Copper in PDB 6wef: Copper-Bound D92H Variant of Campylobacter Jejuni P19
Protein crystallography data
The structure of Copper-Bound D92H Variant of Campylobacter Jejuni P19, PDB code: 6wef
was solved by
A.C.Chan,
M.E.Murphy,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
28.68 /
2.50
|
Space group
|
P 32
|
Cell size a, b, c (Å), α, β, γ (°)
|
132.455,
132.455,
104.585,
90,
90,
120
|
R / Rfree (%)
|
27 /
29.9
|
Copper Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Copper atom in the Copper-Bound D92H Variant of Campylobacter Jejuni P19
(pdb code 6wef). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 12 binding sites of Copper where determined in the
Copper-Bound D92H Variant of Campylobacter Jejuni P19, PDB code: 6wef:
Jump to Copper binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Copper binding site 1 out
of 12 in 6wef
Go back to
Copper Binding Sites List in 6wef
Copper binding site 1 out
of 12 in the Copper-Bound D92H Variant of Campylobacter Jejuni P19
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Copper-Bound D92H Variant of Campylobacter Jejuni P19 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu201
b:34.9
occ:1.00
|
NE2
|
C:HIS42
|
2.0
|
65.7
|
1.0
|
NE2
|
C:HIS95
|
2.3
|
36.7
|
1.0
|
OE2
|
C:GLU44
|
2.3
|
45.9
|
1.0
|
NE2
|
D:HIS132
|
2.3
|
37.9
|
1.0
|
SD
|
C:MET88
|
2.5
|
30.1
|
1.0
|
HA3
|
C:GLY97
|
2.9
|
51.1
|
1.0
|
CE1
|
C:HIS42
|
3.0
|
64.5
|
1.0
|
HE1
|
D:HIS132
|
3.0
|
43.5
|
1.0
|
CD2
|
C:HIS42
|
3.0
|
65.1
|
1.0
|
CE1
|
D:HIS132
|
3.1
|
37.9
|
1.0
|
CD2
|
C:HIS95
|
3.1
|
36.8
|
1.0
|
HD2
|
C:HIS95
|
3.1
|
45.0
|
1.0
|
HE1
|
C:HIS42
|
3.2
|
78.2
|
1.0
|
HD2
|
C:HIS42
|
3.2
|
79.0
|
1.0
|
CE1
|
C:HIS95
|
3.4
|
36.6
|
1.0
|
HG2
|
C:GLU44
|
3.4
|
51.4
|
1.0
|
CD
|
C:GLU44
|
3.4
|
44.6
|
1.0
|
HG3
|
C:MET88
|
3.4
|
38.8
|
1.0
|
CG
|
C:MET88
|
3.5
|
31.6
|
1.0
|
CD2
|
D:HIS132
|
3.5
|
37.9
|
1.0
|
HG2
|
C:MET88
|
3.5
|
38.8
|
1.0
|
CE
|
C:MET88
|
3.6
|
29.1
|
1.0
|
HE1
|
C:HIS95
|
3.6
|
44.7
|
1.0
|
HE1
|
C:MET88
|
3.7
|
35.7
|
1.0
|
HE3
|
C:MET88
|
3.7
|
35.7
|
1.0
|
HD2
|
D:HIS132
|
3.8
|
43.8
|
1.0
|
CA
|
C:GLY97
|
3.9
|
41.9
|
1.0
|
CG
|
C:GLU44
|
3.9
|
42.1
|
1.0
|
ND1
|
C:HIS42
|
4.1
|
65.1
|
1.0
|
CG
|
C:HIS42
|
4.2
|
64.3
|
1.0
|
ND1
|
D:HIS132
|
4.3
|
37.9
|
1.0
|
CG
|
C:HIS95
|
4.3
|
37.1
|
1.0
|
HA2
|
C:GLY97
|
4.4
|
51.1
|
1.0
|
ND1
|
C:HIS95
|
4.4
|
36.6
|
1.0
|
N
|
C:GLY97
|
4.4
|
39.7
|
1.0
|
OE1
|
C:GLU44
|
4.4
|
46.0
|
1.0
|
HE2
|
C:MET88
|
4.4
|
35.7
|
1.0
|
CG
|
D:HIS132
|
4.5
|
37.9
|
1.0
|
HG13
|
C:ILE25
|
4.5
|
54.1
|
1.0
|
HG3
|
C:GLU44
|
4.6
|
51.4
|
1.0
|
C
|
C:GLY97
|
4.6
|
42.7
|
1.0
|
H
|
C:GLY97
|
4.6
|
48.4
|
1.0
|
H
|
C:ALA98
|
4.6
|
50.9
|
1.0
|
N
|
C:ALA98
|
4.8
|
41.7
|
1.0
|
HG21
|
C:ILE25
|
4.8
|
53.7
|
1.0
|
HB3
|
C:GLU44
|
4.8
|
49.9
|
1.0
|
