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Copper in PDB 6mf2: Improved Model of Human Coagulation Factor VIII

Protein crystallography data

The structure of Improved Model of Human Coagulation Factor VIII, PDB code: 6mf2 was solved by I.W.Smith, P.C.Spiegel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 57.36 / 3.61
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 134.569, 134.569, 359.496, 90.00, 90.00, 90.00
R / Rfree (%) 25.2 / 28.4

Other elements in 6mf2:

The structure of Improved Model of Human Coagulation Factor VIII also contains other interesting chemical elements:

Calcium (Ca) 1 atom
Zinc (Zn) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the Improved Model of Human Coagulation Factor VIII (pdb code 6mf2). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Improved Model of Human Coagulation Factor VIII, PDB code: 6mf2:

Copper binding site 1 out of 1 in 6mf2

Go back to Copper Binding Sites List in 6mf2
Copper binding site 1 out of 1 in the Improved Model of Human Coagulation Factor VIII


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Improved Model of Human Coagulation Factor VIII within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu2412

b:27.3
occ:1.00
ND1 A:HIS1954 2.6 18.4 1.0
SG A:CYS2000 2.8 40.8 1.0
ND1 A:HIS2005 2.9 64.1 1.0
CD1 A:ILE2002 3.0 42.3 1.0
CG1 A:ILE2002 3.1 37.5 1.0
CE1 A:HIS1954 3.1 22.0 1.0
CG A:HIS2005 3.2 63.3 1.0
CB A:HIS2005 3.3 49.8 1.0
CG A:HIS1954 3.5 21.5 1.0
O A:CYS2000 3.7 26.6 1.0
CB A:CYS2000 3.7 33.6 1.0
CE1 A:HIS2005 3.7 60.1 1.0
CA A:HIS1954 3.9 25.2 1.0
CB A:HIS1954 4.1 23.8 1.0
NE2 A:HIS1954 4.1 26.3 1.0
CD2 A:HIS2005 4.1 65.4 1.0
CD2 A:HIS1954 4.3 26.3 1.0
NE2 A:HIS2005 4.4 65.1 1.0
N A:SER1955 4.4 22.5 1.0
CB A:ILE2002 4.6 35.2 1.0
C A:CYS2000 4.6 30.2 1.0
CA A:HIS2005 4.6 42.1 1.0
CA A:CYS2000 4.7 36.0 1.0
SD A:MET2010 4.7 39.1 1.0
C A:HIS1954 4.7 26.4 1.0
O A:ILE2002 4.7 34.6 1.0
C A:HIS2005 4.8 43.3 1.0
N A:HIS1954 4.8 34.6 1.0
O A:HIS2005 5.0 44.2 1.0

Reference:

I.W.Smith, A.E.D'aquino, C.W.Coyle, A.Fedanov, E.T.Parker, G.Denning, H.T.Spencer, P.Lollar, C.B.Doering, P.C.Spiegel Jr.. The 3.2 Angstrom Structure of A Bioengineered Variant of Blood Coagulation Factor VIII Indicates Two Conformations of the C2 Domain. J.Thromb.Haemost. 2019.
ISSN: ESSN 1538-7836
PubMed: 31454152
DOI: 10.1111/JTH.14621
Page generated: Sun Dec 13 11:24:15 2020

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