Copper in PDB 6q29: Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposted Dose 2.5 Mgy)

Enzymatic activity of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposted Dose 2.5 Mgy)

All present enzymatic activity of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposted Dose 2.5 Mgy):
1.10.3.2;

Protein crystallography data

The structure of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposted Dose 2.5 Mgy), PDB code: 6q29 was solved by R.Miranda-Blancas, E.Rudino-Pinera, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	33.15 / 1.70
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	50.550, 62.760, 67.120, 90.00, 93.88, 90.00
*R / R_free (%)*	18 / 22

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposted Dose 2.5 Mgy) (pdb code 6q29). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposted Dose 2.5 Mgy), PDB code: 6q29:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in 6q29

Go back to

Copper Binding Sites List in 6q29

Copper binding site 1 out of 2 in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposted Dose 2.5 Mgy)

Mono view

Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposted Dose 2.5 Mgy) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cu503 b:9.6 occ:1.00	ND1	A:HIS97	2.1	7.3	1.0
	NE2	A:HIS135	2.2	9.3	1.0
	NE2	A:HIS446	2.4	8.9	1.0
	CE1	A:HIS97	2.9	6.1	1.0
	CE1	A:HIS135	3.1	9.3	1.0
	CD2	A:HIS135	3.1	6.2	1.0
	CE1	A:HIS446	3.2	5.7	1.0
	CG	A:HIS97	3.2	7.3	1.0
	CD2	A:HIS446	3.5	10.2	1.0
	CZ2	A:TRP133	3.7	4.6	1.0
	CB	A:HIS97	3.7	6.4	1.0
	CD2	A:HIS95	3.8	7.1	1.0
	CE2	A:TRP133	4.0	4.6	1.0
	NE2	A:HIS97	4.1	9.5	1.0
	NE1	A:TRP133	4.1	6.6	1.0
	ND1	A:HIS135	4.2	4.8	1.0
	CG	A:HIS135	4.3	5.6	1.0
	CD2	A:HIS97	4.3	5.6	1.0
	ND1	A:HIS446	4.4	6.7	1.0
	NE2	A:HIS95	4.4	7.5	1.0
	CH2	A:TRP133	4.4	6.9	1.0
	CG	A:HIS446	4.5	7.2	1.0
	NE2	A:HIS396	4.7	6.1	1.0
	CD2	A:HIS396	4.7	4.7	1.0
	CA	A:HIS97	5.0	3.5	1.0
	CD2	A:TRP133	5.0	5.7	1.0

Copper binding site 2 out of 2 in 6q29

Go back to

Copper Binding Sites List in 6q29

Copper binding site 2 out of 2 in the Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposted Dose 2.5 Mgy)

Mono view

Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Laccase From Thermus Thermophilus HB27 with An Open Conformation of Beta-Hairpin (Average Deposted Dose 2.5 Mgy) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cu504 b:9.0 occ:1.00	ND1	A:HIS450	2.2	7.6	1.0
	ND1	A:HIS393	2.2	7.4	1.0
	SG	A:CYS445	2.2	6.0	1.0
	CE1	A:HIS393	3.0	13.8	1.0
	CE1	A:HIS450	3.1	8.0	1.0
	CG	A:HIS450	3.2	5.2	1.0
	CG	A:HIS393	3.3	6.2	1.0
	CB	A:HIS450	3.5	7.6	1.0
	CB	A:CYS445	3.5	11.6	1.0
	CB	A:HIS393	3.8	8.0	1.0
	SD	A:MET455	3.9	13.7	1.0
	CB	A:ILE447	4.2	8.2	1.0
	NE2	A:HIS393	4.2	14.1	1.0
	CA	A:HIS393	4.2	5.9	1.0
	NE2	A:HIS450	4.2	7.4	1.0
	CD1	A:ILE447	4.3	5.5	1.0
	CD2	A:HIS450	4.3	7.4	1.0
	CD2	A:HIS393	4.4	11.1	1.0
	CG1	A:ILE447	4.6	5.9	1.0
	CE	A:MET455	4.6	9.7	1.0
	O	A:ASP392	4.7	5.3	1.0
	CD	A:PRO394	4.7	7.1	1.0
	O	A:ILE447	4.8	8.7	1.0
	CG2	A:ILE447	4.9	8.5	1.0
	CA	A:CYS445	5.0	8.2	1.0
	N	A:ILE447	5.0	6.8	1.0

Reference:

R.Miranda-Blancas, E.Rudino-Pinera. Dynamic Behavior of Alpha-Beta Loop at Laccase of Thermus Thermophilus at 1.7 Angstroms Resolution. To Be Published.

Page generated: Wed Jul 31 06:46:59 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy