Copper in PDB 6tyr: Crystal Structure of Laccase From Thermus Thermophilus HB27 with A Close Conformation of Its Beta-Hairpin

All present enzymatic activity of Crystal Structure of Laccase From Thermus Thermophilus HB27 with A Close Conformation of Its Beta-Hairpin:
1.10.3.2;

The structure of Crystal Structure of Laccase From Thermus Thermophilus HB27 with A Close Conformation of Its Beta-Hairpin, PDB code: 6tyr was solved by R.Miranda-Blancas, E.Rudino-Pinera, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.29 / 1.81
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	61.445, 85.386, 169.156, 90.00, 90.00, 90.00
R / Rfree (%)	18.1 / 23.3

The binding sites of Copper atom in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with A Close Conformation of Its Beta-Hairpin (pdb code 6tyr). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with A Close Conformation of Its Beta-Hairpin, PDB code: 6tyr:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with A Close Conformation of Its Beta-Hairpin


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Laccase From Thermus Thermophilus HB27 with A Close Conformation of Its Beta-Hairpin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu505 b:16.0 occ:0.86 ND1 A:HIS393 2.0 21.4 1.0 ND1 A:HIS450 2.1 16.1 1.0 SG A:CYS445 2.2 17.3 1.0 CE1 A:HIS393 2.9 18.8 1.0 CG A:HIS450 3.0 16.8 1.0 CE1 A:HIS450 3.1 20.3 1.0 CG A:HIS393 3.1 18.5 1.0 CB A:CYS445 3.2 16.6 1.0 CB A:HIS450 3.3 14.0 1.0 CB A:HIS393 3.6 13.2 1.0 SD A:MET455 3.7 21.1 1.0 CA A:HIS393 3.9 14.6 1.0 CD1 A:ILE447 3.9 23.3 1.0 CB A:ILE447 3.9 14.8 1.0 NE2 A:HIS393 4.0 17.5 1.0 NE2 A:HIS450 4.2 19.0 1.0 CD2 A:HIS393 4.2 15.6 1.0 CD2 A:HIS450 4.2 16.9 1.0 O A:ASP392 4.2 16.5 1.0 CG1 A:ILE447 4.3 14.4 1.0 CD A:PRO394 4.5 14.3 0.0 CE A:MET455 4.5 21.5 1.0 CD A:PRO394 4.5 14.2 1.0 CA A:CYS445 4.6 15.1 1.0 O A:ILE447 4.7 14.4 1.0 CG2 A:ILE447 4.8 16.6 1.0 N A:ILE447 4.8 16.4 1.0 N A:HIS393 4.9 13.1 1.0 CA A:HIS450 4.9 15.8 1.0 C A:HIS393 4.9 14.3 1.0 CA A:ILE447 4.9 14.4 1.0 C A:ASP392 5.0 16.2 1.0 N A:PRO394 5.0 14.4 0.0 N A:PRO394 5.0 14.3 1.0

Copper binding site 2 out of 3 in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with A Close Conformation of Its Beta-Hairpin


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Laccase From Thermus Thermophilus HB27 with A Close Conformation of Its Beta-Hairpin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu506 b:23.7 occ:0.72 NE2 A:HIS398 1.8 19.0 1.0 NE2 A:HIS444 1.9 19.1 1.0 NE2 A:HIS137 2.0 28.1 1.0 O A:HOH755 2.3 27.7 1.0 CE1 A:HIS398 2.8 19.9 1.0 CD2 A:HIS137 2.9 28.2 1.0 CD2 A:HIS444 2.9 16.1 1.0 CD2 A:HIS398 2.9 15.6 1.0 CE1 A:HIS444 3.0 19.3 1.0 CE1 A:HIS137 3.1 22.4 1.0 CD2 A:HIS396 3.5 17.2 1.0 O A:HOH625 3.7 31.0 1.0 CD2 A:HIS95 3.8 29.6 1.0 ND1 A:HIS398 3.9 18.2 1.0 NE2 A:HIS396 3.9 18.2 1.0 NE2 A:HIS95 3.9 27.5 1.0 CG A:HIS398 4.0 19.0 1.0 CG A:HIS444 4.0 17.2 1.0 ND1 A:HIS444 4.0 18.0 1.0 CG A:HIS137 4.1 24.9 1.0 ND1 A:HIS137 4.1 25.8 1.0 CG2 A:VAL442 4.3 14.5 1.0 CG A:HIS95 4.6 26.4 1.0 OE2 A:GLU451 4.7 23.9 1.0 CG A:HIS396 4.7 17.1 1.0 CE1 A:HIS95 4.7 24.9 1.0 OE1 A:GLU451 4.8 31.0 1.0 CD A:GLU451 4.9 25.7 1.0

Copper binding site 3 out of 3 in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with A Close Conformation of Its Beta-Hairpin


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of Laccase From Thermus Thermophilus HB27 with A Close Conformation of Its Beta-Hairpin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu507 b:22.2 occ:0.58 ND1 A:HIS97 1.9 20.3 1.0 NE2 A:HIS135 1.9 21.4 1.0 NE2 A:HIS446 2.2 20.5 1.0 CE1 A:HIS97 2.7 19.7 1.0 O A:HOH755 2.7 27.7 1.0 CE1 A:HIS135 2.9 19.5 1.0 CD2 A:HIS135 2.9 12.8 1.0 CE1 A:HIS446 3.0 17.2 1.0 CG A:HIS97 3.0 21.4 1.0 CD2 A:HIS446 3.2 18.5 1.0 CB A:HIS97 3.5 20.1 1.0 CZ2 A:TRP133 3.6 16.1 1.0 CD2 A:HIS95 3.8 29.6 1.0 NE2 A:HIS97 3.9 15.9 1.0 CE2 A:TRP133 3.9 13.2 1.0 ND1 A:HIS135 4.0 18.1 1.0 CG A:HIS135 4.0 17.2 1.0 CD2 A:HIS97 4.0 16.8 1.0 NE1 A:TRP133 4.1 14.3 1.0 ND1 A:HIS446 4.1 17.2 1.0 CH2 A:TRP133 4.3 17.5 1.0 CG A:HIS446 4.3 11.2 1.0 NE2 A:HIS95 4.3 27.5 1.0 NE2 A:HIS396 4.5 18.2 1.0 CD2 A:HIS396 4.6 17.2 1.0 O A:HOH625 4.6 31.0 1.0 CA A:HIS97 4.7 21.1 1.0 CD2 A:TRP133 4.9 14.3 1.0 CG A:HIS95 5.0 26.4 1.0

R.Miranda-Blancas, E.Rudino-Pinera. Dynamic Behavior of Alpha-Beta Loop at Laccase of Thermus Thermophilus at 1.7 Angstroms Resolution. To Be Published.