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Copper in PDB 6u2z: Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with the Hydrolyzed Moxalactam and Two Copper Ions

Enzymatic activity of Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with the Hydrolyzed Moxalactam and Two Copper Ions

All present enzymatic activity of Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with the Hydrolyzed Moxalactam and Two Copper Ions:
3.5.2.6;

Protein crystallography data

The structure of Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with the Hydrolyzed Moxalactam and Two Copper Ions, PDB code: 6u2z was solved by Y.Kim, N.Maltseva, M.Endres, A.Joachimiak, Center For Structural Genomicsof Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.34 / 2.38
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 104.234, 104.234, 98.793, 90.00, 90.00, 120.00
R / Rfree (%) 18.6 / 22.9

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with the Hydrolyzed Moxalactam and Two Copper Ions (pdb code 6u2z). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with the Hydrolyzed Moxalactam and Two Copper Ions, PDB code: 6u2z:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 6u2z

Go back to Copper Binding Sites List in 6u2z
Copper binding site 1 out of 2 in the Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with the Hydrolyzed Moxalactam and Two Copper Ions


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with the Hydrolyzed Moxalactam and Two Copper Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu301

b:38.7
occ:0.90
 NE2 A:HIS110 2.1 41.3 1.0
O A:HOH416 2.2 53.8 1.0
NE2 A:HIS246 2.2 38.0 1.0
OD2 A:ASP109 2.3 33.7 1.0
O82 A:3P7300 2.3 45.2 1.0
N8 A:3P7300 2.6 48.2 1.0
CD2 A:HIS110 3.0 38.7 1.0
CD2 A:HIS246 3.0 37.2 1.0
CE1 A:HIS110 3.1 38.8 1.0
C8 A:3P7300 3.1 46.5 1.0
CG A:ASP109 3.2 33.4 1.0
C7 A:3P7300 3.2 48.2 1.0
CE1 A:HIS246 3.3 38.3 1.0
OD1 A:ASP109 3.4 33.5 1.0
CU A:CU302 3.6 35.8 1.0
C3 A:3P7300 3.7 51.6 1.0
O61 A:3P7300 4.0 54.9 1.0
CG A:HIS110 4.1 37.2 1.0
ND1 A:HIS110 4.1 37.4 1.0
O1 A:3P7300 4.1 56.1 1.0
CG A:HIS246 4.2 36.4 1.0
O81 A:3P7300 4.3 43.8 1.0
NE2 A:HIS105 4.3 45.9 1.0
ND1 A:HIS246 4.3 38.7 1.0
C2 A:3P7300 4.3 54.8 1.0
CE1 A:HIS105 4.4 44.1 1.0
OG A:SER206 4.6 36.9 1.0
CB A:ASP109 4.6 31.1 1.0
C6 A:3P7300 4.6 50.0 1.0
NE2 A:HIS181 4.6 38.4 1.0
C1 A:3P7300 4.7 55.5 1.0
O4 A:3P7300 4.9 51.8 1.0

Copper binding site 2 out of 2 in 6u2z

Go back to Copper Binding Sites List in 6u2z
Copper binding site 2 out of 2 in the Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with the Hydrolyzed Moxalactam and Two Copper Ions


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with the Hydrolyzed Moxalactam and Two Copper Ions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu302

b:35.8
occ:1.00
 NE2 A:HIS105 2.0 45.9 1.0
O A:HOH416 2.1 53.8 1.0
ND1 A:HIS107 2.2 46.6 1.0
NE2 A:HIS181 2.2 38.4 1.0
CD2 A:HIS181 2.8 34.6 1.0
O1 A:3P7300 2.9 56.1 1.0
CD2 A:HIS105 3.0 43.1 1.0
CE1 A:HIS105 3.0 44.1 1.0
CE1 A:HIS107 3.2 44.9 1.0
CG A:HIS107 3.2 42.4 1.0
CE1 A:HIS181 3.4 35.2 1.0
O82 A:3P7300 3.4 45.2 1.0
CB A:HIS107 3.4 35.3 1.0
CU A:CU301 3.6 38.7 0.9
CD2 A:HIS110 4.0 38.7 1.0
ND1 A:HIS105 4.0 43.7 1.0
CG A:HIS105 4.1 42.0 1.0
C1 A:3P7300 4.1 55.5 1.0
CG A:HIS181 4.1 34.0 1.0
N8 A:3P7300 4.2 48.2 1.0
NE2 A:HIS107 4.3 44.5 1.0
OD1 A:ASP109 4.3 33.5 1.0
CD2 A:HIS107 4.3 44.6 1.0
O61 A:3P7300 4.3 54.9 1.0
C8 A:3P7300 4.3 46.5 1.0
ND1 A:HIS181 4.3 34.9 1.0
NE2 A:HIS110 4.3 41.3 1.0
C62 A:3P7300 4.5 53.6 1.0
C7 A:3P7300 4.7 48.2 1.0
C2 A:3P7300 4.7 54.8 1.0
CA A:HIS107 4.9 32.1 1.0
CG2 A:THR182 4.9 22.5 1.0

Reference:

Y.Kim, N.Maltseva, M.Endres, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with the Hydrolyzed Moxalactam and Two Copper Ions To Be Published.
Page generated: Sun Dec 13 11:26:16 2020

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