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Copper in PDB 6n5u: Crystal Structure of Arabidopsis Thaliana Scoi with Copper Bound

Protein crystallography data

The structure of Crystal Structure of Arabidopsis Thaliana Scoi with Copper Bound, PDB code: 6n5u was solved by M.N.Lisa, E.Giannini, M.E.Llases, P.M.Alzari, A.J.Vila, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.75 / 2.66
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 53.650, 80.440, 72.310, 90.00, 94.75, 90.00
R / Rfree (%) 18.7 / 23.3

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of Arabidopsis Thaliana Scoi with Copper Bound (pdb code 6n5u). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the Crystal Structure of Arabidopsis Thaliana Scoi with Copper Bound, PDB code: 6n5u:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in 6n5u

Go back to Copper Binding Sites List in 6n5u
Copper binding site 1 out of 3 in the Crystal Structure of Arabidopsis Thaliana Scoi with Copper Bound


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Arabidopsis Thaliana Scoi with Copper Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu201

b:56.4
occ:0.50
SG A:CYS42 2.3 52.0 1.0
SG A:CYS46 2.4 55.5 1.0
NE2 A:HIS131 2.5 43.3 1.0
CB A:CYS42 3.2 46.0 1.0
CE1 A:HIS131 3.3 43.0 1.0
CE1 A:PHE39 3.6 42.9 1.0
CB A:CYS46 3.6 52.1 1.0
CD2 A:HIS131 3.6 43.4 1.0
N A:CYS46 3.7 54.7 1.0
CD1 A:PHE39 3.7 40.4 1.0
CB A:ILE45 4.0 63.8 1.0
CA A:CYS46 4.1 52.6 1.0
CG2 A:ILE45 4.2 63.2 1.0
OH A:TYR36 4.3 54.3 1.0
O A:HOH314 4.4 52.5 1.0
ND1 A:HIS131 4.5 43.7 1.0
CA A:CYS42 4.6 45.6 1.0
C A:ILE45 4.6 61.5 1.0
CZ A:PHE39 4.6 42.7 1.0
CG A:HIS131 4.7 42.2 1.0
N A:PHE39 4.7 34.5 1.0
CA A:ILE45 4.8 60.3 1.0
CG A:PHE39 4.8 37.4 1.0
O A:PHE39 4.9 42.3 1.0
CA A:GLY38 4.9 34.5 1.0

Copper binding site 2 out of 3 in 6n5u

Go back to Copper Binding Sites List in 6n5u
Copper binding site 2 out of 3 in the Crystal Structure of Arabidopsis Thaliana Scoi with Copper Bound


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of Arabidopsis Thaliana Scoi with Copper Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cu201

b:44.2
occ:0.50
SG B:CYS46 2.2 58.0 1.0
NE2 B:HIS131 2.4 48.0 1.0
SG B:CYS42 2.6 58.1 1.0
CE1 B:HIS131 3.0 46.7 1.0
CB B:CYS42 3.5 54.5 1.0
CB B:CYS46 3.5 54.1 1.0
CD2 B:HIS131 3.6 48.6 1.0
N B:CYS46 3.7 54.3 1.0
CE1 B:PHE39 3.8 48.6 1.0
OH B:TYR36 3.9 51.0 1.0
CD1 B:PHE39 3.9 48.7 1.0
CG2 B:ILE45 4.0 58.9 1.0
CA B:CYS46 4.0 52.9 1.0
CB B:ILE45 4.1 59.9 1.0
ND1 B:HIS131 4.3 46.9 1.0
CG B:HIS131 4.5 46.0 1.0
CA B:GLY38 4.6 36.5 1.0
C B:ILE45 4.6 58.6 1.0
N B:PHE39 4.6 41.3 1.0
CA B:ILE45 4.8 56.8 1.0
CA B:CYS42 4.9 55.3 1.0
CZ B:PHE39 4.9 48.4 1.0
O B:PHE39 5.0 49.4 1.0

Copper binding site 3 out of 3 in 6n5u

Go back to Copper Binding Sites List in 6n5u
Copper binding site 3 out of 3 in the Crystal Structure of Arabidopsis Thaliana Scoi with Copper Bound


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of Arabidopsis Thaliana Scoi with Copper Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cu201

b:58.1
occ:0.50
SG C:CYS42 2.3 57.5 1.0
SG C:CYS46 2.3 60.0 1.0
NE2 C:HIS131 2.5 51.5 1.0
CB C:CYS42 3.0 52.6 1.0
CE1 C:HIS131 3.4 49.8 1.0
CD2 C:HIS131 3.5 53.3 1.0
CB C:CYS46 3.6 55.1 1.0
CE1 C:PHE39 3.6 48.9 1.0
N C:CYS46 3.7 56.1 1.0
CD1 C:PHE39 3.8 46.8 1.0
CB C:ILE45 4.1 62.7 1.0
CA C:CYS46 4.1 53.8 1.0
CG2 C:ILE45 4.2 62.2 1.0
CA C:CYS42 4.4 52.8 1.0
CZ C:PHE39 4.6 47.6 1.0
OH C:TYR36 4.6 51.4 1.0
ND1 C:HIS131 4.6 50.9 1.0
N C:PHE39 4.6 38.4 1.0
C C:ILE45 4.6 59.9 1.0
CG C:HIS131 4.6 51.1 1.0
O C:PHE39 4.8 39.8 1.0
CA C:GLY38 4.8 39.2 1.0
CA C:ILE45 4.8 58.4 1.0
CG C:PHE39 4.9 43.5 1.0

Reference:

M.E.Llases, M.N.Lisa, M.N.Morgada, E.Giannini, P.M.Alzari, A.J.Vila. Arabidopsis Thaliana HCC1 Is A Sco-Like Metallochaperone For Cuaassembly in Cytochrome C Oxidase. Febs J. 2019.
ISSN: ISSN 1742-464X
PubMed: 31348612
DOI: 10.1111/FEBS.15016
Page generated: Sun Dec 13 11:24:21 2020

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