CB
|
C:MET88
|
4.9
|
32.9
|
1.0
|
HD1
|
C:HIS42
|
4.9
|
79.0
|
1.0
|
HB2
|
C:ALA90
|
4.9
|
63.0
|
1.0
|
HB
|
C:ILE25
|
5.0
|
54.5
|
1.0
|
CB
|
C:GLU44
|
5.0
|
40.9
|
1.0
|
HD1
|
D:HIS132
|
5.0
|
43.4
|
1.0
|
HA
|
C:GLU44
|
5.0
|
49.8
|
1.0
|
|
Copper binding site 2 out
of 12 in 6wef
Go back to
Copper Binding Sites List in 6wef
Copper binding site 2 out
of 12 in the Copper-Bound D92H Variant of Campylobacter Jejuni P19
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Copper-Bound D92H Variant of Campylobacter Jejuni P19 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cu201
b:36.6
occ:1.00
|
NE2
|
D:HIS95
|
2.1
|
53.3
|
1.0
|
OE1
|
D:GLU44
|
2.2
|
38.0
|
1.0
|
NE2
|
D:HIS42
|
2.3
|
24.8
|
1.0
|
NE2
|
C:HIS132
|
2.3
|
38.5
|
1.0
|
SD
|
D:MET88
|
2.4
|
25.4
|
1.0
|
HG3
|
D:MET88
|
2.9
|
33.6
|
1.0
|
CD2
|
D:HIS95
|
3.0
|
52.2
|
1.0
|
HA3
|
D:GLY97
|
3.1
|
35.0
|
1.0
|
CG
|
D:MET88
|
3.1
|
27.3
|
1.0
|
HD2
|
D:HIS95
|
3.1
|
63.4
|
1.0
|
CE1
|
D:HIS95
|
3.2
|
52.5
|
1.0
|
CE1
|
C:HIS132
|
3.3
|
38.4
|
1.0
|
CE1
|
D:HIS42
|
3.3
|
24.9
|
1.0
|
HE3
|
D:MET88
|
3.3
|
30.5
|
1.0
|
CD2
|
D:HIS42
|
3.3
|
25.0
|
1.0
|
HG2
|
D:MET88
|
3.3
|
33.6
|
1.0
|
CD2
|
C:HIS132
|
3.4
|
38.5
|
1.0
|
HE1
|
C:HIS132
|
3.4
|
46.9
|
1.0
|
HE1
|
D:HIS95
|
3.4
|
63.8
|
1.0
|
CE
|
D:MET88
|
3.4
|
24.7
|
1.0
|
HE1
|
D:HIS42
|
3.4
|
25.8
|
1.0
|
HD2
|
D:HIS42
|
3.5
|
25.9
|
1.0
|
CD
|
D:GLU44
|
3.5
|
37.5
|
1.0
|
HD2
|
C:HIS132
|
3.5
|
47.0
|
1.0
|
HE1
|
D:MET88
|
3.7
|
30.5
|
1.0
|
HG2
|
D:GLU44
|
4.0
|
43.9
|
1.0
|
CA
|
D:GLY97
|
4.0
|
28.5
|
1.0
|
CG
|
D:HIS95
|
4.2
|
50.5
|
1.0
|
ND1
|
D:HIS95
|
4.2
|
52.0
|
1.0
|
HE2
|
D:MET88
|
4.3
|
30.5
|
1.0
|
CG
|
D:GLU44
|
4.3
|
35.9
|
1.0
|
OE2
|
D:GLU44
|
4.3
|
38.9
|
1.0
|
ND1
|
C:HIS132
|
4.4
|
38.4
|
1.0
|
ND1
|
D:HIS42
|
4.4
|
25.1
|
1.0
|
N
|
D:GLY97
|
4.4
|
28.6
|
1.0
|
CG
|
D:HIS42
|
4.5
|
25.2
|
1.0
|
CG
|
C:HIS132
|
4.5
|
37.7
|
1.0
|
H
|
D:GLY97
|
4.5
|
35.1
|
1.0
|
CB
|
D:MET88
|
4.5
|
28.1
|
1.0
|
HB2
|
D:ALA90
|
4.6
|
76.8
|
1.0
|
HA2
|
D:GLY97
|
4.6
|
35.0
|
1.0
|
HB2
|
D:MET88
|
4.7
|
34.5
|
1.0
|
C
|
D:GLY97
|
4.7
|
28.8
|
1.0
|
HB3
|
D:GLU44
|
4.7
|
43.3
|
1.0
|
H
|
D:ALA98
|
4.9
|
34.9
|
1.0
|
HG13
|
D:ILE25
|
4.9
|
44.8
|
1.0
|
HB3
|
D:MET88
|
4.9
|
34.5
|
1.0
|
HG3
|
D:MET27
|
4.9
|
70.0
|
1.0
|
|
Copper binding site 3 out
of 12 in 6wef
Go back to
Copper Binding Sites List in 6wef
Copper binding site 3 out
of 12 in the Copper-Bound D92H Variant of Campylobacter Jejuni P19
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Copper-Bound D92H Variant of Campylobacter Jejuni P19 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu201
b:34.8
occ:1.00
|
NE2
|
A:HIS95
|
2.0
|
55.0
|
1.0
|
OE2
|
A:GLU44
|
2.2
|
60.5
|
1.0
|
NE2
|
B:HIS132
|
2.2
|
34.6
|
1.0
|
SD
|
A:MET88
|
2.3
|
24.9
|
1.0
|
