Copper in PDB 6kyy: Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli

The structure of Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli, PDB code: 6kyy was solved by Y.Baek, N.-C.Ha, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.24 / 2.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	72.694, 188.955, 95.056, 90.00, 107.62, 90.00
R / Rfree (%)	22.3 / 27.1

The structure of Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 32;

Binding sites:

The binding sites of Copper atom in the Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli (pdb code 6kyy). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 32 binding sites of Copper where determined in the Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli, PDB code: 6kyy:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Copper binding site 1 out of 32 in the Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu502 b:69.0 occ:1.00 NE2 A:HIS61 2.3 23.8 1.0 CE1 A:HIS61 3.2 22.0 1.0 CD2 A:HIS61 3.4 21.7 1.0 O A:GLN59 4.3 50.5 1.0 ND1 A:HIS61 4.3 23.2 1.0 CG A:HIS61 4.5 28.9 1.0

Copper binding site 2 out of 32 in the Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu503 b:68.0 occ:1.00 NE2 A:HIS84 2.7 43.5 1.0 CD2 A:HIS84 3.6 55.1 1.0 CE1 A:HIS84 3.7 45.7 1.0 CG A:HIS84 4.7 44.1 1.0 ND1 A:HIS84 4.7 38.7 1.0 OD1 A:ASP88 4.9 48.2 1.0

Copper binding site 3 out of 32 in the Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu504 b:0.8 occ:1.00 NE2 A:HIS235 2.0 55.2 1.0 CE1 A:HIS235 2.3 48.7 1.0 ND1 A:HIS238 2.9 86.6 1.0 CD2 A:HIS235 3.3 51.5 1.0 CA A:HIS238 3.3 0.1 1.0 N A:HIS238 3.3 98.9 1.0 ND1 A:HIS235 3.5 33.4 1.0 CE1 A:HIS238 3.7 87.1 1.0 CG A:HIS238 3.9 89.5 1.0 CG A:HIS235 4.0 64.2 1.0 CB A:HIS238 4.2 94.3 1.0 C A:HIS238 4.4 82.0 1.0 C A:GLU237 4.6 99.6 1.0 N A:ALA239 4.6 76.8 1.0 OE1 A:GLN240 4.7 43.8 1.0 NE2 A:HIS238 4.9 84.8 1.0

Copper binding site 4 out of 32 in the Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu505 b:79.5 occ:1.00 ND1 A:HIS160 2.2 45.3 1.0 CG A:HIS160 3.1 34.2 1.0 CE1 A:HIS160 3.2 38.3 1.0 CB A:HIS160 3.5 30.8 1.0 O A:ALA242 3.5 39.8 1.0 NE2 A:HIS160 4.2 29.2 1.0 CD2 A:HIS160 4.2 31.6 1.0 C A:ALA242 4.7 35.3 1.0 NE2 A:GLN231 4.7 36.8 1.0 CA A:HIS160 4.9 31.3 1.0

Copper binding site 5 out of 32 in the Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu506 b:0.6 occ:1.00 NE2 A:HIS110 2.1 51.5 1.0 CD2 A:HIS110 2.4 47.4 1.0 CE1 A:HIS110 3.4 43.2 1.0 CG A:HIS110 3.7 59.4 1.0 ND1 A:HIS110 4.1 48.4 1.0 CB A:HIS110 4.9 54.0 1.0

Copper binding site 6 out of 32 in the Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu507 b:79.2 occ:1.00 CD2 A:HIS119 3.0 98.0 1.0 NE2 A:HIS119 3.4 70.2 1.0 O A:GLU117 3.7 56.5 1.0 CG A:HIS119 4.3 91.3 1.0 CE1 A:HIS119 4.7 79.6 1.0 C A:GLU117 4.8 79.6 1.0 N A:HIS119 4.8 68.3 1.0

Copper binding site 7 out of 32 in the Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 7 of Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu508 b:87.8 occ:1.00 NE2 A:HIS260 2.1 45.0 1.0 CE1 A:HIS260 2.2 41.0 1.0 OG A:SER258 3.3 62.2 1.0 CD2 A:HIS260 3.5 60.5 1.0 ND1 A:HIS260 3.5 66.1 1.0 CG A:HIS260 4.1 77.9 1.0 CB A:SER258 4.3 72.6 1.0 CA A:SER258 4.5 75.5 1.0 OE2 A:GLU100 4.5 63.4 1.0

Copper binding site 8 out of 32 in the Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 8 of Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu509 b:0.6 occ:1.00 OG1 A:THR300 1.9 59.3 1.0 SG A:CYS48 2.3 53.6 1.0 SG A:CYS43 2.3 52.0 1.0 CB A:CYS43 2.7 56.5 1.0 NE2 B:HIS426 2.8 41.9 1.0 CD2 B:HIS426 2.8 38.5 1.0 CB A:THR300 2.8 41.3 1.0 CG2 A:THR300 3.3 31.8 1.0 CB A:CYS48 3.6 35.2 1.0 CA A:CYS43 3.9 46.4 1.0 CE1 B:HIS426 4.1 20.6 1.0 CG B:HIS426 4.1 29.4 1.0 CA A:THR300 4.2 37.3 1.0 N1 A:FAD501 4.2 36.5 1.0 C2' A:FAD501 4.3 44.9 1.0 C2 A:FAD501 4.3 40.1 1.0 O2 A:FAD501 4.5 41.1 1.0 O2' A:FAD501 4.5 47.7 1.0 N A:THR300 4.6 51.0 1.0 O4' A:FAD501 4.6 40.9 1.0 C10 A:FAD501 4.6 33.6 1.0 N A:CYS48 4.6 42.6 1.0 C A:CYS43 4.7 54.3 1.0 ND1 B:HIS426 4.7 38.3 1.0 C4' A:FAD501 4.7 47.8 1.0 CA A:CYS48 4.7 42.4 1.0 N3 A:FAD501 4.8 39.1 1.0 N A:CYS43 4.9 42.2 1.0 O A:CYS43 4.9 28.8 1.0

Copper binding site 9 out of 32 in the Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 9 of Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu502 b:72.5 occ:1.00 NE2 B:HIS105 3.6 33.0 1.0 CE1 B:HIS105 4.1 39.8 1.0 ND2 B:ASN104 4.2 52.2 1.0 OD1 B:ASN104 4.7 39.1 1.0 CD2 B:HIS105 4.8 26.2 1.0 CG B:ASN104 4.9 36.5 1.0

Copper binding site 10 out of 32 in the Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 10 of Cu(II) Complex of Hocl-Induced Flavoprotein Disulfide Reductase Rcla From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu503 b:51.7 occ:1.00 CE1 B:HIS260 2.1 28.4 1.0 NE2 B:HIS260 2.5 25.4 1.0 ND1 B:HIS260 3.3 41.4 1.0 CD2 B:HIS260 3.8 20.3 1.0 CG B:HIS260 4.2 23.5 1.0 OE2 B:GLU100 4.4 25.9 1.0 CA B:SER258 4.5 37.0 1.0 O B:ALA257 4.6 32.3 1.0 O B:SER258 4.8 36.0 1.0

Y.Baek, J.Kim, J.Ahn, I.Jo, S.Hong, S.Ryu, N.-C.Ha. Structure and Function of the Hypochlorous Acid-Induced Flavoprotein Rcla From Escherichia Coli J.Biol.Chem. 2020.
ISSN: ESSN 1083-351X