Copper in PDB 6oln: Controlling the Self-Assembly of Synthetic Metal-Coordinating Coiled- Coil Peptides: Orthorhombic Lattice From A Trimeric Coiled Coil
Protein crystallography data
The structure of Controlling the Self-Assembly of Synthetic Metal-Coordinating Coiled- Coil Peptides: Orthorhombic Lattice From A Trimeric Coiled Coil, PDB code: 6oln
was solved by
K.A.Scheib,
W.S.Horne,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
41.55 /
2.50
|
Space group
|
P 2 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
48.783,
50.962,
79.264,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
26.8 /
29.5
|
Other elements in 6oln:
The structure of Controlling the Self-Assembly of Synthetic Metal-Coordinating Coiled- Coil Peptides: Orthorhombic Lattice From A Trimeric Coiled Coil also contains other interesting chemical elements:
Copper Binding Sites:
The binding sites of Copper atom in the Controlling the Self-Assembly of Synthetic Metal-Coordinating Coiled- Coil Peptides: Orthorhombic Lattice From A Trimeric Coiled Coil
(pdb code 6oln). This binding sites where shown within
5.0 Angstroms radius around Copper atom.
In total 6 binding sites of Copper where determined in the
Controlling the Self-Assembly of Synthetic Metal-Coordinating Coiled- Coil Peptides: Orthorhombic Lattice From A Trimeric Coiled Coil, PDB code: 6oln:
Jump to Copper binding site number:
1;
2;
3;
4;
5;
6;
Copper binding site 1 out
of 6 in 6oln
Go back to
Copper Binding Sites List in 6oln
Copper binding site 1 out
of 6 in the Controlling the Self-Assembly of Synthetic Metal-Coordinating Coiled- Coil Peptides: Orthorhombic Lattice From A Trimeric Coiled Coil
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 1 of Controlling the Self-Assembly of Synthetic Metal-Coordinating Coiled- Coil Peptides: Orthorhombic Lattice From A Trimeric Coiled Coil within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cu101
b:58.7
occ:1.00
|
NT2
|
A:7WJ21
|
2.0
|
59.5
|
1.0
|
NU1
|
A:7WJ21
|
2.2
|
38.0
|
1.0
|
NU3
|
A:7WJ21
|
2.2
|
59.3
|
1.0
|
CS1
|
A:7WJ21
|
2.9
|
59.0
|
1.0
|
CS2
|
A:7WJ21
|
2.9
|
54.5
|
1.0
|
CT1
|
A:7WJ21
|
3.0
|
46.1
|
1.0
|
CT3
|
A:7WJ21
|
3.0
|
62.9
|
1.0
|
CV3
|
A:7WJ21
|
3.2
|
62.1
|
1.0
|
CV1
|
A:7WJ21
|
3.2
|
45.8
|
1.0
|
CR1
|
A:7WJ21
|
4.2
|
52.5
|
1.0
|
CR2
|
A:7WJ21
|
4.2
|
48.1
|
1.0
|
O
|
A:HOH217
|
4.2
|
36.5
|
1.0
|
CU2
|
A:7WJ21
|
4.3
|
53.4
|
1.0
|
CU4
|
A:7WJ21
|
4.3
|
58.3
|
1.0
|
CW2
|
A:7WJ21
|
4.5
|
57.1
|
1.0
|
CW1
|
A:7WJ21
|
4.5
|
50.7
|
1.0
|
CQ
|
A:7WJ21
|
4.7
|
52.6
|
1.0
|
CV2
|
A:7WJ21
|
4.9
|
46.8
|
1.0
|
CV4
|
A:7WJ21
|
4.9
|
56.6
|
1.0
|
|
Copper binding site 2 out
of 6 in 6oln
Go back to
Copper Binding Sites List in 6oln
Copper binding site 2 out
of 6 in the Controlling the Self-Assembly of Synthetic Metal-Coordinating Coiled- Coil Peptides: Orthorhombic Lattice From A Trimeric Coiled Coil