NE2
|
A:HIS42
|
2.4
|
31.8
|
1.0
|
HG3
|
A:MET88
|
2.9
|
30.9
|
1.0
|
HA3
|
A:GLY97
|
2.9
|
37.8
|
1.0
|
CD2
|
A:HIS95
|
3.0
|
53.9
|
1.0
|
CE1
|
A:HIS95
|
3.0
|
53.3
|
1.0
|
CE1
|
B:HIS132
|
3.1
|
34.8
|
1.0
|
HE1
|
B:HIS132
|
3.1
|
42.6
|
1.0
|
HD2
|
A:HIS95
|
3.2
|
65.4
|
1.0
|
CG
|
A:MET88
|
3.2
|
25.1
|
1.0
|
HE1
|
A:HIS95
|
3.3
|
64.8
|
1.0
|
CE1
|
A:HIS42
|
3.3
|
31.6
|
1.0
|
CD2
|
B:HIS132
|
3.3
|
34.9
|
1.0
|
CD2
|
A:HIS42
|
3.4
|
31.9
|
1.0
|
HE1
|
A:HIS42
|
3.4
|
38.8
|
1.0
|
CD
|
A:GLU44
|
3.4
|
57.2
|
1.0
|
HD2
|
A:HIS42
|
3.5
|
39.1
|
1.0
|
HD2
|
B:HIS132
|
3.6
|
42.7
|
1.0
|
HG2
|
A:MET88
|
3.6
|
30.9
|
1.0
|
HG2
|
A:GLU44
|
3.8
|
63.8
|
1.0
|
CE
|
A:MET88
|
3.8
|
24.9
|
1.0
|
CA
|
A:GLY97
|
3.9
|
30.8
|
1.0
|
HE3
|
A:MET88
|
4.0
|
30.8
|
1.0
|
HE1
|
A:MET88
|
4.1
|
30.8
|
1.0
|
ND1
|
A:HIS95
|
4.1
|
53.6
|
1.0
|
CG
|
A:HIS95
|
4.1
|
52.9
|
1.0
|
CG
|
A:GLU44
|
4.2
|
52.5
|
1.0
|
ND1
|
B:HIS132
|
4.2
|
34.7
|
1.0
|
HA2
|
A:GLY97
|
4.3
|
37.8
|
1.0
|
OE1
|
A:GLU44
|
4.3
|
59.0
|
1.0
|
N
|
A:GLY97
|
4.4
|
30.0
|
1.0
|
CG
|
B:HIS132
|
4.4
|
34.2
|
1.0
|
HB2
|
A:MET88
|
4.4
|
32.3
|
1.0
|
ND1
|
A:HIS42
|
4.4
|
32.2
|
1.0
|
CB
|
A:MET88
|
4.4
|
26.3
|
1.0
|
CG
|
A:HIS42
|
4.5
|
32.7
|
1.0
|
H
|
A:GLY97
|
4.5
|
36.8
|
1.0
|
HE2
|
A:MET88
|
4.6
|
30.8
|
1.0
|
HG21
|
A:ILE25
|
4.6
|
64.3
|
1.0
|
HG13
|
A:ILE25
|
4.6
|
61.1
|
1.0
|
HB2
|
A:ALA90
|
4.7
|
55.8
|
1.0
|
C
|
A:GLY97
|
4.7
|
31.1
|
1.0
|
HB3
|
A:GLU44
|
4.7
|
59.5
|
1.0
|
H
|
A:ALA98
|
4.8
|
36.2
|
1.0
|
HB3
|
A:MET88
|
4.9
|
32.3
|
1.0
|
HG3
|
A:GLU44
|
4.9
|
63.8
|
1.0
|
HD1
|
A:HIS95
|
4.9
|
65.2
|
1.0
|
HD1
|
B:HIS132
|
5.0
|
42.4
|
1.0
|
|
Copper binding site 4 out
of 12 in 6wef
Go back to
Copper Binding Sites List in 6wef
Copper binding site 4 out
of 12 in the Copper-Bound D92H Variant of Campylobacter Jejuni P19
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 4 of Copper-Bound D92H Variant of Campylobacter Jejuni P19 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu201
b:39.6
occ:1.00
|
OE1
|
B:GLU44
|
2.2
|
61.8
|
1.0
|
NE2
|
A:HIS132
|
2.2
|
42.3
|
1.0
|
NE2
|
B:HIS42
|
2.2
|
26.9
|
1.0
|
NE2
|
B:HIS95
|
2.3
|
33.5
|
1.0
|
SD
|
B:MET88
|
2.4
|
35.7
|
1.0
|
HA3
|
B:GLY97
|
2.9
|
61.7
|
1.0
|
CE1
|
A:HIS132
|
3.0
|
42.5
|
1.0
|
HE1
|
A:HIS132
|
3.0
|
51.8
|
1.0
|
CD2
|
B:HIS95
|
3.1
|
33.4
|
1.0
|
HD2
|
B:HIS95
|
3.1
|
40.9
|
1.0
|
CE1
|
B:HIS42
|
3.1
|
28.9
|
1.0
|
HG3
|
B:MET88
|
3.1
|
44.1
|
1.0
|
CG
|
B:MET88
|
3.2
|
36.0
|
1.0
|
HE1
|
B:HIS42
|
3.2
|
35.5
|
1.0
|
CD2
|
B:HIS42
|
3.3
|
27.8
|
1.0
|
HE3
|
B:MET88
|
3.3
|
42.7
|
1.0
|
HG2
|
B:MET88
|
3.3
|
44.1
|
1.0
|
CD
|
B:GLU44
|
3.3
|
57.9
|
1.0
|
CD2
|
A:HIS132
|
3.4
|
42.3
|
1.0
|
HG2
|
B:GLU44
|
3.4
|
65.5
|
1.0
|
CE1
|
B:HIS95
|
3.4
|
33.5
|
1.0
|
CE
|
B:MET88
|
3.4
|
34.9
|
1.0
|
HD2
