Copper in PDB 6kli: Crystal Structure of the Zea Mays Laccase 3 Complexed with Sinapyl

All present enzymatic activity of Crystal Structure of the Zea Mays Laccase 3 Complexed with Sinapyl:
1.10.3.2;

The structure of Crystal Structure of the Zea Mays Laccase 3 Complexed with Sinapyl, PDB code: 6kli was solved by T.Xie, Z.C.Liu, G.G.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.68 / 1.80
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	112.213, 112.213, 207.562, 90.00, 90.00, 120.00
R / Rfree (%)	17.5 / 20.1

The binding sites of Copper atom in the Crystal Structure of the Zea Mays Laccase 3 Complexed with Sinapyl (pdb code 6kli). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Crystal Structure of the Zea Mays Laccase 3 Complexed with Sinapyl, PDB code: 6kli:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in the Crystal Structure of the Zea Mays Laccase 3 Complexed with Sinapyl


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of the Zea Mays Laccase 3 Complexed with Sinapyl within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu601 b:16.6 occ:1.00 ND1 A:HIS519 2.1 15.8 1.0 ND1 A:HIS451 2.1 17.2 1.0 SG A:CYS514 2.2 15.0 1.0 CE1 A:HIS519 3.0 18.8 1.0 SD A:MET524 3.0 17.1 1.0 CE1 A:HIS451 3.1 19.2 1.0 CG A:HIS451 3.1 17.4 1.0 CG A:HIS519 3.1 16.1 1.0 CB A:CYS514 3.2 16.1 1.0 CB A:HIS451 3.4 15.6 1.0 CB A:HIS519 3.5 14.8 1.0 CD2 A:PHE516 3.5 14.6 1.0 CE A:MET524 3.7 16.9 1.0 CA A:HIS451 4.1 15.8 1.0 NE2 A:HIS519 4.2 17.2 1.0 NE2 A:HIS451 4.2 18.0 1.0 CB A:PHE516 4.2 16.4 1.0 CG A:PHE516 4.2 14.7 1.0 CD2 A:HIS451 4.2 18.2 1.0 CD2 A:HIS519 4.2 16.6 1.0 CE2 A:PHE516 4.3 18.7 1.0 CD A:PRO452 4.6 14.8 1.0 CA A:CYS514 4.6 12.9 1.0 CG A:MET524 4.7 14.1 1.0 C A:HIS451 5.0 15.9 1.0 CA A:HIS519 5.0 13.8 1.0

Copper binding site 2 out of 4 in the Crystal Structure of the Zea Mays Laccase 3 Complexed with Sinapyl


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of the Zea Mays Laccase 3 Complexed with Sinapyl within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu602 b:17.1 occ:1.00 NE2 A:HIS59 2.0 13.9 1.0 NE2 A:HIS454 2.0 13.7 1.0 O A:HOH962 2.5 16.1 1.0 CE1 A:HIS59 2.9 15.5 1.0 O1 A:OXY616 3.0 19.8 1.0 CD2 A:HIS454 3.0 13.7 1.0 CD2 A:HIS59 3.0 14.7 1.0 CE1 A:HIS454 3.0 15.5 1.0 NE2 A:HIS456 3.3 14.0 1.0 CD2 A:HIS456 3.3 15.4 1.0 ND1 A:HIS61 3.4 13.0 1.0 CG A:HIS61 3.7 13.6 1.0 CE1 A:HIS456 3.8 14.9 1.0 CG A:HIS456 3.8 13.3 1.0 CA A:HIS61 3.8 14.8 1.0 CE1 A:HIS61 3.9 13.6 1.0 CU A:CU604 3.9 19.0 1.0 CU A:CU603 4.0 18.7 1.0 N A:GLY62 4.0 13.7 1.0 ND1 A:HIS456 4.0 13.9 1.0 ND1 A:HIS59 4.0 13.2 1.0 CB A:HIS61 4.1 13.2 1.0 CG A:HIS59 4.1 13.0 1.0 ND1 A:HIS454 4.1 14.2 1.0 CG A:HIS454 4.1 15.7 1.0 O2 A:OXY616 4.1 27.1 1.0 CD2 A:HIS61 4.4 14.3 1.0 NE2 A:HIS61 4.4 12.9 1.0 C A:HIS61 4.4 13.6 1.0 CA A:HIS456 4.6 13.0 1.0 O A:HOH798 4.6 14.9 1.0 CB A:HIS456 4.7 14.1 1.0 O A:HOH789 4.8 14.8 1.0 N A:HIS61 4.8 14.0 1.0 N A:HIS456 4.9 14.0 1.0 O A:TRP60 5.0 14.7 1.0

