Atomistry » Copper » PDB 6fok-6ibj » 6hwh
Atomistry »
  Copper »
    PDB 6fok-6ibj »
      6hwh »

Copper in PDB 6hwh: Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis

Enzymatic activity of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis

All present enzymatic activity of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis:
1.10.2.2; 1.9.3.1;

Other elements in 6hwh:

The structure of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis also contains other interesting chemical elements:

Iron (Fe) 16 atoms

Copper Binding Sites:

The binding sites of Copper atom in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis (pdb code 6hwh). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 6 binding sites of Copper where determined in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis, PDB code: 6hwh:
Jump to Copper binding site number: 1; 2; 3; 4; 5; 6;

Copper binding site 1 out of 6 in 6hwh

Go back to Copper Binding Sites List in 6hwh
Copper binding site 1 out of 6 in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Cu401

b:71.2
occ:1.00
 CU P:CU402 2.2 82.9 1.0
ND1 P:HIS281 2.3 51.6 1.0
SG P:CYS277 2.4 50.0 1.0
SG P:CYS273 2.4 51.8 1.0
SD P:MET284 2.8 55.3 1.0
CE1 P:HIS281 3.0 51.6 1.0
CB P:CYS273 3.0 51.8 1.0
CG P:HIS281 3.4 51.6 1.0
CB P:CYS277 3.4 50.0 1.0
O P:HIS281 3.6 51.6 1.0
CA P:HIS281 3.7 51.6 1.0
CB P:HIS281 3.8 51.6 1.0
O P:GLU275 3.8 50.1 1.0
CE P:MET284 3.9 55.3 1.0
CG P:MET284 4.0 55.3 1.0
ND1 P:HIS232 4.0 51.0 1.0
C P:HIS281 4.1 51.6 1.0
NE2 P:HIS281 4.2 51.6 1.0
CB P:MET284 4.2 55.3 1.0
CA P:CYS273 4.3 51.8 1.0
N P:CYS277 4.3 50.0 1.0
CD2 P:HIS281 4.4 51.6 1.0
C P:CYS273 4.4 51.8 1.0
CA P:CYS277 4.5 50.0 1.0
O P:CYS273 4.6 51.8 1.0
N P:THR274 4.8 50.8 1.0
CB P:HIS232 4.9 51.0 1.0
CG P:HIS232 4.9 51.0 1.0
CE1 P:HIS232 5.0 51.0 1.0
N P:HIS281 5.0 51.6 1.0
C P:GLU275 5.0 50.1 1.0

Copper binding site 2 out of 6 in 6hwh

Go back to Copper Binding Sites List in 6hwh
Copper binding site 2 out of 6 in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Cu402

b:82.9
occ:1.00
 ND1 P:HIS232 2.2 51.0 1.0
CU P:CU401 2.2 71.2 1.0
SG P:CYS277 2.4 50.0 1.0
SD P:MET284 2.4 55.3 1.0
SG P:CYS273 2.5 51.8 1.0
CE P:MET284 2.5 55.3 1.0
CG P:HIS232 2.9 51.0 1.0
CB P:HIS232 3.1 51.0 1.0
CE1 P:HIS232 3.2 51.0 1.0
CB P:CYS273 3.5 51.8 1.0
CB P:CYS277 3.6 50.0 1.0
CA P:HIS232 3.8 51.0 1.0
CG P:MET284 4.1 55.3 1.0
CD2 P:HIS232 4.1 51.0 1.0
NE2 P:HIS232 4.2 51.0 1.0
N P:GLY233 4.3 50.9 1.0
ND1 P:HIS281 4.4 51.6 1.0
CB P:MET284 4.5 55.3 1.0
O P:GLU275 4.6 50.1 1.0
C P:HIS232 4.6 51.0 1.0
CA P:CYS273 4.9 51.8 1.0
CA P:CYS277 4.9 50.0 1.0
CE1 P:HIS281 5.0 51.6 1.0
N P:HIS232 5.0 51.0 1.0
O P:GLY233 5.0 50.9 1.0

