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Copper in PDB 6if7: Crystal Structure of AA10 Lytic Polysaccharide Monooxygenase From Tectaria Macrodonta

Protein crystallography data

The structure of Crystal Structure of AA10 Lytic Polysaccharide Monooxygenase From Tectaria Macrodonta, PDB code: 6if7 was solved by A.Archana, S.K.Yadav, P.K.Singh, P.G.Vasudev, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.02 / 2.20
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.221, 79.221, 68.239, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 22.9

Other elements in 6if7:

The structure of Crystal Structure of AA10 Lytic Polysaccharide Monooxygenase From Tectaria Macrodonta also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the Crystal Structure of AA10 Lytic Polysaccharide Monooxygenase From Tectaria Macrodonta (pdb code 6if7). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Crystal Structure of AA10 Lytic Polysaccharide Monooxygenase From Tectaria Macrodonta, PDB code: 6if7:

Copper binding site 1 out of 1 in 6if7

Go back to Copper Binding Sites List in 6if7
Copper binding site 1 out of 1 in the Crystal Structure of AA10 Lytic Polysaccharide Monooxygenase From Tectaria Macrodonta


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Crystal Structure of AA10 Lytic Polysaccharide Monooxygenase From Tectaria Macrodonta within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu250

b:38.5
occ:1.00
ND1 A:HIS25 2.1 37.4 1.0
NE2 A:HIS127 2.1 37.6 1.0
N A:HIS25 2.1 32.6 1.0
CG A:HIS25 3.0 35.0 1.0
CA A:HIS25 3.0 30.0 1.0
CE1 A:HIS127 3.1 38.5 1.0
CD2 A:HIS127 3.1 38.5 1.0
CE1 A:HIS25 3.1 37.6 1.0
CB A:HIS25 3.2 31.8 1.0
CZ A:PHE198 3.4 28.3 1.0
O4 A:SO4252 3.9 54.0 0.5
CE1 A:PHE198 4.1 29.4 1.0
ND1 A:HIS127 4.2 36.7 1.0
CD2 A:HIS25 4.2 36.3 1.0
O A:ALA125 4.2 35.5 1.0
CG A:HIS127 4.2 37.2 1.0
NE2 A:HIS25 4.2 37.6 1.0
CE2 A:PHE198 4.2 28.2 1.0
CB A:ALA125 4.2 36.8 1.0
OE1 A:GLU196 4.3 38.5 1.0
C A:HIS25 4.4 28.2 1.0
NH1 A:ARG191 4.7 33.5 1.0
O A:HIS25 4.9 24.7 1.0

Reference:

S.K.Yadav, R.Singh, P.K.Singh, P.G.Vasudev. Insecticidal Fern Protein TMA12 Is Possibly A Lytic Polysaccharide Monooxygenase. Planta V. 249 1987 2019.
ISSN: ISSN 0032-0935
PubMed: 30903269
DOI: 10.1007/S00425-019-03135-0
Page generated: Sun Dec 13 11:23:07 2020

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