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 2 of Controlling the Self-Assembly of Synthetic Metal-Coordinating Coiled- Coil Peptides: Orthorhombic Lattice From A Trimeric Coiled Coil within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cu101
b:81.4
occ:1.00
|
NT2
|
B:7WJ21
|
2.0
|
77.2
|
1.0
|
NU3
|
B:7WJ21
|
2.2
|
61.9
|
1.0
|
NU1
|
B:7WJ21
|
2.2
|
74.2
|
1.0
|
CS1
|
B:7WJ21
|
2.9
|
75.5
|
1.0
|
CS2
|
B:7WJ21
|
2.9
|
70.0
|
1.0
|
CT1
|
B:7WJ21
|
2.9
|
75.5
|
1.0
|
CT3
|
B:7WJ21
|
3.0
|
64.6
|
1.0
|
CV3
|
B:7WJ21
|
3.2
|
56.3
|
1.0
|
CV1
|
B:7WJ21
|
3.2
|
79.4
|
1.0
|
CR1
|
B:7WJ21
|
4.2
|
70.2
|
1.0
|
CR2
|
B:7WJ21
|
4.2
|
71.7
|
1.0
|
CU2
|
B:7WJ21
|
4.3
|
76.1
|
1.0
|
CU4
|
B:7WJ21
|
4.3
|
69.2
|
1.0
|
CW2
|
B:7WJ21
|
4.5
|
58.8
|
1.0
|
CW1
|
B:7WJ21
|
4.5
|
73.4
|
1.0
|
CQ
|
B:7WJ21
|
4.7
|
72.6
|
1.0
|
CV4
|
B:7WJ21
|
4.9
|
67.2
|
1.0
|
CV2
|
B:7WJ21
|
4.9
|
69.1
|
1.0
|
|
Copper binding site 3 out
of 6 in 6oln
Go back to
Copper Binding Sites List in 6oln
Copper binding site 3 out
of 6 in the Controlling the Self-Assembly of Synthetic Metal-Coordinating Coiled- Coil Peptides: Orthorhombic Lattice From A Trimeric Coiled Coil
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 3 of Controlling the Self-Assembly of Synthetic Metal-Coordinating Coiled- Coil Peptides: Orthorhombic Lattice From A Trimeric Coiled Coil within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cu101
b:75.3
occ:1.00
|
NT2
|
C:7WJ21
|
1.9
|
77.0
|
1.0
|
NU3
|
C:7WJ21
|
2.2
|
75.3
|
1.0
|
NU1
|
C:7WJ21
|
2.2
|
73.0
|
1.0
|
CS1
|
C:7WJ21
|
2.8
|
69.8
|
1.0
|
CS2
|
C:7WJ21
|
2.9
|
73.0
|
1.0
|
CT1
|
C:7WJ21
|
2.9
|
70.9
|
1.0
|
CT3
|
C:7WJ21
|
3.0
|
71.5
|
1.0
|
CV3
|
C:7WJ21
|
3.2
|
70.0
|
1.0
|
CV1
|
C:7WJ21
|
3.2
|
61.7
|
1.0
|
CR1
|
C:7WJ21
|
4.2
|
60.9
|
1.0
|
CR2
|
C:7WJ21
|
4.2
|
68.1
|
1.0
|
CU2
|
C:7WJ21
|
4.3
|
74.3
|
1.0
|
CU4
|
C:7WJ21
|
4.3
|
73.8
|
1.0
|
CW2
|
C:7WJ21
|
4.5
|
72.1
|
1.0
|
CW1
|
C:7WJ21
|
4.5
|
64.9
|
1.0
|
CQ
|
C:7WJ21
|
4.7
|
59.2
|
1.0
|
CV4
|
C:7WJ21
|
4.9
|
67.7
|
1.0
|
CV2
|
C:7WJ21
|
5.0
|
70.1
|
1.0
|
|
Copper binding site 4 out
of 6 in 6oln
Go back to
Copper Binding Sites List in 6oln
Copper binding site 4 out
of 6 in the Controlling the Self-Assembly of Synthetic Metal-Coordinating Coiled- Coil Peptides: Orthorhombic Lattice From A Trimeric Coiled Coil
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 4 of Controlling the Self-Assembly of Synthetic Metal-Coordinating Coiled- Coil Peptides: Orthorhombic Lattice From A Trimeric Coiled Coil within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cu100
b:85.0
occ:1.00
|
NT2
|
D:7WJ21
|
1.9
|
78.8
|
1.0
|
NU3
|
D:7WJ21
|
2.2
|
76.2
|
1.0
|
NU1
|
D:7WJ21
|
2.2
|
85.5
|
1.0
|
CS2
|
D:7WJ21
|
2.8
|
78.1
|
1.0
|
CS1
|
D:7WJ21
|
2.9
|
87.3
|
1.0
|
CT3
|
D:7WJ21
|
2.9
|
78.1
|
1.0
|
CT1
|
D:7WJ21
|
3.0
|
92.1
|
1.0
|
CV1
|
D:7WJ21
|
3.2
|
85.1
|
1.0
|
CV3
|
D:7WJ21
|
3.2
|
70.7
|
1.0
|
CR2
|
D:7WJ21
|
4.1
|
83.6
|
1.0
|
CR1
|
D:7WJ21
|
4.2
|
91.0
|
1.0
|
CU4
|
D:7WJ21
|
4.3
|
72.6
|
1.0
|
CU2