|
B:HIS42
|
3.5
|
34.2
|
1.0
|
HD2
|
A:HIS132
|
3.6
|
51.6
|
1.0
|
HE1
|
B:HIS95
|
3.7
|
41.0
|
1.0
|
HE1
|
B:MET88
|
3.7
|
42.7
|
1.0
|
CA
|
B:GLY97
|
3.8
|
50.7
|
1.0
|
CG
|
B:GLU44
|
3.9
|
53.9
|
1.0
|
ND1
|
A:HIS132
|
4.2
|
42.2
|
1.0
|
HE2
|
B:MET88
|
4.3
|
42.7
|
1.0
|
ND1
|
B:HIS42
|
4.3
|
26.7
|
1.0
|
CG
|
B:HIS95
|
4.3
|
33.4
|
1.0
|
N
|
B:GLY97
|
4.3
|
47.4
|
1.0
|
HA2
|
B:GLY97
|
4.3
|
61.7
|
1.0
|
OE2
|
B:GLU44
|
4.4
|
60.0
|
1.0
|
CG
|
B:HIS42
|
4.4
|
27.1
|
1.0
|
CG
|
A:HIS132
|
4.4
|
41.4
|
1.0
|
ND1
|
B:HIS95
|
4.4
|
33.5
|
1.0
|
H
|
B:GLY97
|
4.5
|
57.7
|
1.0
|
HG3
|
B:GLU44
|
4.6
|
65.5
|
1.0
|
HB2
|
B:ALA90
|
4.6
|
55.2
|
1.0
|
C
|
B:GLY97
|
4.6
|
51.5
|
1.0
|
CB
|
B:MET88
|
4.7
|
34.0
|
1.0
|
HB3
|
B:GLU44
|
4.7
|
64.3
|
1.0
|
H
|
B:ALA98
|
4.7
|
61.3
|
1.0
|
HB2
|
B:MET88
|
4.9
|
41.6
|
1.0
|
CB
|
B:GLU44
|
4.9
|
52.9
|
1.0
|
N
|
B:ALA98
|
4.9
|
50.4
|
1.0
|
HD1
|
A:HIS132
|
4.9
|
51.4
|
1.0
|
HB3
|
B:MET88
|
5.0
|
41.6
|
1.0
|
|
Copper binding site 5 out
of 12 in 6wef
Go back to
Copper Binding Sites List in 6wef
Copper binding site 5 out
of 12 in the Copper-Bound D92H Variant of Campylobacter Jejuni P19
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 5 of Copper-Bound D92H Variant of Campylobacter Jejuni P19 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cu201
b:32.7
occ:1.00
|
OE2
|
E:GLU44
|
2.1
|
49.5
|
1.0
|
NE2
|
E:HIS42
|
2.1
|
44.6
|
1.0
|
NE2
|
E:HIS95
|
2.3
|
35.4
|
1.0
|
NE2
|
F:HIS132
|
2.3
|
30.3
|
1.0
|
SD
|
E:MET88
|
2.5
|
30.1
|
1.0
|
HA3
|
E:GLY97
|
2.9
|
46.6
|
1.0
|
CD2
|
E:HIS42
|
3.1
|
43.0
|
1.0
|
CD2
|
E:HIS95
|
3.1
|
35.4
|
1.0
|
CE1
|
E:HIS42
|
3.1
|
41.6
|
1.0
|
HD2
|
E:HIS95
|
3.2
|
43.3
|
1.0
|
CE1
|
F:HIS132
|
3.2
|
30.3
|
1.0
|
HD2
|
E:HIS42
|
3.3
|
52.4
|
1.0
|
CD
|
E:GLU44
|
3.3
|
46.9
|
1.0
|
HE1
|
F:HIS132
|
3.3
|
34.3
|
1.0
|
HE1
|
E:HIS42
|
3.3
|
50.8
|
1.0
|
CE1
|
E:HIS95
|
3.4
|
35.5
|
1.0
|
CE
|
E:MET88
|
3.4
|
31.4
|
1.0
|
HE3
|
E:MET88
|
3.4
|
38.5
|
1.0
|
CD2
|
F:HIS132
|
3.4
|
30.4
|
1.0
|
HE1
|
E:MET88
|
3.5
|
38.5
|
1.0
|
HG2
|
E:GLU44
|
3.5
|
51.4
|
1.0
|
HD2
|
F:HIS132
|
3.6
|
34.0
|
1.0
|
HE1
|
E:HIS95
|
3.6
|
43.4
|
1.0
|
HB3
|
E:MET88
|
3.8
|
36.0
|
1.0
|
CG
|
E:MET88
|
3.8
|
29.2
|
1.0
|
CA
|
E:GLY97
|
3.8
|
38.1
|
1.0
|
HG2
|
E:MET88
|
3.9
|
35.9
|
1.0
|
CG
|
E:GLU44
|
4.0
|
42.1
|
1.0
|
ND1
|
E:HIS42
|
4.2
|
42.9
|
1.0
|
OE1
|
E:GLU44
|
4.2
|
49.5
|
1.0
|
CG
|
E:HIS42
|
4.3
|
42.8
|
1.0
|
HE2
|
E:MET88
|
4.3
|
38.5
|
1.0
|
HA2
|
E:GLY97
|
4.3
|
46.6
|
1.0
|
CG
|
E:HIS95
|
4.3
|
35.5
|
1.0
|
HG13
|
E:ILE25
|
4.3
|
48.2
|
1.0
|
CB
|
E:MET88
|
4.4
|
29.3
|
1.0
|
ND1
|
F:HIS132
|
4.4
|
30.4
|
1.0
|
N
|
E:GLY97
|
4.4
|
38.8
|
1.0
|
ND1
|
E:HIS95
|
4.4
|
35.7
|
1.0
|
HG21
|
E:ILE25
|
4.4
|
49.9
|
1.0
|
CG
|
F:HIS132
|
4.5
|
30.4
|
1.0
|
H
|
E:GLY97
