1.0
SG B:CYS16 4.0 27.7 1.0
CA B:CYS15 4.1 25.4 1.0
ND1 B:HIS67 4.2 27.2 1.0
CG B:HIS67 4.3 26.9 1.0
ND1 B:HIS55 4.3 27.6 1.0
CA B:CYS16 4.4 28.8 1.0
SE B:MSE97 4.5 37.5 0.7
CG B:MSE97 4.6 34.4 1.0
O B:CYS15 4.6 28.0 1.0
CE1 B:HIS55 4.7 30.2 1.0
N B:CYS15 4.7 25.0 1.0
CB B:CYS16 4.9 29.6 1.0
CA B:CYS54 4.9 30.6 1.0

Copper binding site 7 out of 8 in 6wis

Go back to Copper Binding Sites List in 6wis
Copper binding site 7 out of 8 in the Copper Resistance Protein Copg- Form 1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Copper Resistance Protein Copg- Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu203

b:31.3
occ:1.00
 N B:CYS16 2.1 24.7 1.0
SG B:CYS13 2.3 29.8 1.0
SG B:CYS16 2.4 27.7 1.0
SG B:CYS15 2.4 30.1 1.0
CU B:CU202 2.8 26.7 1.0
CA B:CYS16 3.0 28.8 1.0
C B:CYS15 3.0 27.2 1.0
CB B:CYS16 3.0 29.6 1.0
CU B:CU201 3.1 26.2 1.0
N B:CYS15 3.1 25.0 1.0
CB B:CYS13 3.2 33.6 1.0
CA B:CYS15 3.3 25.4 1.0
CB B:CYS15 3.3 24.3 1.0
O B:CYS13 3.4 28.1 1.0
C B:CYS13 3.5 27.4 1.0
CA B:CYS13 3.9 30.9 1.0
SG B:CYS54 3.9 27.5 1.0
C B:GLY14 4.0 27.0 1.0
N B:GLY14 4.0 29.5 1.0
O B:CYS15 4.1 28.0 1.0
C B:CYS16 4.3 31.9 1.0
CB B:CYS54 4.4 30.8 1.0
NE2 B:HIS67 4.4 28.3 1.0
CU B:CU204 4.5 33.3 1.0
N B:LYS17 4.6 29.2 1.0
CA B:GLY14 4.6 29.4 1.0
CE1 B:HIS67 4.7 27.7 1.0
O B:GLY14 4.7 24.5 1.0
ND1 B:HIS55 4.9 27.6 1.0

Copper binding site 8 out of 8 in 6wis

Go back to Copper Binding Sites List in 6wis
Copper binding site 8 out of 8 in the Copper Resistance Protein Copg- Form 1


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Copper Resistance Protein Copg- Form 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu204

b:33.3
occ:1.00
 SG B:CYS15 2.3 30.1 1.0
SE B:MSE90 2.4 34.1 0.7
SE B:MSE97 2.5 37.5 0.7
SE A:MSE99 2.6 36.4 0.7
CU B:CU202 3.1 26.7 1.0
CB B:CYS15 3.2 24.3 1.0
CG A:MSE99 3.3 30.6 1.0
CG B:MSE90 3.3 32.8 1.0
CE A:MSE99 3.5 35.8 1.0
CE B:MSE90 3.6 35.2 1.0
CE B:MSE97 3.7 25.8 1.0
CG B:MSE97 3.8 34.4 1.0
CB B:MSE90 3.8 33.8 1.0
CB A:MSE99 3.9 37.5 1.0
NE2 B:HIS67 4.2 28.3 1.0
CU B:CU203 4.5 31.3 1.0
SG B:CYS13 4.6 29.8 1.0
CA B:CYS15 4.7 25.4 1.0
SG B:CYS54 4.7 27.5 1.0
CE1 B:HIS67 4.9 27.7 1.0
CD2 B:HIS67 4.9 25.7 1.0
N B:CYS15 5.0 25.0 1.0

Reference:

A.C.Hausrath, N.A.Ramirez, A.T.Ly, M.M.Mcevoy. The Bacterial Copper-Resistance Protein Copg Contains A Cysteine-Bridged Tetranuclear Copper Cluster J.Biol.Chem. 2020.
ISSN: ESSN 1083-351X
Page generated: Wed Jul 31 07:44:39 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy