Copper in PDB 6ibi: Copper Binding Protein From Laetisaria Arvalis (LAX325)

The structure of Copper Binding Protein From Laetisaria Arvalis (LAX325), PDB code: 6ibi was solved by K.E.H.Frandsen, T.Tandrup, A.Labourel, M.Haon, J.-G.Berrin, L.Lo Leggio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.35 / 2.08
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	84.599, 84.635, 127.319, 90.00, 90.00, 90.00
R / Rfree (%)	24.4 / 27.1

The binding sites of Copper atom in the Copper Binding Protein From Laetisaria Arvalis (LAX325) (pdb code 6ibi). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 4 binding sites of Copper where determined in the Copper Binding Protein From Laetisaria Arvalis (LAX325), PDB code: 6ibi:
Jump to Copper binding site number: 1; 2; 3; 4;

Copper binding site 1 out of 4 in the Copper Binding Protein From Laetisaria Arvalis (LAX325)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Copper Binding Protein From Laetisaria Arvalis (LAX325) within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu201 b:42.0 occ:1.00 OD2 A:ASP122 2.0 52.0 1.0 ND1 A:HIS1 2.0 41.0 1.0 N A:HIS1 2.0 51.7 1.0 NE2 A:HIS49 2.1 39.6 1.0 O A:HOH367 2.5 52.7 1.0 CG A:ASP122 2.8 49.3 1.0 OD1 A:ASP122 2.9 58.0 1.0 CE1 A:HIS1 3.0 36.6 1.0 CG A:HIS1 3.0 36.4 1.0 CD2 A:HIS49 3.1 34.0 1.0 CE1 A:HIS49 3.1 33.0 1.0 CA A:HIS1 3.1 42.7 1.0 CB A:HIS1 3.4 37.9 1.0 O B:HOH354 3.9 62.8 1.0 NE2 A:HIS1 4.1 38.6 1.0 ND1 A:HIS49 4.2 37.1 1.0 CD2 A:HIS1 4.2 36.4 1.0 CG A:HIS49 4.2 36.3 1.0 CB A:ASP122 4.2 43.6 1.0 CD1 A:LEU125 4.2 34.8 1.0 C A:HIS1 4.5 42.5 1.0 OH A:TYR118 4.6 34.9 1.0 O A:HOH462 4.6 54.1 1.0 CE1 A:TYR118 4.6 31.7 1.0 O A:HIS1 4.7 41.8 1.0 O A:HOH312 4.9 29.7 1.0

Copper binding site 2 out of 4 in the Copper Binding Protein From Laetisaria Arvalis (LAX325)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Copper Binding Protein From Laetisaria Arvalis (LAX325) within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu201 b:41.8 occ:1.00 NE2 B:HIS49 2.0 38.2 1.0 OD2 B:ASP122 2.0 46.2 1.0 N B:HIS1 2.0 43.6 1.0 ND1 B:HIS1 2.1 40.4 1.0 CG B:ASP122 2.8 41.7 1.0 CD2 B:HIS49 3.0 40.9 1.0 OD1 B:ASP122 3.0 46.2 1.0 CE1 B:HIS1 3.0 43.3 1.0 CG B:HIS1 3.1 38.3 1.0 CE1 B:HIS49 3.1 37.5 1.0 CA B:HIS1 3.1 33.6 1.0 CB B:HIS1 3.4 37.4 1.0 O B:HOH304 3.6 50.2 1.0 CG B:HIS49 4.1 31.7 1.0 ND1 B:HIS49 4.2 31.4 1.0 NE2 B:HIS1 4.2 38.1 1.0 CD2 B:HIS1 4.2 39.8 1.0 CB B:ASP122 4.3 40.5 1.0 C B:HIS1 4.4 34.6 1.0 CD1 B:LEU125 4.4 30.1 1.0 OH B:TYR118 4.6 32.8 1.0 O B:HIS1 4.7 32.4 1.0 CE1 B:TYR118 4.7 31.0 1.0

Copper binding site 3 out of 4 in the Copper Binding Protein From Laetisaria Arvalis (LAX325)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Copper Binding Protein From Laetisaria Arvalis (LAX325) within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu201 b:35.6 occ:1.00 ND1 C:HIS1 2.0 39.5 1.0 NE2 C:HIS49 2.0 34.6 1.0 OD2 C:ASP122 2.1 34.6 1.0 N C:HIS1 2.1 42.2 1.0 O C:HOH366 2.3 39.3 1.0 CG C:ASP122 2.9 32.8 1.0 OD1 C:ASP122 3.0 28.3 1.0 CD2 C:HIS49 3.0 34.2 1.0 CE1 C:HIS1 3.0 39.6 1.0 CG C:HIS1 3.0 37.4 1.0 CE1 C:HIS49 3.1 31.9 1.0 CA C:HIS1 3.2 34.1 1.0 CB C:HIS1 3.4 33.9 1.0 O C:HOH423 4.1 44.2 1.0 NE2 C:HIS1 4.1 37.3 1.0 CD2 C:HIS1 4.1 35.1 1.0 CG C:HIS49 4.1 30.6 1.0 ND1 C:HIS49 4.1 30.8 1.0 O C:HOH422 4.2 55.5 1.0 CB C:ASP122 4.3 33.6 1.0 CD1 C:LEU125 4.4 29.1 1.0 C C:HIS1 4.5 33.4 1.0 OH C:TYR118 4.6 30.4 1.0 O C:HOH303 4.7 24.7 1.0 O C:HIS1 4.7 35.6 1.0 CE1 C:TYR118 4.8 30.4 1.0

Copper binding site 4 out of 4 in the Copper Binding Protein From Laetisaria Arvalis (LAX325)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Copper Binding Protein From Laetisaria Arvalis (LAX325) within 5.0Å range: probe atom residue distance (Å) B Occ D:Cu201 b:71.8 occ:1.00 ND1 D:HIS1 2.0 60.3 1.0 OD2 D:ASP122 2.0 83.3 1.0 N D:HIS1 2.0 61.2 1.0 NE2 D:HIS49 2.0 62.9 1.0 CG D:ASP122 2.9 77.5 1.0 CD2 D:HIS49 3.0 57.1 1.0 CE1 D:HIS1 3.0 61.2 1.0 CG D:HIS1 3.0 56.5 1.0 OD1 D:ASP122 3.1 84.3 1.0 CA D:HIS1 3.1 57.2 1.0 CE1 D:HIS49 3.1 64.0 1.0 CB D:HIS1 3.3 56.1 1.0 O D:HOH373 3.5 50.3 1.0 O D:HOH313 3.9 69.4 1.0 NE2 D:HIS1 4.1 57.0 1.0 CD2 D:HIS1 4.1 56.5 1.0 CG D:HIS49 4.2 58.0 1.0 ND1 D:HIS49 4.2 57.5 1.0 CB D:ASP122 4.3 72.9 1.0 C D:HIS1 4.4 53.0 1.0 CD2 D:LEU125 4.6 64.1 1.0 OH D:TYR118 4.6 55.3 1.0 O D:HIS1 4.7 52.0 1.0 CE1 D:TYR118 4.8 61.4 1.0 O D:HOH305 5.0 55.2 1.0

A.Labourel, K.E.H.Frandsen, T.Tandrup, D.Navarro, M.Haon, S.Grisel, M.-N.Rosso, N.Brouilly, B.Cathala, A.Villares, M.Fanuel, H.Rogniaux, L.Ciano, P.Walton, F.Zhang, F.Martin, B.Henrissat, L.Lo Leggio, J.-G.Berrin. Auxiliary Activity Cazyme To Be Published.