Copper in PDB 6km8: Crystal Structure of Momordica Charantia 7S Globulin

The structure of Crystal Structure of Momordica Charantia 7S Globulin, PDB code: 6km8 was solved by P.Kesari, S.Pratap, P.Dhankhar, V.Dalal, P.Kumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.38 / 3.10
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	90.765, 90.765, 68.476, 90.00, 90.00, 120.00
R / Rfree (%)	19.1 / 27.8

The binding sites of Copper atom in the Crystal Structure of Momordica Charantia 7S Globulin (pdb code 6km8). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Crystal Structure of Momordica Charantia 7S Globulin, PDB code: 6km8:

Copper binding site 1 out of 1 in the Crystal Structure of Momordica Charantia 7S Globulin


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of Momordica Charantia 7S Globulin within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu501 b:66.7 occ:1.00 NE2 A:HIS355 2.0 43.4 1.0 SG A:CYS321 2.4 61.7 1.0 CE1 A:HIS355 2.7 38.3 1.0 ND1 A:HIS323 2.9 65.1 1.0 OH A:TYR49 3.0 63.3 1.0 CD2 A:HIS355 3.2 39.3 1.0 CB A:CYS321 3.2 58.4 1.0 CD A:PRO322 3.4 55.3 1.0 CE1 A:HIS323 3.6 67.3 1.0 CA A:CYS321 3.6 54.1 1.0 ND1 A:HIS355 3.9 36.7 1.0 N A:PRO322 4.0 58.5 1.0 CZ A:TYR49 4.0 50.7 1.0 CG A:HIS323 4.0 65.0 1.0 N A:HIS323 4.1 62.8 1.0 CG A:HIS355 4.2 41.6 1.0 C A:CYS321 4.2 58.1 1.0 CE2 A:TYR49 4.3 54.2 1.0 CB A:HIS323 4.3 64.4 1.0 CG A:PRO322 4.6 58.2 1.0 O A:ALA320 4.8 47.0 1.0 NE2 A:HIS323 4.8 71.5 1.0 CA A:HIS323 4.8 67.4 1.0 N A:CYS321 4.9 55.5 1.0 CA A:PRO322 4.9 62.7 1.0

P.Kesari, S.Pratap, P.Dhankhar, V.Dalal, M.Mishra, P.K.Singh, H.Chauhan, P.Kumar. Structural Characterization and in-Silico Analysis of Momordica Charantia 7S Globulin For Stability and Ace Inhibition. Sci Rep V. 10 1160 2020.
ISSN: ESSN 2045-2322
PubMed: 31980708
DOI: 10.1038/S41598-020-58138-9