Copper in PDB 6rw7: An AA10 Lpmo From the Shipworm Symbiont Teredinibacter Turnerae

The structure of An AA10 Lpmo From the Shipworm Symbiont Teredinibacter Turnerae, PDB code: 6rw7 was solved by C.A.Fowler, F.Sabbadin, L.Ciano, G.R.Hemsworth, L.Elias, N.C.Bruce, S.Mcqueen-Mason, P.Walton, G.J.Davies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.25 / 1.40
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	36.644, 62.516, 43.185, 90.00, 99.13, 90.00
R / Rfree (%)	15.3 / 17.5

The structure of An AA10 Lpmo From the Shipworm Symbiont Teredinibacter Turnerae also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Copper atom in the An AA10 Lpmo From the Shipworm Symbiont Teredinibacter Turnerae (pdb code 6rw7). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the An AA10 Lpmo From the Shipworm Symbiont Teredinibacter Turnerae, PDB code: 6rw7:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in the An AA10 Lpmo From the Shipworm Symbiont Teredinibacter Turnerae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of An AA10 Lpmo From the Shipworm Symbiont Teredinibacter Turnerae within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu302 b:15.6 occ:1.00 NE2 A:HIS165 2.0 11.7 1.0 OE1 A:GLU5 2.2 17.3 1.0 O A:HOH463 2.2 35.1 1.0 OD2 A:ASP101 2.5 18.9 1.0 CE1 A:HIS165 2.9 12.2 1.0 CD A:GLU5 3.0 15.3 1.0 CD2 A:HIS165 3.1 12.4 1.0 OE2 A:GLU5 3.2 18.3 1.0 CG A:ASP101 3.5 14.3 1.0 CB A:ASP101 3.8 12.5 1.0 ND1 A:HIS165 4.0 12.6 1.0 O A:HOH449 4.1 13.6 1.0 CG A:HIS165 4.1 11.2 1.0 O A:ASN163 4.2 15.1 1.0 CG A:GLU5 4.4 13.6 1.0 OD1 A:ASP101 4.5 17.7 1.0 CA A:ASP101 4.7 11.1 1.0 CB A:GLU5 4.9 12.0 1.0

Copper binding site 2 out of 2 in the An AA10 Lpmo From the Shipworm Symbiont Teredinibacter Turnerae


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of An AA10 Lpmo From the Shipworm Symbiont Teredinibacter Turnerae within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu303 b:14.5 occ:1.00 ND1 A:HIS1 1.9 15.2 1.0 NE2 A:HIS107 2.0 15.4 1.0 N A:HIS1 2.2 11.8 1.0 O A:HOH568 2.6 42.5 1.0 CE1 A:HIS1 2.9 17.2 1.0 CG A:HIS1 2.9 13.8 1.0 CE1 A:HIS107 2.9 16.7 1.0 CD2 A:HIS107 3.0 14.8 1.0 O A:HOH459 3.1 26.0 1.0 CA A:HIS1 3.1 12.1 1.0 CB A:HIS1 3.3 12.7 1.0 CZ A:PHE195 3.5 10.5 1.0 OE1 A:GLU193 3.7 16.1 1.0 CA A:GLY105 3.9 12.9 1.0 O A:GLY105 4.0 12.2 1.0 CE1 A:PHE195 4.0 10.7 1.0 NE2 A:HIS1 4.0 18.1 1.0 CD2 A:HIS1 4.0 15.7 1.0 ND1 A:HIS107 4.1 16.6 1.0 CG A:HIS107 4.1 15.2 1.0 CE2 A:PHE195 4.3 10.6 1.0 C A:GLY105 4.3 12.7 1.0 C A:HIS1 4.5 12.1 1.0 CD A:GLU193 4.7 14.8 1.0 N A:GLY105 4.8 12.2 1.0 O A:HIS1 4.8 11.3 1.0

C.A.Fowler, F.Sabbadin, L.Ciano, G.R.Hemsworth, L.Elias, N.Bruce, S.Mcqueen-Mason, G.J.Davies, P.H.Walton. Discovery, Activity and Characterisation of An AA10 Lytic Polysaccharide Oxygenase From the Shipworm Symbiontteredinibacter Turnerae. Biotechnol Biofuels V. 12 232 2019.
ISSN: ESSN 1754-6834
PubMed: 31583018
DOI: 10.1186/S13068-019-1573-X