|
4.6
|
47.4
|
1.0
|
HG3
|
E:MET88
|
4.6
|
35.9
|
1.0
|
HG3
|
E:GLU44
|
4.6
|
51.4
|
1.0
|
C
|
E:GLY97
|
4.6
|
38.8
|
1.0
|
H
|
E:ALA98
|
4.7
|
43.5
|
1.0
|
HB2
|
E:MET88
|
4.7
|
36.0
|
1.0
|
HB2
|
E:ALA90
|
4.7
|
50.9
|
1.0
|
HB3
|
E:GLU44
|
4.9
|
48.3
|
1.0
|
HG3
|
E:MET27
|
4.9
|
59.0
|
1.0
|
N
|
E:ALA98
|
4.9
|
35.6
|
1.0
|
O
|
E:HOH308
|
5.0
|
44.7
|
1.0
|
HB
|
E:ILE25
|
5.0
|
48.1
|
1.0
|
|
Copper binding site 6 out
of 12 in 6wef
Go back to
Copper Binding Sites List in 6wef
Copper binding site 6 out
of 12 in the Copper-Bound D92H Variant of Campylobacter Jejuni P19
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 6 of Copper-Bound D92H Variant of Campylobacter Jejuni P19 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cu201
b:57.1
occ:0.90
|
OE1
|
F:GLU44
|
2.1
|
76.2
|
1.0
|
NE2
|
E:HIS132
|
2.1
|
72.8
|
1.0
|
NE2
|
F:HIS95
|
2.2
|
37.0
|
1.0
|
NE2
|
F:HIS42
|
2.3
|
29.4
|
1.0
|
SD
|
F:MET88
|
2.3
|
36.0
|
1.0
|
HG3
|
F:MET88
|
2.9
|
41.2
|
1.0
|
CE1
|
E:HIS132
|
3.0
|
70.7
|
1.0
|
HA3
|
F:GLY97
|
3.0
|
37.2
|
1.0
|
HE1
|
E:HIS132
|
3.0
|
85.7
|
1.0
|
CG
|
F:MET88
|
3.1
|
33.7
|
1.0
|
CD2
|
F:HIS95
|
3.1
|
37.0
|
1.0
|
HD2
|
F:HIS95
|
3.2
|
45.3
|
1.0
|
HG2
|
F:MET88
|
3.2
|
41.2
|
1.0
|
CE1
|
F:HIS42
|
3.2
|
29.4
|
1.0
|
CD2
|
E:HIS132
|
3.2
|
72.2
|
1.0
|
CE1
|
F:HIS95
|
3.3
|
37.4
|
1.0
|
CD
|
F:GLU44
|
3.3
|
71.3
|
1.0
|
HE1
|
F:HIS42
|
3.3
|
36.0
|
1.0
|
CD2
|
F:HIS42
|
3.4
|
29.7
|
1.0
|
HE3
|
F:MET88
|
3.5
|
45.7
|
1.0
|
HE1
|
F:HIS95
|
3.5
|
45.6
|
1.0
|
HD2
|
E:HIS132
|
3.5
|
87.5
|
1.0
|
CE
|
F:MET88
|
3.5
|
37.4
|
1.0
|
HD2
|
F:HIS42
|
3.6
|
36.5
|
1.0
|
HE1
|
F:MET88
|
3.9
|
45.7
|
1.0
|
HG2
|
F:GLU44
|
4.0
|
82.0
|
1.0
|
CA
|
F:GLY97
|
4.0
|
30.3
|
1.0
|
ND1
|
E:HIS132
|
4.1
|
72.1
|
1.0
|
OE2
|
F:GLU44
|
4.2
|
71.6
|
1.0
|
CG
|
F:GLU44
|
4.3
|
67.7
|
1.0
|
CG
|
F:HIS95
|
4.3
|
36.5
|
1.0
|
CG
|
E:HIS132
|
4.3
|
73.1
|
1.0
|
HE2
|
F:MET88
|
4.3
|
45.7
|
1.0
|
ND1
|
F:HIS95
|
4.3
|
37.3
|
1.0
|
ND1
|
F:HIS42
|
4.4
|
29.6
|
1.0
|
N
|
F:GLY97
|
4.4
|
30.1
|
1.0
|
HA2
|
F:GLY97
|
4.5
|
37.2
|
1.0
|
CG
|
F:HIS42
|
4.5
|
30.3
|
1.0
|
CB
|
F:MET88
|
4.5
|
33.8
|
1.0
|
H
|
F:GLY97
|
4.6
|
36.9
|
1.0
|
HB2
|
F:ALA90
|
4.6
|
47.7
|
1.0
|
HB2
|
F:MET88
|
4.7
|
41.4
|
1.0
|
C
|
F:GLY97
|
4.8
|
29.7
|
1.0
|
HB3
|
F:GLU44
|
4.8
|
71.8
|
1.0
|
HB3
|
F:MET88
|
4.8
|
41.4
|
1.0
|
HD1
|
E:HIS132
|
4.9
|
87.3
|
1.0
|
HG3
|
F:MET27
|
4.9
|
50.8
|
1.0
|
H
|
F:ALA98
|
4.9
|
36.3
|
1.0
|
HG3
|
F:GLU44
|
5.0
|
82.0
|
1.0
|
HG13
|
F:ILE25
|
5.0
|
43.1
|
1.0
|
|
Copper binding site 7 out
of 12 in 6wef
Go back to
Copper Binding Sites List in 6wef
Copper binding site 7 out
of 12 in the Copper-Bound D92H Variant of Campylobacter Jejuni P19
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 7 of Copper-Bound D92H Variant of Campylobacter Jejuni P19 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Cu201
b:66.8
occ:1.00
|
HE2
|
H:HIS132
|
1.6
|
53.6
|
1.0
|
NE2
|
G:HIS42
|
2.0
|
89.2
|
1.0
|
NE2
|
G:HIS95
|
2.0
|
79.2
|
1.0
|
NE2
|
H:HIS132
|
2.4
|
44.0
|
1.0
|
OE2
|
G:GLU44
|
2.5
|
45.1
|
1.0
|
SD
|
G:MET88
|
2.6
|
30.9
|
1.0
|
CD2
|
G:HIS42
|
2.9
|
92.5
|
1.0
|
CD2
|
G:HIS95
|
2.9
|
77.9
|
1.0
|
HD2
|
G:HIS42
|
3.0
|
111.8
|
1.0
|
HE1
|
H:HIS132
|
3.0
|
53.9
|
1.0
|
HD2
|
G:HIS95
|
3.0
|
94.3
|
1.0
|
CE1
|
H:HIS132
|
3.1
|
44.3
|
1.0
|
HG2
|
G:GLU44
|
3.1
|
53.9
|
1.0
|
CE1
|
G:HIS95
|
3.1
|
77.7
|
1.0
|
CE1
|
G:HIS42
|
3.1
|
91.4
|
1.0
|
CD
|
G:GLU44
|
3.4
|
44.6
|
1.0
|
HE1
|
G:HIS95
|
3.4
|
94.0
|
1.0
|
HE1
|
G:HIS42
|
3.4
|
110.5
|
1.0
|
HG3
|
G:MET88
|
3.4
|
38.5
|
1.0
|
HA3
|
G:GLY97
|
3.4
|
51.1
|
1.0
|
HE3
|
G:MET88
|
3.5
|
38.8
|
1.0
|
CD2
|
H:HIS132
|
3.6
|
43.9
|
1.0
|
CG
|
G:MET88
|
3.6
|
31.4
|
1.0
|
CE
|
G:MET88
|
3.7
|
31.6
|
1.0
|
CG
|
G:GLU44
|
3.7
|
44.2
|
1.0
|
HD2
|
H:HIS132
|
3.9
|
53.5
|
1.0
|
HG2
|
G:MET88
|
3.9
|
38.5
|
1.0
|
CG
|
G:HIS42
|
4.1
|
95.1
|
1.0
|
CG
|
G:HIS95
|
4.1
|
76.2
|
1.0
|
HE1
|
G:MET88
|
4.1
|
38.8
|
1.0
|
ND1
|
G:HIS42
|
4.1
|
92.5
|
1.0
|
ND1
|
G:HIS95
|
4.1
|
78.1
|
1.0
|
HG3
|
G:GLU44
|
4.3
|
53.9
|
1.0
|
ND1
|
H:HIS132
|
4.3
|
44.2
|
1.0
|
CA
|
G:GLY97
|
4.4
|
41.9
|
1.0
|
OE1
|
G:GLU44
|
4.4
|
45.7
|
1.0
|
HE2
|
G:MET88
|
4.4
|
38.8
|
1.0
|
CG
|
H:HIS132
|
4.6
|
43.6
|
1.0
|
HB2
|
G:ALA90
|
4.7
|
47.7
|
1.0
|
HB3
|
G:GLU44
|
4.7
|
55.0
|
1.0
|
N
|
G:GLY97
|
4.8
|
43.8
|
1.0
|
HA2
|
G:GLY97
|
4.8
|
51.1
|
1.0
|
CB
|
G:GLU44
|
4.8
|
45.1
|
1.0
|
CB
|
G:MET88
|
4.9
|
33.5
|
1.0
|
HB2
|
G:MET88
|
4.9
|
41.0
|
1.0
|
HD1
|
G:HIS42
|
4.9
|
111.8
|
1.0
|
HD1
|
G:HIS95
|
4.9
|
94.5
|
1.0
|
HG13
|
G:ILE25
|
5.0
|
68.6
|
1.0
|
HD1
|
H:HIS132
|
5.0
|
53.8
|
1.0
|
|
Copper binding site 8 out
of 12 in 6wef
Go back to
Copper Binding Sites List in 6wef
Copper binding site 8 out
of 12 in the Copper-Bound D92H Variant of Campylobacter Jejuni P19
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 8 of Copper-Bound D92H Variant of Campylobacter Jejuni P19 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Cu201
b:37.6
occ:1.00
|
NE2
|
H:HIS42
|
2.1
|
59.8
|
1.0
|
NE2
|
H:HIS95
|
2.3
|
31.1
|
1.0
|
NE2
|
G:HIS132
|
2.3
|
34.3
|
1.0
|
SD
|
H:MET88
|
2.7
|
21.7
|
1.0
|
HE1
|
G:HIS132
|
2.9
|
41.1
|
1.0
|
CE1
|
G:HIS132
|
2.9
|
33.5
|
1.0
|
CD2
|
H:HIS42
|
3.0
|
58.5
|
1.0
|
HD2
|
H:HIS42
|
3.0
|
71.0
|
1.0
|
HA3
|
H:GLY97
|
3.1
|
38.0
|
1.0
|
HG2
|
H:GLU44
|
3.1
|
62.0
|
1.0
|
CE1
|
H:HIS42
|
3.2
|
58.3
|
1.0
|
CD2
|
H:HIS95
|
3.2
|
30.9
|
1.0
|
OE1
|
H:GLU44
|
3.3
|
57.3
|
1.0
|
CE1
|
H:HIS95
|
3.3
|
30.9
|
1.0
|
HD2
|
H:HIS95
|
3.3
|
37.9
|
1.0
|
HG3
|
H:GLU44
|
3.4
|
62.0
|
1.0
|
HG3
|
H:MET88
|
3.4
|
24.0
|
1.0