Copper binding site 3 out of 6 in 6hwh

Go back to Copper Binding Sites List in 6hwh
Copper binding site 3 out of 6 in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
V:Cu803

b:47.2
occ:1.00
 NE2 V:HIS314 2.1 37.2 1.0
ND1 V:HIS264 2.1 31.9 1.0
NE2 V:HIS313 2.2 40.2 1.0
CE1 V:HIS314 2.4 37.2 1.0
CE1 V:HIS313 2.8 40.2 1.0
CE1 V:HIS264 2.9 31.9 1.0
CG V:HIS264 3.1 31.9 1.0
CD2 V:HIS313 3.3 40.2 1.0
CD2 V:HIS314 3.3 37.2 1.0
CB V:HIS264 3.5 31.9 1.0
ND1 V:HIS314 3.6 37.2 1.0
ND V:HAS801 3.8 38.5 1.0
ND1 V:HIS313 4.0 40.2 1.0
NE2 V:HIS264 4.0 31.9 1.0
FE V:HAS801 4.0 38.5 1.0
C4D V:HAS801 4.1 38.5 1.0
CG V:HIS314 4.1 37.2 1.0
CD2 V:HIS264 4.1 31.9 1.0
CA V:HIS264 4.2 31.9 1.0
CG V:HIS313 4.2 40.2 1.0
C1D V:HAS801 4.3 38.5 1.0
NA V:HAS801 4.3 38.5 1.0
CHA V:HAS801 4.4 38.5 1.0
C1A V:HAS801 4.5 38.5 1.0
NB V:HAS801 4.6 38.5 1.0
C3D V:HAS801 4.7 38.5 1.0
CHB V:HAS801 4.8 38.5 1.0
C2D V:HAS801 4.8 38.5 1.0
CG1 V:VAL267 4.9 32.4 1.0
C1B V:HAS801 4.9 38.5 1.0
CE2 V:TYR268 4.9 36.0 1.0
NC V:HAS801 5.0 38.5 1.0

Copper binding site 4 out of 6 in 6hwh

Go back to Copper Binding Sites List in 6hwh
Copper binding site 4 out of 6 in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 4 of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cu401

b:46.7
occ:1.00
 CU L:CU402 1.9 91.9 1.0
SG L:CYS277 2.3 34.4 1.0
SG L:CYS273 2.4 35.1 1.0
SD L:MET284 2.4 36.9 1.0
ND1 L:HIS281 2.6 31.2 1.0
CB L:CYS273 2.8 35.1 1.0
CE1 L:HIS281 3.2 31.2 1.0
CB L:CYS277 3.5 34.4 1.0
CE L:MET284 3.6 36.9 1.0
CG L:MET284 3.7 36.9 1.0
CG L:HIS281 3.7 31.2 1.0
ND1 L:HIS232 3.8 31.3 1.0
O L:HIS281 3.8 31.2 1.0
O L:GLU275 4.0 33.2 1.0
CB L:MET284 4.1 36.9 1.0
CA L:HIS281 4.1 31.2 1.0
CA L:CYS273 4.1 35.1 1.0
CB L:HIS281 4.2 31.2 1.0
C L:CYS273 4.3 35.1 1.0
NE2 L:HIS281 4.4 31.2 1.0
C L:HIS281 4.4 31.2 1.0
O L:CYS273 4.5 35.1 1.0
N L:CYS277 4.6 34.4 1.0
CB L:HIS232 4.6 31.3 1.0
CG L:HIS232 4.6 31.3 1.0
CA L:CYS277 4.7 34.4 1.0
CD2 L:HIS281 4.7 31.2 1.0
CE1 L:HIS232 4.7 31.3 1.0
N L:THR274 4.7 32.5 1.0
CA L:HIS232 5.0 31.3 1.0

