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Copper in PDB 6hy8: Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)

Enzymatic activity of Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)

All present enzymatic activity of Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl):
3.2.1.17;

Protein crystallography data

The structure of Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl), PDB code: 6hy8 was solved by L.Vandebroek, L.Van Meervelt, T.N.Parac-Vogt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.42 / 1.22
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.841, 78.841, 37.193, 90.00, 90.00, 90.00
R / Rfree (%) 13.8 / 15.5

Other elements in 6hy8:

The structure of Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) also contains other interesting chemical elements:

Tungsten (W) 17 atoms
Potassium (K) 1 atom
Chlorine (Cl) 4 atoms
Sodium (Na) 1 atom

Copper Binding Sites:

The binding sites of Copper atom in the Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) (pdb code 6hy8). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total only one binding site of Copper was determined in the Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl), PDB code: 6hy8:

Copper binding site 1 out of 1 in 6hy8

Go back to Copper Binding Sites List in 6hy8
Copper binding site 1 out of 1 in the Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl)


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Cu(II)-Substituted Wells-Dawson Binding to Hen Egg-White Lysozyme (Hewl) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cu201

b:8.5
occ:0.16
CU1 A:GXW201 0.0 8.5 0.2
O57 A:GXW201 2.3 15.4 0.2
O48 A:GXW201 2.3 10.3 0.2
O60 A:GXW201 2.3 13.1 0.2
O52 A:GXW201 2.3 11.4 0.2
O59 A:GXW201 2.7 11.2 0.2
W16 A:GXW201 3.5 11.2 0.2
W17 A:GXW201 3.5 10.7 0.2
P2 A:GXW201 3.8 9.5 0.2
W13 A:GXW201 3.8 12.0 0.2
O58 A:GXW201 3.8 9.4 0.2
W14 A:GXW201 3.8 11.2 0.2
O A:HOH303 3.9 25.1 1.0
O49 A:GXW201 3.9 16.0 0.2
O46 A:GXW201 4.0 9.6 0.2
O45 A:GXW201 4.0 12.4 0.2
O A:HOH357 4.0 19.4 1.0
O53 A:GXW201 4.1 13.3 0.2
O55 A:GXW201 4.1 11.9 0.2
O43 A:GXW201 4.6 12.8 0.2
O47 A:GXW201 4.7 8.3 0.2
O50 A:GXW201 4.8 9.6 0.2
O51 A:GXW201 4.8 11.8 0.2
O56 A:GXW201 4.8 9.9 0.2
O61 A:GXW201 4.9 12.5 0.2

Reference:

L.Vandebroek, Y.Mampaey, S.Antonyuk, L.Van Meervelt, T.N.Parac-Vogt. Noncovalent Complexes Formed Between Metal-Substituted Polyoxometalates and Hen Egg White Lysozyme Eur J Inorg Chem 2019.
ISSN: ESSN 1099-0682
DOI: 10.1002/EJIC.201801113
Page generated: Sun Dec 13 11:22:52 2020

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