Copper binding site 3 out of 4 in the Crystal Structure of the Zea Mays Laccase 3 Complexed with Sinapyl


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of the Zea Mays Laccase 3 Complexed with Sinapyl within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu603 b:18.7 occ:1.00 O1 A:OXY616 2.0 19.8 1.0 NE2 A:HIS513 2.0 15.9 1.0 NE2 A:HIS456 2.0 14.0 1.0 NE2 A:HIS106 2.1 13.3 1.0 O2 A:OXY616 2.2 27.1 1.0 CE1 A:HIS456 2.9 14.9 1.0 CE1 A:HIS513 2.9 18.4 1.0 CD2 A:HIS513 3.0 15.9 1.0 CD2 A:HIS106 3.1 16.1 1.0 CE1 A:HIS106 3.1 17.5 1.0 CD2 A:HIS456 3.1 15.4 1.0 CD2 A:HIS454 3.8 13.7 1.0 CU A:CU602 4.0 17.1 1.0 ND1 A:HIS513 4.0 15.4 1.0 ND1 A:HIS456 4.0 13.9 1.0 CG A:HIS513 4.1 13.8 1.0 CG A:HIS456 4.2 13.3 1.0 CD2 A:PHE511 4.2 16.3 1.0 ND1 A:HIS106 4.2 15.3 1.0 CG A:HIS106 4.2 14.2 1.0 O3 A:GOL614 4.4 23.9 1.0 NE2 A:HIS454 4.4 13.7 1.0 CD2 A:HIS59 4.4 14.7 1.0 NE2 A:HIS59 4.4 13.9 1.0 C3 A:GOL614 4.4 23.5 1.0 CU A:CU604 4.7 19.0 1.0 CE1 A:HIS104 4.9 15.4 1.0 CE2 A:PHE511 4.9 18.3 1.0

Copper binding site 4 out of 4 in the Crystal Structure of the Zea Mays Laccase 3 Complexed with Sinapyl


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of the Zea Mays Laccase 3 Complexed with Sinapyl within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu604 b:19.0 occ:1.00 ND1 A:HIS61 2.0 13.0 1.0 NE2 A:HIS104 2.1 12.9 1.0 NE2 A:HIS515 2.1 13.1 1.0 O1 A:OXY616 2.7 19.8 1.0 O2 A:OXY616 2.8 27.1 1.0 CE1 A:HIS61 2.8 13.6 1.0 CE1 A:HIS104 3.0 15.4 1.0 CE1 A:HIS515 3.0 16.1 1.0 CG A:HIS61 3.0 13.6 1.0 CD2 A:HIS104 3.1 14.1 1.0 CD2 A:HIS515 3.2 14.0 1.0 CB A:HIS61 3.5 13.2 1.0 CZ2 A:TRP102 3.7 13.2 1.0 CU A:CU602 3.9 17.1 1.0 NE2 A:HIS61 4.0 12.9 1.0 CD2 A:HIS59 4.1 14.7 1.0 CD2 A:HIS61 4.1 14.3 1.0 ND1 A:HIS104 4.1 14.4 1.0 CE2 A:TRP102 4.2 15.3 1.0 ND1 A:HIS515 4.2 14.0 1.0 CG A:HIS104 4.2 13.4 1.0 CD2 A:HIS454 4.3 13.7 1.0 CG A:HIS515 4.3 13.7 1.0 NE2 A:HIS454 4.3 13.7 1.0 CH2 A:TRP102 4.4 15.7 1.0 NE1 A:TRP102 4.4 16.2 1.0 NE2 A:HIS59 4.5 13.9 1.0 CA A:HIS61 4.6 14.8 1.0 CU A:CU603 4.7 18.7 1.0 O3 A:GOL614 4.7 23.9 1.0 CA A:GLY242 4.7 13.7 1.0

T.Xie, Z.C.Liu, G.G.Wang. Crystal Structure of Zea Mays Laccase 3 Complexed with Sinapyl at 1.8 Angstroms Resolution To Be Published.