Copper in PDB 6qug: Ghk Tagged Mbp-NUP98(1-29)

The structure of Ghk Tagged Mbp-NUP98(1-29), PDB code: 6qug was solved by T.Huyton, D.Gorlich, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.14 / 2.70
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	82.910, 286.780, 110.780, 90.00, 92.01, 90.00
R / Rfree (%)	19.7 / 22.8

The structure of Ghk Tagged Mbp-NUP98(1-29) also contains other interesting chemical elements:

Sodium

(Na)

5 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Copper atom in the Ghk Tagged Mbp-NUP98(1-29) (pdb code 6qug). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 12 binding sites of Copper where determined in the Ghk Tagged Mbp-NUP98(1-29), PDB code: 6qug:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Copper binding site 1 out of 12 in the Ghk Tagged Mbp-NUP98(1-29)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Ghk Tagged Mbp-NUP98(1-29) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu403 b:71.4 occ:1.00 ND1 A:HIS-1 2.0 79.0 1.0 N A:GLY-2 2.1 88.6 1.0 ND1 B:HIS39 2.1 79.7 1.0 N A:HIS-1 2.1 77.5 1.0 O B:HIS39 2.2 77.5 1.0 CG A:HIS-1 3.0 78.0 1.0 CE1 B:HIS39 3.0 78.9 1.0 C A:GLY-2 3.0 78.9 1.0 CE1 A:HIS-1 3.1 78.5 1.0 CA A:HIS-1 3.1 79.5 1.0 CA A:GLY-2 3.1 78.1 1.0 CB A:HIS-1 3.1 80.3 1.0 CG B:HIS39 3.2 73.5 1.0 C B:HIS39 3.4 67.0 1.0 CB B:HIS39 3.6 68.2 1.0 N A:LYS0 4.0 85.9 1.0 C A:HIS-1 4.0 87.2 1.0 CA B:HIS39 4.0 66.4 1.0 CD2 A:HIS-1 4.1 80.2 1.0 NE2 B:HIS39 4.2 75.9 1.0 NE2 A:HIS-1 4.2 84.0 1.0 O A:GLY-2 4.2 70.4 1.0 CD2 B:HIS39 4.3 71.8 1.0 N B:PRO40 4.4 64.4 1.0 CA B:PRO40 4.7 66.5 1.0 N B:HIS39 4.8 67.3 1.0 C B:PRO40 4.8 65.9 1.0 CG A:LYS0 4.8 93.3 1.0 N B:ASP41 4.9 72.9 1.0 CA B:GLY13 4.9 65.7 1.0

Copper binding site 2 out of 12 in the Ghk Tagged Mbp-NUP98(1-29)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Ghk Tagged Mbp-NUP98(1-29) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu403 b:66.4 occ:0.93 N B:GLY-2 2.0 96.0 1.0 ND1 A:HIS39 2.1 64.2 1.0 ND1 B:HIS-1 2.1 99.4 1.0 N B:HIS-1 2.1 94.0 1.0 O A:HIS39 2.3 66.0 1.0 CE1 A:HIS39 2.8 66.9 1.0 C B:GLY-2 2.9 88.6 1.0 CA B:GLY-2 3.0 87.3 1.0 CG B:HIS-1 3.0 96.4 1.0 CE1 B:HIS-1 3.1 96.4 1.0 CG A:HIS39 3.1 64.2 1.0 CA B:HIS-1 3.2 92.9 1.0 CB B:HIS-1 3.2 95.4 1.0 C A:HIS39 3.3 58.5 1.0 CB A:HIS39 3.7 61.6 1.0 NE2 A:HIS39 3.9 66.9 1.0 CA A:HIS39 4.0 60.2 1.0 N B:LYS0 4.0 93.3 1.0 C B:HIS-1 4.1 94.8 1.0 O B:GLY-2 4.1 89.4 1.0 CD2 A:HIS39 4.1 59.0 1.0 CD2 B:HIS-1 4.2 96.8 1.0 NE2 B:HIS-1 4.2 98.6 1.0 N A:PRO40 4.3 61.5 1.0 CA A:PRO40 4.5 62.2 1.0 N A:HIS39 4.6 59.4 1.0 C A:PRO40 4.8 64.7 1.0 N A:ASP41 4.9 64.1 1.0

Copper binding site 3 out of 12 in the Ghk Tagged Mbp-NUP98(1-29)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Ghk Tagged Mbp-NUP98(1-29) within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu403 b:58.9 occ:1.00 ND1 G:HIS39 2.0 65.2 1.0 ND1 C:HIS-1 2.0 71.0 1.0 N C:HIS-1 2.0 73.2 1.0 N C:GLY-2 2.0 85.1 1.0 O G:HIS39 2.4 61.0 1.0 CE1 G:HIS39 2.8 59.6 1.0 C C:GLY-2 2.9 73.7 1.0 CG C:HIS-1 2.9 68.6 1.0 CA C:GLY-2 3.0 76.7 1.0 CG G:HIS39 3.0 61.1 1.0 CE1 C:HIS-1 3.0 67.8 1.0 CA C:HIS-1 3.1 68.9 1.0 CB C:HIS-1 3.1 69.5 1.0 C G:HIS39 3.4 55.0 1.0 CB G:HIS39 3.5 58.3 1.0 N C:LYS0 3.8 70.1 1.0 C C:HIS-1 3.9 69.0 1.0 NE2 G:HIS39 3.9 57.9 1.0 CA G:HIS39 4.0 57.9 1.0 CD2 G:HIS39 4.0 59.0 1.0 CD2 C:HIS-1 4.1 68.0 1.0 O C:GLY-2 4.1 73.9 1.0 O C:HOH503 4.1 41.3 1.0 NE2 C:HIS-1 4.1 68.1 1.0 N G:PRO40 4.4 53.2 1.0 N G:HIS39 4.6 57.7 1.0 CA G:PRO40 4.7 51.9 1.0 C G:PRO40 4.9 48.3 1.0 O C:HIS-1 5.0 68.5 1.0

Copper binding site 4 out of 12 in the Ghk Tagged Mbp-NUP98(1-29)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Ghk Tagged Mbp-NUP98(1-29) within 5.0Å range: probe atom residue distance (Å) B Occ D:Cu403 b:59.0 occ:1.00 ND1 D:HIS-1 2.0 64.2 1.0 N D:HIS-1 2.0 67.2 1.0 N D:GLY-2 2.1 72.9 1.0 CG D:HIS-1 2.9 62.4 1.0 C D:GLY-2 2.9 67.3 1.0 CE1 D:HIS-1 3.0 63.5 1.0 CA D:HIS-1 3.0 64.8 1.0 CA D:GLY-2 3.1 64.8 1.0 CB D:HIS-1 3.1 63.9 1.0 N D:LYS0 3.9 65.2 1.0 C D:HIS-1 3.9 66.9 1.0 CD2 D:HIS-1 4.1 63.9 1.0 O D:GLY-2 4.1 65.2 1.0 NE2 D:HIS-1 4.2 65.2 1.0 O D:HIS-1 5.0 69.9 1.0

Copper binding site 5 out of 12 in the Ghk Tagged Mbp-NUP98(1-29)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Ghk Tagged Mbp-NUP98(1-29) within 5.0Å range: probe atom residue distance (Å) B Occ E:Cu403 b:51.6 occ:1.00 ND1 E:HIS-1 2.0 62.0 1.0 ND1 K:HIS39 2.0 49.5 1.0 N E:GLY-2 2.1 69.2 1.0 N E:HIS-1 2.1 62.9 1.0 O K:HIS39 2.3 50.4 1.0 CE1 K:HIS39 2.9 49.8 1.0 CG E:HIS-1 3.0 60.8 1.0 C E:GLY-2 3.0 61.0 1.0 CE1 E:HIS-1 3.0 62.5 1.0 CA E:GLY-2 3.1 60.8 1.0 CG K:HIS39 3.1 50.2 1.0 CA E:HIS-1 3.1 62.3 1.0 CB E:HIS-1 3.2 62.5 1.0 C K:HIS39 3.4 46.2 1.0 CB K:HIS39 3.6 53.5 1.0 N E:LYS0 3.9 67.3 1.0 C E:HIS-1 4.0 64.0 1.0 NE2 K:HIS39 4.0 54.0 1.0 CA K:HIS39 4.1 50.3 1.0 CD2 E:HIS-1 4.1 61.6 1.0 NE2 E:HIS-1 4.1 64.4 1.0 CD2 K:HIS39 4.2 51.8 1.0 O E:GLY-2 4.2 60.0 1.0 N K:PRO40 4.5 46.0 1.0 CA K:PRO40 4.7 46.6 1.0 N K:HIS39 4.8 54.5 1.0 C K:PRO40 4.9 45.7 1.0 CA K:GLY13 5.0 50.2 1.0

Copper binding site 6 out of 12 in the Ghk Tagged Mbp-NUP98(1-29)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Ghk Tagged Mbp-NUP98(1-29) within 5.0Å range: probe atom residue distance (Å) B Occ F:Cu403 b:53.6 occ:1.00 ND1 F:HIS-1 2.0 68.9 1.0 N F:GLY-2 2.1 79.9 1.0 N F:HIS-1 2.2 70.7 1.0 CE1 F:HIS-1 2.9 69.8 1.0 CG F:HIS-1 3.0 69.3 1.0 C F:GLY-2 3.0 71.4 1.0 CA F:GLY-2 3.1 72.1 1.0 CA F:HIS-1 3.2 70.2 1.0 CB F:HIS-1 3.3 71.5 1.0 N F:LYS0 4.0 82.8 1.0 NE2 F:HIS-1 4.0 70.0 1.0 C F:HIS-1 4.1 74.7 1.0 CD2 F:HIS-1 4.1 68.3 1.0 O F:GLY-2 4.3 72.1 1.0 CG F:LYS0 4.5 98.6 1.0

Copper binding site 7 out of 12 in the Ghk Tagged Mbp-NUP98(1-29)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Ghk Tagged Mbp-NUP98(1-29) within 5.0Å range: probe atom residue distance (Å) B Occ G:Cu403 b:59.5 occ:1.00 ND1 G:HIS-1 2.0 66.0 1.0 ND1 C:HIS39 2.0 72.0 1.0 N G:GLY-2 2.1 80.2 1.0 O C:HIS39 2.2 70.5 1.0 N G:HIS-1 2.2 67.0 1.0 CE1 C:HIS39 2.8 71.3 1.0 CE1 G:HIS-1 2.9 65.3 1.0 CG G:HIS-1 3.0 67.2 1.0 C G:GLY-2 3.1 71.0 1.0 CG C:HIS39 3.1 65.1 1.0 CA G:GLY-2 3.1 69.8 1.0 CA G:HIS-1 3.2 66.9 1.0 CB G:HIS-1 3.3 66.4 1.0 C C:HIS39 3.3 61.0 1.0 CB C:HIS39 3.5 60.6 1.0 N G:LYS0 3.9 73.4 1.0 NE2 C:HIS39 4.0 72.7 1.0 CA C:HIS39 4.0 60.4 1.0 C G:HIS-1 4.0 70.3 1.0 CD2 G:HIS-1 4.1 65.7 1.0 NE2 G:HIS-1 4.1 67.9 1.0 CD2 C:HIS39 4.1 67.6 1.0 O G:GLY-2 4.3 77.2 1.0 N C:PRO40 4.4 62.3 1.0 CA C:PRO40 4.7 60.2 1.0 N C:HIS39 4.7 55.9 1.0 C C:PRO40 4.8 58.5 1.0 N C:ASP41 4.9 59.2 1.0 CA C:GLY13 5.0 59.1 1.0

Copper binding site 8 out of 12 in the Ghk Tagged Mbp-NUP98(1-29)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Ghk Tagged Mbp-NUP98(1-29) within 5.0Å range: probe atom residue distance (Å) B Occ H:Cu403 b:46.4 occ:1.00 ND1 H:HIS-1 2.0 58.7 1.0 N H:GLY-2 2.1 70.2 1.0 N H:HIS-1 2.1 58.6 1.0 CG H:HIS-1 3.0 57.7 1.0 C H:GLY-2 3.0 62.1 1.0 CE1 H:HIS-1 3.0 57.8 1.0 CA H:HIS-1 3.1 55.3 1.0 CA H:GLY-2 3.1 60.3 1.0 CB H:HIS-1 3.2 56.9 1.0 N H:LYS0 3.9 54.0 1.0 C H:HIS-1 4.0 52.8 1.0 NE2 H:HIS-1 4.1 59.5 1.0 CD2 H:HIS-1 4.1 57.0 1.0 O H:GLY-2 4.2 62.3 1.0

Copper binding site 9 out of 12 in the Ghk Tagged Mbp-NUP98(1-29)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 9 of Ghk Tagged Mbp-NUP98(1-29) within 5.0Å range: probe atom residue distance (Å) B Occ I:Cu403 b:76.4 occ:1.00 ND1 I:HIS-1 2.0 80.6 1.0 N I:GLY-2 2.0 89.2 1.0 N I:HIS-1 2.1 81.3 1.0 C I:GLY-2 2.9 78.9 1.0 CG I:HIS-1 3.0 80.1 1.0 CA I:GLY-2 3.0 79.8 1.0 CE1 I:HIS-1 3.0 80.0 1.0 CA I:HIS-1 3.1 81.7 1.0 CB I:HIS-1 3.2 80.5 1.0 N I:LYS0 3.9 80.8 1.0 C I:HIS-1 4.0 82.1 1.0 O I:GLY-2 4.1 82.1 1.0 CD2 I:HIS-1 4.1 82.6 1.0 NE2 I:HIS-1 4.1 81.7 1.0 CG I:LYS0 4.9 78.9 1.0

Copper binding site 10 out of 12 in the Ghk Tagged Mbp-NUP98(1-29)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 10 of Ghk Tagged Mbp-NUP98(1-29) within 5.0Å range: probe atom residue distance (Å) B Occ J:Cu403 b:50.7 occ:1.00 ND1 J:HIS-1 2.1 60.2 1.0 N J:GLY-2 2.1 75.3 1.0 N J:HIS-1 2.1 61.8 1.0 C J:GLY-2 3.0 63.6 1.0 CG J:HIS-1 3.0 61.4 1.0 CE1 J:HIS-1 3.1 61.1 1.0 CA J:GLY-2 3.1 64.7 1.0 CA J:HIS-1 3.1 62.5 1.0 CB J:HIS-1 3.3 64.1 1.0 N J:LYS0 3.7 73.3 1.0 C J:HIS-1 3.9 64.2 1.0 O J:GLY-2 4.2 63.5 1.0 CD2 J:HIS-1 4.2 61.3 1.0 NE2 J:HIS-1 4.2 63.2 1.0 CG J:LYS0 4.3 97.9 1.0 CB J:LYS0 4.9 88.0 1.0 O J:HIS-1 5.0 63.4 1.0 CA J:LYS0 5.0 80.7 1.0

T.Huyton, D.Goerlich. Using the Copper Binding Peptide Ghk For Phasing Structures To Be Published.