|
HE1
|
H:HIS42
|
3.4
|
70.8
|
1.0
|
HE1
|
H:HIS95
|
3.5
|
37.9
|
1.0
|
CD2
|
G:HIS132
|
3.5
|
34.5
|
1.0
|
CD
|
H:GLU44
|
3.5
|
56.7
|
1.0
|
CG
|
H:GLU44
|
3.5
|
51.0
|
1.0
|
CG
|
H:MET88
|
3.6
|
21.7
|
1.0
|
HD2
|
G:HIS132
|
3.8
|
42.2
|
1.0
|
HG2
|
H:MET88
|
3.8
|
24.0
|
1.0
|
CA
|
H:GLY97
|
4.0
|
30.9
|
1.0
|
CE
|
H:MET88
|
4.1
|
21.7
|
1.0
|
CG
|
H:HIS42
|
4.2
|
57.4
|
1.0
|
ND1
|
G:HIS132
|
4.2
|
34.0
|
1.0
|
HE1
|
H:MET88
|
4.2
|
24.9
|
1.0
|
HE3
|
H:MET88
|
4.2
|
24.9
|
1.0
|
ND1
|
H:HIS42
|
4.2
|
58.5
|
1.0
|
OE2
|
H:GLU44
|
4.3
|
58.7
|
1.0
|
HG13
|
H:ILE25
|
4.4
|
39.5
|
1.0
|
ND1
|
H:HIS95
|
4.4
|
31.1
|
1.0
|
CG
|
H:HIS95
|
4.4
|
30.7
|
1.0
|
CG
|
G:HIS132
|
4.5
|
34.3
|
1.0
|
HA2
|
H:GLY97
|
4.5
|
38.0
|
1.0
|
HG21
|
H:ILE25
|
4.6
|
37.9
|
1.0
|
N
|
H:GLY97
|
4.6
|
31.2
|
1.0
|
H
|
H:ALA98
|
4.7
|
39.3
|
1.0
|
HB2
|
H:ALA90
|
4.8
|
47.0
|
1.0
|
C
|
H:GLY97
|
4.8
|
31.4
|
1.0
|
HB
|
H:ILE25
|
4.9
|
40.5
|
1.0
|
HE2
|
H:MET88
|
4.9
|
24.9
|
1.0
|
HD1
|
G:HIS132
|
4.9
|
41.7
|
1.0
|
H
|
H:GLY97
|
4.9
|
38.2
|
1.0
|
N
|
H:ALA98
|
5.0
|
32.1
|
1.0
|
O
|
H:HOH324
|
5.0
|
21.8
|
1.0
|
|
Copper binding site 9 out
of 12 in 6wef
Go back to
Copper Binding Sites List in 6wef
Copper binding site 9 out
of 12 in the Copper-Bound D92H Variant of Campylobacter Jejuni P19
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 9 of Copper-Bound D92H Variant of Campylobacter Jejuni P19 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Cu201
b:82.8
occ:1.00
|
NE2
|
I:HIS95
|
2.0
|
95.6
|
1.0
|
NE2
|
I:HIS42
|
2.0
|
101.2
|
1.0
|
NE2
|
J:HIS132
|
2.2
|
101.4
|
1.0
|
SD
|
I:MET88
|
2.6
|
36.5
|
1.0
|
HE1
|
J:HIS132
|
2.7
|
119.5
|
1.0
|
CE1
|
J:HIS132
|
2.8
|
98.9
|
1.0
|
CE1
|
I:HIS95
|
3.0
|
93.2
|
1.0
|
CD2
|
I:HIS42
|
3.0
|
98.9
|
1.0
|
CD2
|
I:HIS95
|
3.0
|
93.8
|
1.0
|
HG2
|
I:GLU44
|
3.0
|
51.6
|
1.0
|
CE1
|
I:HIS42
|
3.0
|
98.1
|
1.0
|
HD2
|
I:HIS42
|
3.1
|
119.5
|
1.0
|
HE1
|
I:HIS95
|
3.1
|
112.6
|
1.0
|
OE2
|
I:GLU44
|
3.2
|
47.5
|
1.0
|
HD2
|
I:HIS95
|
3.2
|
113.4
|
1.0
|
HE1
|
I:HIS42
|
3.2
|
118.5
|
1.0
|
HG3
|
I:MET88
|
3.3
|
45.4
|
1.0
|
CD2
|
J:HIS132
|
3.4
|
100.4
|
1.0
|
HE3
|
I:MET88
|
3.5
|
42.3
|
1.0
|
CD
|
I:GLU44
|
3.5
|
45.6
|
1.0
|
CG
|
I:MET88
|
3.5
|
37.2
|
1.0
|
HA3
|
I:GLY97
|
3.6
|
53.4
|
1.0
|
CE
|
I:MET88
|
3.7
|
34.6
|
1.0
|
CG
|
I:GLU44
|
3.7
|
42.3
|
1.0
|
HD2
|
J:HIS132
|
3.8
|
121.3
|
1.0
|
HG2
|
I:MET88
|
3.9
|
45.4
|
1.0
|
ND1
|
J:HIS132
|
4.0
|
100.6
|
1.0
|
ND1
|
I:HIS95
|
4.1
|
94.0
|
1.0
|
HE1
|
I:MET88
|
4.1
|
42.3
|
1.0
|
ND1
|
I:HIS42
|
4.1
|
99.0
|
1.0
|
CG
|
I:HIS42
|
4.1
|
95.5
|
1.0
|
CG
|
I:HIS95
|
4.1
|
90.0
|
1.0
|
HG3
|
I:GLU44
|
4.2
|
51.6
|
1.0
|
OE1
|
I:GLU44
|
4.3
|
47.4
|
1.0
|
CG
|
J:HIS132
|
4.3
|
97.1
|
1.0
|
HE2
|
I:MET88
|
4.4
|
42.3
|
1.0
|
CA
|
I:GLY97
|
4.5
|
43.8
|
