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Copper in PDB 6wed: Copper-Bound E44Q Variant of Campylobacter Jejuni P19

Protein crystallography data

The structure of Copper-Bound E44Q Variant of Campylobacter Jejuni P19, PDB code: 6wed was solved by A.C.Chan, M.E.Murphy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.51 / 1.90
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 55.347, 73.336, 78.957, 90, 90, 90
R / Rfree (%) 17.4 / 22.2

Copper Binding Sites:

The binding sites of Copper atom in the Copper-Bound E44Q Variant of Campylobacter Jejuni P19 (pdb code 6wed). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Copper-Bound E44Q Variant of Campylobacter Jejuni P19, PDB code: 6wed:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 6wed

Go back to Copper Binding Sites List in 6wed
Copper binding site 1 out of 2 in the Copper-Bound E44Q Variant of Campylobacter Jejuni P19


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Copper-Bound E44Q Variant of Campylobacter Jejuni P19 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu201

b:19.0
occ:0.80
NE2 A:HIS42 2.0 20.0 1.0
NE2 A:HIS95 2.1 22.9 1.0
NE2 B:HIS132 2.2 20.7 1.0
SD A:MET88 2.2 21.3 1.0
CE1 A:HIS42 2.9 21.9 1.0
HG3 A:MET88 3.0 26.5 1.0
CE1 B:HIS132 3.0 20.6 1.0
CD2 A:HIS42 3.0 19.3 1.0
CE1 A:HIS95 3.0 24.9 1.0
HE1 B:HIS132 3.1 24.7 1.0
CG A:MET88 3.1 22.1 1.0
HE1 A:HIS42 3.1 26.3 1.0
HE1 A:HIS95 3.2 29.8 1.0
CD2 A:HIS95 3.2 19.2 1.0
HD2 A:HIS42 3.2 23.2 1.0
CD2 B:HIS132 3.3 21.6 1.0
HG2 A:MET88 3.3 26.5 1.0
HA3 A:GLY97 3.3 20.6 1.0
HE3 A:MET88 3.4 26.6 1.0
CE A:MET88 3.4 22.2 1.0
HD2 A:HIS95 3.4 23.1 1.0
HD2 B:HIS132 3.6 25.9 1.0
HG12 A:ILE25 3.6 23.9 1.0
HD11 A:ILE25 3.6 26.1 1.0
HE1 A:MET88 3.6 26.6 1.0
ND1 A:HIS42 4.0 18.7 1.0
CG A:HIS42 4.1 17.1 1.0
HE2 A:MET88 4.2 26.6 1.0
ND1 B:HIS132 4.2 22.3 1.0
ND1 A:HIS95 4.2 24.4 1.0
CA A:GLY97 4.3 17.2 1.0
CG A:HIS95 4.3 23.4 1.0
CG1 A:ILE25 4.4 19.9 1.0
CG B:HIS132 4.4 23.4 1.0
CD1 A:ILE25 4.4 21.8 1.0
CB A:MET88 4.6 20.0 1.0
OE1 A:GLN44 4.6 27.5 1.0
HB2 A:ALA90 4.7 32.0 1.0
HB2 A:MET88 4.7 24.0 1.0
HG13 A:ILE25 4.7 23.9 1.0
HD13 A:ILE25 4.7 26.1 1.0
N A:GLY97 4.8 19.5 1.0
HD1 A:HIS42 4.8 22.4 1.0
C A:GLY97 4.8 17.2 1.0
HA2 A:GLY97 4.9 20.6 1.0
HB3 A:MET88 4.9 24.0 1.0
HD1 B:HIS132 4.9 26.7 1.0
HD1 A:HIS95 5.0 29.2 1.0
H A:GLY97 5.0 23.4 1.0

Copper binding site 2 out of 2 in 6wed

Go back to Copper Binding Sites List in 6wed
Copper binding site 2 out of 2 in the Copper-Bound E44Q Variant of Campylobacter Jejuni P19


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Copper-Bound E44Q Variant of Campylobacter Jejuni P19 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu201

b:18.7
occ:0.70
NE2 B:HIS95 2.1 25.0 1.0
NE2 A:HIS132 2.1 24.6 1.0
NE2 B:HIS42 2.1 24.7 1.0
SD B:MET88 2.3 23.3 1.0
CE1 B:HIS95 2.9 22.5 1.0
CE1 A:HIS132 3.0 27.3 1.0
HG3 B:MET88 3.0 24.1 1.0
CE1 B:HIS42 3.0 27.4 1.0
HE1 B:HIS95 3.0 27.0 1.0
CD2 B:HIS42 3.1 26.5 1.0
HE1 A:HIS132 3.1 32.8 1.0
CG B:MET88 3.1 20.1 1.0
CD2 A:HIS132 3.2 27.0 1.0
CD2 B:HIS95 3.2 21.0 1.0
HE1 B:HIS42 3.2 32.9 1.0
HD2 B:HIS42 3.3 31.8 1.0
HG2 B:MET88 3.3 24.1 1.0
HD2 A:HIS132 3.4 32.4 1.0
HD2 B:HIS95 3.4 25.2 1.0
CE B:MET88 3.5 27.5 1.0
HE3 B:MET88 3.5 33.0 1.0
HA3 B:GLY97 3.5 27.4 1.0
HD11 B:ILE25 3.5 52.4 1.0
HG12 B:ILE25 3.6 48.4 1.0
HE1 B:MET88 3.7 33.0 1.0
HD13 B:ILE25 4.0 52.4 1.0
ND1 B:HIS95 4.1 21.9 1.0
ND1 B:HIS42 4.1 26.2 1.0
CD1 B:ILE25 4.1 43.6 1.0
ND1 A:HIS132 4.1 25.4 1.0
CG B:HIS42 4.2 26.2 1.0
CG B:HIS95 4.3 20.9 1.0
CG A:HIS132 4.3 27.1 1.0
HE2 B:MET88 4.3 33.0 1.0
CG1 B:ILE25 4.4 40.3 1.0
CA B:GLY97 4.4 22.9 1.0
CB B:MET88 4.6 18.4 1.0
OE1 B:GLN44 4.6 26.8 1.0
N B:GLY97 4.7 23.5 1.0
HB2 B:MET88 4.8 22.1 1.0
H B:GLY97 4.8 28.2 1.0
O B:HOH311 4.8 36.2 1.0
HB2 B:ALA90 4.8 27.8 1.0
HD1 B:HIS95 4.8 26.2 1.0
HD1 B:HIS42 4.9 31.5 1.0
HG13 B:ILE25 4.9 48.4 1.0
HD1 A:HIS132 4.9 30.5 1.0
C B:GLY97 4.9 22.8 1.0
HG21 B:ILE25 4.9 42.8 1.0
HB3 B:MET88 4.9 22.1 1.0

Reference:

A.C.K.Chan, H.Lin, D.Koch, G.Grass, D.H.Nies, M.E.P.Murphy. A Copper Site Is Required For Iron Transport By the Periplasmic Proteins P19 and Fetp. Metallomics V. 12 1530 2020.
ISSN: ESSN 1756-591X
PubMed: 32780051
DOI: 10.1039/D0MT00130A
Page generated: Wed Mar 3 13:07:56 2021

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