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Copper in PDB 6hwh: Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis

Enzymatic activity of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis

All present enzymatic activity of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis:
1.10.2.2; 1.9.3.1;

Other elements in 6hwh:

The structure of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis also contains other interesting chemical elements:

Iron (Fe) 16 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis (pdb code 6hwh). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 6 binding sites of Copper where determined in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis, PDB code: 6hwh:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6;

Copper binding site 1 out of 6 in 6hwh

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Copper binding site 1 out of 6 in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Cu401

b:71.2
occ:1.00
CU P:CU402 2.2 82.9 1.0
ND1 P:HIS281 2.3 51.6 1.0
SG P:CYS277 2.4 50.0 1.0
SG P:CYS273 2.4 51.8 1.0
SD P:MET284 2.8 55.3 1.0
CE1 P:HIS281 3.0 51.6 1.0
CB P:CYS273 3.0 51.8 1.0
CG P:HIS281 3.4 51.6 1.0
CB P:CYS277 3.4 50.0 1.0
O P:HIS281 3.6 51.6 1.0
CA P:HIS281 3.7 51.6 1.0
CB P:HIS281 3.8 51.6 1.0
O P:GLU275 3.8 50.1 1.0
CE P:MET284 3.9 55.3 1.0
CG P:MET284 4.0 55.3 1.0
ND1 P:HIS232 4.0 51.0 1.0
C P:HIS281 4.1 51.6 1.0
NE2 P:HIS281 4.2 51.6 1.0
CB P:MET284 4.2 55.3 1.0
CA P:CYS273 4.3 51.8 1.0
N P:CYS277 4.3 50.0 1.0
CD2 P:HIS281 4.4 51.6 1.0
C P:CYS273 4.4 51.8 1.0
CA P:CYS277 4.5 50.0 1.0
O P:CYS273 4.6 51.8 1.0
N P:THR274 4.8 50.8 1.0
CB P:HIS232 4.9 51.0 1.0
CG P:HIS232 4.9 51.0 1.0
CE1 P:HIS232 5.0 51.0 1.0
N P:HIS281 5.0 51.6 1.0
C P:GLU275 5.0 50.1 1.0

Copper binding site 2 out of 6 in 6hwh

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Copper binding site 2 out of 6 in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Cu402

b:82.9
occ:1.00
ND1 P:HIS232 2.2 51.0 1.0
CU P:CU401 2.2 71.2 1.0
SG P:CYS277 2.4 50.0 1.0
SD P:MET284 2.4 55.3 1.0
SG P:CYS273 2.5 51.8 1.0
CE P:MET284 2.5 55.3 1.0
CG P:HIS232 2.9 51.0 1.0
CB P:HIS232 3.1 51.0 1.0
CE1 P:HIS232 3.2 51.0 1.0
CB P:CYS273 3.5 51.8 1.0
CB P:CYS277 3.6 50.0 1.0
CA P:HIS232 3.8 51.0 1.0
CG P:MET284 4.1 55.3 1.0
CD2 P:HIS232 4.1 51.0 1.0
NE2 P:HIS232 4.2 51.0 1.0
N P:GLY233 4.3 50.9 1.0
ND1 P:HIS281 4.4 51.6 1.0
CB P:MET284 4.5 55.3 1.0
O P:GLU275 4.6 50.1 1.0
C P:HIS232 4.6 51.0 1.0
CA P:CYS273 4.9 51.8 1.0
CA P:CYS277 4.9 50.0 1.0
CE1 P:HIS281 5.0 51.6 1.0
N P:HIS232 5.0 51.0 1.0
O P:GLY233 5.0 50.9 1.0

Copper binding site 3 out of 6 in 6hwh

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Copper binding site 3 out of 6 in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
V:Cu803

b:47.2
occ:1.00
NE2 V:HIS314 2.1 37.2 1.0
ND1 V:HIS264 2.1 31.9 1.0
NE2 V:HIS313 2.2 40.2 1.0
CE1 V:HIS314 2.4 37.2 1.0
CE1 V:HIS313 2.8 40.2 1.0
CE1 V:HIS264 2.9 31.9 1.0
CG V:HIS264 3.1 31.9 1.0
CD2 V:HIS313 3.3 40.2 1.0
CD2 V:HIS314 3.3 37.2 1.0
CB V:HIS264 3.5 31.9 1.0
ND1 V:HIS314 3.6 37.2 1.0
ND V:HAS801 3.8 38.5 1.0
ND1 V:HIS313 4.0 40.2 1.0
NE2 V:HIS264 4.0 31.9 1.0
FE V:HAS801 4.0 38.5 1.0
C4D V:HAS801 4.1 38.5 1.0
CG V:HIS314 4.1 37.2 1.0
CD2 V:HIS264 4.1 31.9 1.0
CA V:HIS264 4.2 31.9 1.0
CG V:HIS313 4.2 40.2 1.0
C1D V:HAS801 4.3 38.5 1.0
NA V:HAS801 4.3 38.5 1.0
CHA V:HAS801 4.4 38.5 1.0
C1A V:HAS801 4.5 38.5 1.0
NB V:HAS801 4.6 38.5 1.0
C3D V:HAS801 4.7 38.5 1.0
CHB V:HAS801 4.8 38.5 1.0
C2D V:HAS801 4.8 38.5 1.0
CG1 V:VAL267 4.9 32.4 1.0
C1B V:HAS801 4.9 38.5 1.0
CE2 V:TYR268 4.9 36.0 1.0
NC V:HAS801 5.0 38.5 1.0

Copper binding site 4 out of 6 in 6hwh

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Copper binding site 4 out of 6 in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cu401

b:46.7
occ:1.00
CU L:CU402 1.9 91.9 1.0
SG L:CYS277 2.3 34.4 1.0
SG L:CYS273 2.4 35.1 1.0
SD L:MET284 2.4 36.9 1.0
ND1 L:HIS281 2.6 31.2 1.0
CB L:CYS273 2.8 35.1 1.0
CE1 L:HIS281 3.2 31.2 1.0
CB L:CYS277 3.5 34.4 1.0
CE L:MET284 3.6 36.9 1.0
CG L:MET284 3.7 36.9 1.0
CG L:HIS281 3.7 31.2 1.0
ND1 L:HIS232 3.8 31.3 1.0
O L:HIS281 3.8 31.2 1.0
O L:GLU275 4.0 33.2 1.0
CB L:MET284 4.1 36.9 1.0
CA L:HIS281 4.1 31.2 1.0
CA L:CYS273 4.1 35.1 1.0
CB L:HIS281 4.2 31.2 1.0
C L:CYS273 4.3 35.1 1.0
NE2 L:HIS281 4.4 31.2 1.0
C L:HIS281 4.4 31.2 1.0
O L:CYS273 4.5 35.1 1.0
N L:CYS277 4.6 34.4 1.0
CB L:HIS232 4.6 31.3 1.0
CG L:HIS232 4.6 31.3 1.0
CA L:CYS277 4.7 34.4 1.0
CD2 L:HIS281 4.7 31.2 1.0
CE1 L:HIS232 4.7 31.3 1.0
N L:THR274 4.7 32.5 1.0
CA L:HIS232 5.0 31.3 1.0

Copper binding site 5 out of 6 in 6hwh

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Copper binding site 5 out of 6 in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cu402

b:91.9
occ:1.00
CU L:CU401 1.9 46.7 1.0
ND1 L:HIS232 2.2 31.3 1.0
SG L:CYS277 2.4 34.4 1.0
SD L:MET284 2.4 36.9 1.0
SG L:CYS273 2.4 35.1 1.0
CE L:MET284 2.5 36.9 1.0
CG L:HIS232 2.9 31.3 1.0
CB L:HIS232 2.9 31.3 1.0
CB L:CYS273 3.3 35.1 1.0
CE1 L:HIS232 3.3 31.3 1.0
CB L:CYS277 3.7 34.4 1.0
CA L:HIS232 3.7 31.3 1.0
CD2 L:HIS232 4.0 31.3 1.0
CG L:MET284 4.1 36.9 1.0
N L:GLY233 4.2 32.4 1.0
NE2 L:HIS232 4.2 31.3 1.0
ND1 L:HIS281 4.4 31.2 1.0
CB L:MET284 4.4 36.9 1.0
O L:GLU275 4.5 33.2 1.0
C L:HIS232 4.5 31.3 1.0
CA L:CYS273 4.7 35.1 1.0
CE1 L:HIS281 4.8 31.2 1.0
N L:HIS232 4.9 31.3 1.0
O L:GLY233 4.9 32.4 1.0
CA L:CYS277 5.0 34.4 1.0

Copper binding site 6 out of 6 in 6hwh

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Copper binding site 6 out of 6 in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cu803

b:40.6
occ:1.00
NE2 Q:HIS314 2.1 24.5 1.0
ND1 Q:HIS264 2.1 24.0 1.0
NE2 Q:HIS313 2.1 27.1 1.0
CE1 Q:HIS313 2.7 27.1 1.0
CE1 Q:HIS314 2.7 24.5 1.0
CG Q:HIS264 2.8 24.0 1.0
CE1 Q:HIS264 2.9 24.0 1.0
CD2 Q:HIS314 3.2 24.5 1.0
CB Q:HIS264 3.2 24.0 1.0
CD2 Q:HIS313 3.3 27.1 1.0
CD2 Q:HIS264 3.7 24.0 1.0
NE2 Q:HIS264 3.8 24.0 1.0
ND1 Q:HIS313 3.8 27.1 1.0
ND1 Q:HIS314 3.8 24.5 1.0
CG Q:HIS314 4.1 24.5 1.0
CG Q:HIS313 4.1 27.1 1.0
CA Q:HIS264 4.2 24.0 1.0
ND Q:HAS801 4.2 29.6 1.0
C1D Q:HAS801 4.3 29.6 1.0
FE Q:HAS801 4.6 29.6 1.0
CHB Q:HAS801 4.6 29.6 1.0
C4D Q:HAS801 4.6 29.6 1.0
NB Q:HAS801 4.7 29.6 1.0
C1B Q:HAS801 4.8 29.6 1.0
O Q:VAL310 4.8 28.7 1.0
C2D Q:HAS801 4.8 29.6 1.0
CE2 Q:TYR268 4.9 23.4 1.0

Reference:

B.Wiseman, R.G.Nitharwal, O.Fedotovskaya, J.Schafer, H.Guo, Q.Kuang, S.Benlekbir, D.Sjostrand, P.Adelroth, J.L.Rubinstein, P.Brzezinski, M.Hogbom. Structure of A Functional Obligate Complex III2IV2RESPIRATORY Supercomplex From Mycobacterium Smegmatis. Nat. Struct. Mol. Biol. V. 25 1128 2018.
ISSN: ESSN 1545-9985
PubMed: 30518849
DOI: 10.1038/S41594-018-0160-3
Page generated: Sun Dec 13 11:22:56 2020

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