Copper in PDB 6klg: Crystal Structure of the Zea Mays Laccase 3

All present enzymatic activity of Crystal Structure of the Zea Mays Laccase 3:
1.10.3.2;

The structure of Crystal Structure of the Zea Mays Laccase 3, PDB code: 6klg was solved by T.Xie, Z.C.Liu, G.G.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.48 / 2.10
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	111.977, 111.977, 208.094, 90.00, 90.00, 120.00
R / Rfree (%)	16.4 / 20

The binding sites of Copper atom in the Crystal Structure of the Zea Mays Laccase 3 (pdb code 6klg). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Crystal Structure of the Zea Mays Laccase 3, PDB code: 6klg:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in the Crystal Structure of the Zea Mays Laccase 3


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of the Zea Mays Laccase 3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu601 b:14.5 occ:1.00 ND1 A:HIS451 2.0 12.6 1.0 ND1 A:HIS519 2.1 15.3 1.0 SG A:CYS514 2.2 11.9 1.0 CE1 A:HIS451 3.0 17.6 1.0 SD A:MET524 3.0 14.2 1.0 CE1 A:HIS519 3.0 15.4 1.0 CG A:HIS451 3.0 13.8 1.0 CG A:HIS519 3.1 14.5 1.0 CB A:CYS514 3.2 11.2 1.0 CB A:HIS451 3.4 10.9 1.0 CB A:HIS519 3.5 11.3 1.0 CD2 A:PHE516 3.6 15.4 1.0 CE A:MET524 3.7 14.8 1.0 CA A:HIS451 4.1 14.5 1.0 NE2 A:HIS451 4.1 16.1 1.0 NE2 A:HIS519 4.1 13.8 1.0 CD2 A:HIS451 4.2 16.0 1.0 CD2 A:HIS519 4.2 12.9 1.0 CB A:PHE516 4.2 15.2 1.0 CG A:PHE516 4.3 16.2 1.0 CE2 A:PHE516 4.4 17.1 1.0 CA A:CYS514 4.6 10.9 1.0 CG A:MET524 4.7 12.9 1.0 CD A:PRO452 4.7 15.4 1.0 C A:HIS451 5.0 16.9 1.0 CA A:HIS519 5.0 13.1 1.0

Copper binding site 2 out of 4 in the Crystal Structure of the Zea Mays Laccase 3


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Crystal Structure of the Zea Mays Laccase 3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu602 b:16.0 occ:1.00 NE2 A:HIS454 2.0 13.8 1.0 NE2 A:HIS59 2.1 13.2 1.0 O A:HOH841 2.2 13.8 1.0 O1 A:OXY605 2.7 16.6 1.0 CD2 A:HIS454 3.0 10.0 1.0 CE1 A:HIS454 3.0 11.8 1.0 CD2 A:HIS59 3.0 12.3 1.0 CE1 A:HIS59 3.1 12.6 1.0 CD2 A:HIS456 3.3 9.7 1.0 NE2 A:HIS456 3.4 12.7 1.0 ND1 A:HIS61 3.5 12.2 1.0 CG A:HIS456 3.7 12.2 1.0 CG A:HIS61 3.7 12.8 1.0 CA A:HIS61 3.7 15.8 1.0 CU A:CU603 3.8 16.3 1.0 CU A:CU604 3.8 18.3 1.0 CE1 A:HIS456 3.8 12.4 1.0 N A:GLY62 3.9 12.7 1.0 O2 A:OXY605 4.0 13.5 1.0 CE1 A:HIS61 4.0 9.1 1.0 CB A:HIS61 4.0 10.0 1.0 ND1 A:HIS456 4.1 12.7 1.0 ND1 A:HIS454 4.1 10.7 1.0 CG A:HIS454 4.1 14.6 1.0 ND1 A:HIS59 4.1 13.2 1.0 CG A:HIS59 4.2 13.0 1.0 CD2 A:HIS61 4.3 11.9 1.0 C A:HIS61 4.4 13.4 1.0 CA A:HIS456 4.5 11.3 1.0 NE2 A:HIS61 4.5 14.7 1.0 O A:HOH964 4.5 13.3 1.0 CB A:HIS456 4.6 10.4 1.0 O A:HOH773 4.6 13.1 1.0 N A:HIS61 4.8 12.3 1.0 N A:HIS456 4.8 10.4 1.0 O A:TRP60 4.9 13.6 1.0

Copper binding site 3 out of 4 in the Crystal Structure of the Zea Mays Laccase 3


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Crystal Structure of the Zea Mays Laccase 3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu603 b:16.3 occ:1.00 O1 A:OXY605 2.0 16.6 1.0 O2 A:OXY605 2.0 13.5 1.0 NE2 A:HIS456 2.1 12.7 1.0 NE2 A:HIS513 2.1 11.5 1.0 NE2 A:HIS106 2.1 13.8 1.0 CE1 A:HIS513 3.0 12.3 1.0 CE1 A:HIS456 3.0 12.4 1.0 CD2 A:HIS106 3.1 10.9 1.0 CD2 A:HIS456 3.1 9.7 1.0 CE1 A:HIS106 3.2 12.8 1.0 CD2 A:HIS513 3.2 14.0 1.0 CD2 A:HIS454 3.6 10.0 1.0 CU A:CU602 3.8 16.0 1.0 CU A:CU604 3.8 18.3 1.0 O A:HOH1085 4.1 15.8 1.0 ND1 A:HIS513 4.1 11.8 1.0 ND1 A:HIS456 4.1 12.7 1.0 NE2 A:HIS454 4.1 13.8 1.0 CG A:HIS456 4.2 12.2 1.0 CG A:HIS106 4.2 12.6 1.0 ND1 A:HIS106 4.2 12.1 1.0 CG A:HIS513 4.2 12.1 1.0 CD2 A:HIS59 4.3 12.3 1.0 NE2 A:HIS59 4.3 13.2 1.0 CE1 A:HIS104 4.5 12.3 1.0 NE2 A:HIS515 4.6 11.6 1.0 CD2 A:PHE511 4.6 11.8 1.0 NE2 A:HIS104 4.7 12.7 1.0 CD2 A:HIS515 4.8 12.4 1.0 CG A:HIS454 4.8 14.6 1.0 CG A:HIS59 5.0 13.0 1.0

Copper binding site 4 out of 4 in the Crystal Structure of the Zea Mays Laccase 3


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Crystal Structure of the Zea Mays Laccase 3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu604 b:18.3 occ:1.00 O1 A:OXY605 2.0 16.6 1.0 O2 A:OXY605 2.0 13.5 1.0 ND1 A:HIS61 2.1 12.2 1.0 NE2 A:HIS515 2.1 11.6 1.0 NE2 A:HIS104 2.2 12.7 1.0 CE1 A:HIS61 2.9 9.1 1.0 CE1 A:HIS515 3.0 10.8 1.0 CD2 A:HIS515 3.1 12.4 1.0 CE1 A:HIS104 3.1 12.3 1.0 CG A:HIS61 3.2 12.8 1.0 CD2 A:HIS104 3.3 12.2 1.0 CB A:HIS61 3.7 10.0 1.0 CU A:CU602 3.8 16.0 1.0 CU A:CU603 3.8 16.3 1.0 CD2 A:HIS454 4.0 10.0 1.0 NE2 A:HIS61 4.1 14.7 1.0 NE2 A:HIS454 4.1 13.8 1.0 CZ2 A:TRP102 4.1 11.6 1.0 CD2 A:HIS59 4.1 12.3 1.0 ND1 A:HIS515 4.1 11.3 1.0 CG A:HIS515 4.2 12.2 1.0 CD2 A:HIS61 4.2 11.9 1.0 ND1 A:HIS104 4.3 12.4 1.0 CG A:HIS104 4.4 11.9 1.0 O A:HOH1085 4.5 15.8 1.0 NE2 A:HIS59 4.5 13.2 1.0 CE2 A:TRP102 4.6 13.2 1.0 CH2 A:TRP102 4.7 10.9 1.0 CA A:HIS61 4.7 15.8 1.0 NE1 A:TRP102 4.8 12.7 1.0 CG A:HIS454 4.8 14.6 1.0 CA A:GLY242 4.9 10.6 1.0 CE1 A:HIS513 4.9 12.3 1.0 NE2 A:HIS513 5.0 11.5 1.0 CE1 A:HIS454 5.0 11.8 1.0

T.Xie, Z.C.Liu, G.G.Wang. Crystal Structure of Zea Mays Laccase 3 at 2.1 Angstroms Resolution To Be Published.