1.0
|
HB2
|
I:ALA90
|
4.7
|
47.1
|
1.0
|
HD1
|
J:HIS132
|
4.7
|
121.6
|
1.0
|
HG21
|
I:ILE25
|
4.8
|
58.1
|
1.0
|
HG13
|
I:ILE25
|
4.8
|
56.6
|
1.0
|
HB3
|
I:GLU44
|
4.8
|
49.4
|
1.0
|
HB2
|
I:MET88
|
4.8
|
44.4
|
1.0
|
HD1
|
I:HIS95
|
4.9
|
113.7
|
1.0
|
CB
|
I:MET88
|
4.9
|
36.3
|
1.0
|
N
|
I:GLY97
|
4.9
|
45.8
|
1.0
|
HD1
|
I:HIS42
|
4.9
|
119.6
|
1.0
|
CB
|
I:GLU44
|
4.9
|
40.5
|
1.0
|
|
Copper binding site 10 out
of 12 in 6wef
Go back to
Copper Binding Sites List in 6wef
Copper binding site 10 out
of 12 in the Copper-Bound D92H Variant of Campylobacter Jejuni P19
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 10 of Copper-Bound D92H Variant of Campylobacter Jejuni P19 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Cu201
b:70.5
occ:1.00
|
NE2
|
J:HIS42
|
2.0
|
78.7
|
1.0
|
NE2
|
J:HIS95
|
2.1
|
86.9
|
1.0
|
NE2
|
I:HIS132
|
2.1
|
90.9
|
1.0
|
HE1
|
I:HIS132
|
2.3
|
106.2
|
1.0
|
CE1
|
I:HIS132
|
2.5
|
87.8
|
1.0
|
CD2
|
J:HIS42
|
2.7
|
79.5
|
1.0
|
HD2
|
J:HIS42
|
2.8
|
96.3
|
1.0
|
CE1
|
J:HIS95
|
2.9
|
84.7
|
1.0
|
SD
|
J:MET88
|
2.9
|
25.3
|
1.0
|
HE1
|
J:HIS95
|
3.0
|
102.4
|
1.0
|
HG2
|
J:GLU44
|
3.1
|
50.6
|
1.0
|
CE1
|
J:HIS42
|
3.1
|
78.8
|
1.0
|
CD2
|
J:HIS95
|
3.2
|
84.7
|
1.0
|
HA3
|
J:GLY97
|
3.4
|
52.1
|
1.0
|
CD2
|
I:HIS132
|
3.4
|
89.3
|
1.0
|
HD2
|
J:HIS95
|
3.4
|
102.4
|
1.0
|
HE1
|
J:HIS42
|
3.5
|
95.4
|
1.0
|
HG3
|
J:MET88
|
3.5
|
32.4
|
1.0
|
OE1
|
J:GLU44
|
3.6
|
46.2
|
1.0
|
CG
|
J:GLU44
|
3.7
|
41.5
|
1.0
|
ND1
|
I:HIS132
|
3.8
|
89.1
|
1.0
|
CD
|
J:GLU44
|
3.8
|
44.6
|
1.0
|
CG
|
J:MET88
|
3.8
|
26.3
|
1.0
|
HG12
|
J:ILE25
|
3.8
|
45.5
|
1.0
|
HG3
|
J:GLU44
|
3.8
|
50.6
|
1.0
|
HD2
|
I:HIS132
|
3.9
|
108.0
|
1.0
|
CG
|
J:HIS42
|
3.9
|
78.8
|
1.0
|
ND1
|
J:HIS42
|
4.1
|
79.4
|
1.0
|
ND1
|
J:HIS95
|
4.1
|
84.7
|
1.0
|
HG2
|
J:MET88
|
4.1
|
32.4
|
1.0
|
CG
|
I:HIS132
|
4.2
|
84.5
|
1.0
|
CG
|
J:HIS95
|
4.2
|
81.7
|
1.0
|
HD11
|
J:ILE25
|
4.3
|
43.8
|
1.0
|
CE
|
J:MET88
|
4.3
|
25.3
|
1.0
|
CA
|
J:GLY97
|
4.3
|
42.7
|
1.0
|
HD1
|
I:HIS132
|
4.4
|
107.7
|
1.0
|
HE3
|
J:MET88
|
4.4
|
31.2
|
1.0
|
HE1
|
J:MET88
|
4.4
|
31.2
|
1.0
|
HB2
|
J:ALA90
|
4.5
|
50.8
|
1.0
|
HD13
|
J:ILE25
|
4.5
|
43.8
|
1.0
|
OE2
|
J:GLU44
|
4.6
|
46.9
|
1.0
|
HG21
|
J:ILE25
|
4.6
|
50.2
|
1.0
|
HA2
|
J:GLY97
|
4.7
|
52.1
|
1.0
|
CG1
|
J:ILE25
|
4.7
|
37.2
|
1.0
|
CD1
|
J:ILE25
|
4.7
|
35.8
|
1.0
|
HD1
|
J:HIS95
|
4.8
|
102.5
|
1.0
|
HD1
|
J:HIS42
|
4.9
|
96.1
|
1.0
|
N
|
J:GLY97
|
4.9
|
44.8
|
1.0
|
H
|
J:ALA98
|
5.0
|
47.5
|
1.0
|
|
Reference:
A.C.K.Chan,
H.Lin,
D.Koch,
G.Grass,
D.H.Nies,
M.E.P.Murphy.
A Copper Site Is Required For Iron Transport By the Periplasmic Proteins P19 and Fetp. Metallomics V. 12 1530 2020.
ISSN: ESSN 1756-591X
PubMed: 32780051
DOI: 10.1039/D0MT00130A
Page generated: Wed Jul 31 07:44:49 2024
|