|
D:7WJ21
|
4.3
|
94.9
|
1.0
|
CW1
|
D:7WJ21
|
4.5
|
89.6
|
1.0
|
CW2
|
D:7WJ21
|
4.5
|
66.3
|
1.0
|
CQ
|
D:7WJ21
|
4.7
|
88.6
|
1.0
|
CV4
|
D:7WJ21
|
4.9
|
74.3
|
1.0
|
CV2
|
D:7WJ21
|
4.9
|
95.7
|
1.0
|
|
Copper binding site 5 out
of 6 in 6oln
Go back to
Copper Binding Sites List in 6oln
Copper binding site 5 out
of 6 in the Controlling the Self-Assembly of Synthetic Metal-Coordinating Coiled- Coil Peptides: Orthorhombic Lattice From A Trimeric Coiled Coil
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 5 of Controlling the Self-Assembly of Synthetic Metal-Coordinating Coiled- Coil Peptides: Orthorhombic Lattice From A Trimeric Coiled Coil within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cu100
b:57.4
occ:1.00
|
NT2
|
E:7WJ21
|
2.0
|
56.1
|
1.0
|
NU1
|
E:7WJ21
|
2.2
|
54.8
|
1.0
|
NU3
|
E:7WJ21
|
2.2
|
37.1
|
1.0
|
CS1
|
E:7WJ21
|
2.9
|
55.5
|
1.0
|
CS2
|
E:7WJ21
|
2.9
|
54.0
|
1.0
|
CT1
|
E:7WJ21
|
2.9
|
56.5
|
1.0
|
CT3
|
E:7WJ21
|
3.0
|
43.3
|
1.0
|
CV3
|
E:7WJ21
|
3.2
|
34.5
|
1.0
|
CV1
|
E:7WJ21
|
3.2
|
55.1
|
1.0
|
CR1
|
E:7WJ21
|
4.2
|
49.9
|
1.0
|
CR2
|
E:7WJ21
|
4.2
|
50.1
|
1.0
|
CU2
|
E:7WJ21
|
4.3
|
57.7
|
1.0
|
CU4
|
E:7WJ21
|
4.3
|
42.0
|
1.0
|
CW2
|
E:7WJ21
|
4.5
|
43.4
|
1.0
|
CW1
|
E:7WJ21
|
4.5
|
51.9
|
1.0
|
CQ
|
E:7WJ21
|
4.7
|
47.9
|
1.0
|
CV2
|
E:7WJ21
|
4.9
|
53.0
|
1.0
|
CV4
|
E:7WJ21
|
4.9
|
44.8
|
1.0
|
|
Copper binding site 6 out
of 6 in 6oln
Go back to
Copper Binding Sites List in 6oln
Copper binding site 6 out
of 6 in the Controlling the Self-Assembly of Synthetic Metal-Coordinating Coiled- Coil Peptides: Orthorhombic Lattice From A Trimeric Coiled Coil
Mono view
Stereo pair view
|
A full contact list of Copper with other atoms in the Cu binding
site number 6 of Controlling the Self-Assembly of Synthetic Metal-Coordinating Coiled- Coil Peptides: Orthorhombic Lattice From A Trimeric Coiled Coil within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cu100
b:68.2
occ:1.00
|
NT2
|
F:7WJ21
|
1.9
|
57.9
|
1.0
|
NU1
|
F:7WJ21
|
2.2
|
49.6
|
1.0
|
NU3
|
F:7WJ21
|
2.2
|
63.7
|
1.0
|
CS2
|
F:7WJ21
|
2.8
|
54.5
|
1.0
|
CS1
|
F:7WJ21
|
2.9
|
45.2
|
1.0
|
CT3
|
F:7WJ21
|
2.9
|
59.9
|
1.0
|
CT1
|
F:7WJ21
|
3.0
|
36.5
|
1.0
|
CV1
|
F:7WJ21
|
3.2
|
38.8
|
1.0
|
CV3
|
F:7WJ21
|
3.2
|
58.0
|
1.0
|
CR2
|
F:7WJ21
|
4.2
|
43.9
|
1.0
|
CR1
|
F:7WJ21
|
4.2
|
37.8
|
1.0
|
CU4
|
F:7WJ21
|
4.3
|
63.6
|
1.0
|
CU2
|
F:7WJ21
|
4.3
|
29.1
|
1.0
|
CW1
|
F:7WJ21
|
4.5
|
32.6
|
1.0
|
CW2
|
F:7WJ21
|
4.5
|
60.6
|
1.0
|
CQ
|
F:7WJ21
|
4.7
|
37.5
|
1.0
|
O
|
A:HOH207
|
4.9
|
25.9
|
1.0
|
CV2
|
F:7WJ21
|
4.9
|
32.6
|
1.0
|
CV4
|
F:7WJ21
|
4.9
|
67.9
|
1.0
|
|
Reference:
K.A.Scheib,
N.A.Tavenor,
M.J.Lawless,
S.Saxena,
W.S.Horne.
Understanding and Controlling the Metal-Directed Assembly of Terpyridine-Functionalized Coiled-Coil Peptides. Chem.Commun.(Camb.) V. 55 7752 2019.
ISSN: ESSN 1364-548X
PubMed: 31204733
DOI: 10.1039/C9CC03496J
Page generated: Wed Jul 31 06:41:36 2024
|