Copper binding site 5 out of 6 in 6hwh

Go back to Copper Binding Sites List in 6hwh
Copper binding site 5 out of 6 in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 5 of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cu402

b:91.9
occ:1.00
 CU L:CU401 1.9 46.7 1.0
ND1 L:HIS232 2.2 31.3 1.0
SG L:CYS277 2.4 34.4 1.0
SD L:MET284 2.4 36.9 1.0
SG L:CYS273 2.4 35.1 1.0
CE L:MET284 2.5 36.9 1.0
CG L:HIS232 2.9 31.3 1.0
CB L:HIS232 2.9 31.3 1.0
CB L:CYS273 3.3 35.1 1.0
CE1 L:HIS232 3.3 31.3 1.0
CB L:CYS277 3.7 34.4 1.0
CA L:HIS232 3.7 31.3 1.0
CD2 L:HIS232 4.0 31.3 1.0
CG L:MET284 4.1 36.9 1.0
N L:GLY233 4.2 32.4 1.0
NE2 L:HIS232 4.2 31.3 1.0
ND1 L:HIS281 4.4 31.2 1.0
CB L:MET284 4.4 36.9 1.0
O L:GLU275 4.5 33.2 1.0
C L:HIS232 4.5 31.3 1.0
CA L:CYS273 4.7 35.1 1.0
CE1 L:HIS281 4.8 31.2 1.0
N L:HIS232 4.9 31.3 1.0
O L:GLY233 4.9 32.4 1.0
CA L:CYS277 5.0 34.4 1.0

Copper binding site 6 out of 6 in 6hwh

Go back to Copper Binding Sites List in 6hwh
Copper binding site 6 out of 6 in the Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 6 of Structure of A Functional Obligate Respiratory Supercomplex From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Cu803

b:40.6
occ:1.00
 NE2 Q:HIS314 2.1 24.5 1.0
ND1 Q:HIS264 2.1 24.0 1.0
NE2 Q:HIS313 2.1 27.1 1.0
CE1 Q:HIS313 2.7 27.1 1.0
CE1 Q:HIS314 2.7 24.5 1.0
CG Q:HIS264 2.8 24.0 1.0
CE1 Q:HIS264 2.9 24.0 1.0
CD2 Q:HIS314 3.2 24.5 1.0
CB Q:HIS264 3.2 24.0 1.0
CD2 Q:HIS313 3.3 27.1 1.0
CD2 Q:HIS264 3.7 24.0 1.0
NE2 Q:HIS264 3.8 24.0 1.0
ND1 Q:HIS313 3.8 27.1 1.0
ND1 Q:HIS314 3.8 24.5 1.0
CG Q:HIS314 4.1 24.5 1.0
CG Q:HIS313 4.1 27.1 1.0
CA Q:HIS264 4.2 24.0 1.0
ND Q:HAS801 4.2 29.6 1.0
C1D Q:HAS801 4.3 29.6 1.0
FE Q:HAS801 4.6 29.6 1.0
CHB Q:HAS801 4.6 29.6 1.0
C4D Q:HAS801 4.6 29.6 1.0
NB Q:HAS801 4.7 29.6 1.0
C1B Q:HAS801 4.8 29.6 1.0
O Q:VAL310 4.8 28.7 1.0
C2D Q:HAS801 4.8 29.6 1.0
CE2 Q:TYR268 4.9 23.4 1.0

Reference:

B.Wiseman, R.G.Nitharwal, O.Fedotovskaya, J.Schafer, H.Guo, Q.Kuang, S.Benlekbir, D.Sjostrand, P.Adelroth, J.L.Rubinstein, P.Brzezinski, M.Hogbom. Structure of A Functional Obligate Complex III2IV2RESPIRATORY Supercomplex From Mycobacterium Smegmatis. Nat. Struct. Mol. Biol. V. 25 1128 2018.
ISSN: ESSN 1545-9985
PubMed: 30518849
DOI: 10.1038/S41594-018-0160-3
Page generated: Wed Jul 31 06:11:01 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy