Atomistry » Copper » PDB 6pvy-6rhx » 6qwg
Atomistry »
  Copper »
    PDB 6pvy-6rhx »
      6qwg »

Copper in PDB 6qwg: Serial Femtosecond Crystallography Structure of Cu Nitrite Reductase From Achromobacter Cycloclastes: Nitrite Complex at Room Temperature

Enzymatic activity of Serial Femtosecond Crystallography Structure of Cu Nitrite Reductase From Achromobacter Cycloclastes: Nitrite Complex at Room Temperature

All present enzymatic activity of Serial Femtosecond Crystallography Structure of Cu Nitrite Reductase From Achromobacter Cycloclastes: Nitrite Complex at Room Temperature:
1.7.2.1;

Protein crystallography data

The structure of Serial Femtosecond Crystallography Structure of Cu Nitrite Reductase From Achromobacter Cycloclastes: Nitrite Complex at Room Temperature, PDB code: 6qwg was solved by A.E.Ebrahim, T.Moreno-Chicano, M.V.Appleby, J.W.Worrall, H.M.E.Duyvesteyn, R.W.Strange, J.Beale, D.Axford, D.A.Sherrell, H.Sugimoto, S.Owada, K.Tono, R.L.Owen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.65 / 1.90
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 97.600, 97.600, 97.600, 90.00, 90.00, 90.00
R / Rfree (%) 13.7 / 17.2

Copper Binding Sites:

The binding sites of Copper atom in the Serial Femtosecond Crystallography Structure of Cu Nitrite Reductase From Achromobacter Cycloclastes: Nitrite Complex at Room Temperature (pdb code 6qwg). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Serial Femtosecond Crystallography Structure of Cu Nitrite Reductase From Achromobacter Cycloclastes: Nitrite Complex at Room Temperature, PDB code: 6qwg:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 6qwg

Go back to Copper Binding Sites List in 6qwg
Copper binding site 1 out of 2 in the Serial Femtosecond Crystallography Structure of Cu Nitrite Reductase From Achromobacter Cycloclastes: Nitrite Complex at Room Temperature


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Serial Femtosecond Crystallography Structure of Cu Nitrite Reductase From Achromobacter Cycloclastes: Nitrite Complex at Room Temperature within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu402

b:35.1
occ:1.00
ND1 A:HIS145 2.1 31.4 1.0
ND1 A:HIS95 2.1 31.3 1.0
SG A:CYS136 2.2 33.2 1.0
SD A:MET150 2.5 32.6 1.0
CE1 A:HIS145 3.0 35.8 1.0
CE1 A:HIS95 3.0 34.9 1.0
CG A:HIS145 3.1 33.9 1.0
CG A:HIS95 3.2 31.9 1.0
CB A:CYS136 3.2 32.1 1.0
CE A:MET150 3.4 30.2 1.0
CB A:HIS95 3.5 32.2 1.0
CB A:HIS145 3.5 32.0 1.0
CA A:HIS95 3.9 29.9 1.0
CG A:MET150 3.9 34.0 1.0
NE2 A:HIS145 4.1 36.4 1.0
NE2 A:HIS95 4.2 32.2 1.0
O A:LEU94 4.2 34.6 1.0
CD2 A:HIS145 4.2 34.0 1.0
CD2 A:HIS95 4.3 27.3 1.0
CG A:PRO138 4.3 32.2 1.0
CB A:MET150 4.4 27.4 1.0
SD A:MET62 4.6 35.2 1.0
CA A:CYS136 4.6 27.4 1.0
N A:ASN96 4.6 29.7 1.0
CA A:HIS145 4.7 30.3 1.0
CD A:PRO138 4.7 33.3 1.0
CB A:MET62 4.8 33.9 1.0
C A:HIS95 4.8 31.1 1.0
N A:HIS95 4.9 32.3 1.0
C A:LEU94 5.0 34.5 1.0

Copper binding site 2 out of 2 in 6qwg

Go back to Copper Binding Sites List in 6qwg
Copper binding site 2 out of 2 in the Serial Femtosecond Crystallography Structure of Cu Nitrite Reductase From Achromobacter Cycloclastes: Nitrite Complex at Room Temperature


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Serial Femtosecond Crystallography Structure of Cu Nitrite Reductase From Achromobacter Cycloclastes: Nitrite Complex at Room Temperature within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu403

b:32.8
occ:1.00
NE2 A:HIS100 2.0 29.0 1.0
NE2 A:HIS135 2.1 28.6 1.0
CE1 A:HIS100 3.0 30.2 1.0
CD2 A:HIS100 3.1 30.0 1.0
CE1 A:HIS135 3.1 33.8 1.0
CD2 A:HIS135 3.1 30.9 1.0
ND1 A:HIS100 4.1 28.2 1.0
OD2 A:ASP98 4.1 44.5 1.0
CG A:HIS100 4.2 27.0 1.0
ND1 A:HIS135 4.2 31.4 1.0
CG A:HIS135 4.2 32.1 1.0
CG A:ASP98 4.6 43.1 1.0
OD1 A:ASP98 4.8 35.8 1.0

Reference:

T.Moreno-Chicano, A.Ebrahim, D.Axford, M.V.Appleby, J.H.Beale, A.K.Chaplin, H.M.E.Duyvesteyn, R.A.Ghiladi, S.Owada, D.A.Sherrell, R.W.Strange, H.Sugimoto, K.Tono, J.A.R.Worrall, R.L.Owen, M.A.Hough. High-Throughput Structures of Protein-Ligand Complexes at Room Temperature Using Serial Femtosecond Crystallography. Iucrj V. 6 1074 2019.
ISSN: ESSN 2052-2525
PubMed: 31709063
DOI: 10.1107/S2052252519011655
Page generated: Wed Jul 31 06:52:23 2024

Last articles

Mg in 4Y52
Mg in 4Y30
Mg in 4Y2V
Mg in 4Y2X
Mg in 4Y2Y
Mg in 4Y2U
Mg in 4Y2T
Mg in 4Y2Q
Mg in 4Y2R
Mg in 4Y2S
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy